View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12228_low_7 (Length: 316)
Name: NF12228_low_7
Description: NF12228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12228_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 40 - 232
Target Start/End: Original strand, 28155861 - 28156053
Alignment:
| Q |
40 |
aatgttctgctcaatgaatcaaaatgtgaagaagcaactaccaattgtagatctcaagagttaagtaggtgaatcaaatcaacccctacccaaccacatg |
139 |
Q |
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| T |
28155861 |
aatgttctgctcaatgaatcaaaatgtgaagaagcaactaccaattgtagatctcaagagttaagtaggtgaatcaaatcaacccctacccaaccacatg |
28155960 |
T |
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| Q |
140 |
cattaaacaatttcgatatcttccacacaaattaacaatagcttattgttaacaaaaaccaaattagctacaacatacacctaattactagct |
232 |
Q |
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| T |
28155961 |
cattaaacaatttcgatatcttccacacaaattaacaatagcttattgttaacaaaaaccaaattagcttaaacatacacctaattactagct |
28156053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 225 - 278
Target Start/End: Original strand, 28156067 - 28156120
Alignment:
| Q |
225 |
tactagctctggtgttgttgggtccattttgttgttcatcctaaaatggagaaa |
278 |
Q |
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| T |
28156067 |
tactagctctggtgttgttgggtccattttgttgttcatcctaaaatggagaaa |
28156120 |
T |
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