View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12229_low_1 (Length: 585)

Name: NF12229_low_1
Description: NF12229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12229_low_1
NF12229_low_1
[»] chr5 (7 HSPs)
chr5 (1-567)||(13879775-13880339)
chr5 (330-556)||(13875563-13875805)
chr5 (338-396)||(13885860-13885918)
chr5 (104-152)||(43358252-43358300)
chr5 (104-154)||(9893692-9893742)
chr5 (343-396)||(13870759-13870812)
chr5 (479-515)||(13885720-13885756)
[»] chr8 (1 HSPs)
chr8 (104-155)||(39433399-39433450)
[»] chr3 (5 HSPs)
chr3 (104-146)||(40962720-40962762)
chr3 (123-157)||(29687069-29687103)
chr3 (104-154)||(36354540-36354590)
chr3 (104-157)||(38330773-38330826)
chr3 (116-153)||(43316634-43316671)
[»] chr4 (3 HSPs)
chr4 (104-147)||(44383445-44383488)
chr4 (104-152)||(35021488-35021536)
chr4 (109-141)||(40849657-40849689)
[»] scaffold0086 (1 HSPs)
scaffold0086 (104-146)||(19076-19118)
[»] chr1 (2 HSPs)
chr1 (116-153)||(7308454-7308491)
chr1 (123-155)||(26834509-26834541)
[»] chr6 (1 HSPs)
chr6 (104-152)||(9444767-9444815)
[»] chr2 (1 HSPs)
chr2 (104-144)||(39986429-39986469)


Alignment Details
Target: chr5 (Bit Score: 444; Significance: 0; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 1 - 567
Target Start/End: Complemental strand, 13880339 - 13879775
Alignment:
Q  1 ctgaataaataaactataattagttatagaaattaaaagtaagaatttcttaagnnnnnnnnttaaaagtaagaatagacnnnnnnnggtggtggccgga 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||        ||||||||||||||||||       ||||||||||||     
T  13880339 ctgaataaataaactataattagttatagaaattaaaagtaagaattttttaagaaaaaaaattaaaagtaagaatagactttttttggtggtggccggg 13880240  T
Q  101 gttcatattttatatattatttatatcaactgagctaagctcacgagcacaaataaaagtagactttattcaataatgcattgtctcatgatttttacat 200  Q
    ||||||||||||| |||| |  ||||||||||| ||||||||||||||| |||||| |||||||||||||||||||||| | ||||||||||||||||||    
T  13880239 gttcatattttatgtattgtccatatcaactgaactaagctcacgagcagaaataagagtagactttattcaataatgcgt-gtctcatgatttttacat 13880141  T
Q  201 aaataaatgttgaaatttattaactactaatccgatagactatgaggagtgattaactctaaaaaa-gaaaagaactaaatgaattaaaaatgatgaatg 299  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  13880140 aaataaatgttgaaatttattaactactaatccgatagactatgaggagtgattaactctaaaaaaagaaaagaactaaatgaattaaaaatgatgaatg 13880041  T
Q  300 aactaagttatatggtgagagtgattcaatgaaaaagtgacacgtcactaagcaaagtctcttgatagccaagttagtatccttctagaacattcttaag 399  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  13880040 aactaagttatatggtgagagtaattcaatgaaaaagtgacacgtcactaagcaaagtctcttgatagccaagttagtatccttctagaacattctaaag 13879941  T
Q  400 ccatttttcactacaaaaaccctaaaagcaagcgataaagagagaaagcaatcccaagaaaatctcactctgtcaactgtcaacacaatggcattttccc 499  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||| |||||||||||||||||||    
T  13879940 ccatttttcactacaaaaaccctaaaagcaagcgataaagagagaaagcaatcccaagaaaatctca--ctgtcaactgttaacacaatggcattttccc 13879843  T
Q  500 gcctcctttcttcctcttaccactctttcatgtccgccgtgcctgcattcattcgccaccgccccttc 567  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13879842 gcctcctttcttcctcttaccactctttcatgtccgccgtgcctgcattcattcgccaccgccccttc 13879775  T

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Target: chr5; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 330 - 556
Target Start/End: Complemental strand, 13875805 - 13875563
Alignment:
Q  330 gaaaaagtgacacgtcactaagcaaagtctcttgatagccaagttagtatccttctagaacattcttaagccattt----------ttcactacaaaaac 419  Q
    ||||| |||||||||||| || ||||||  |||| || ||||||||||||||||||||||||||||||||||||||           |||||||||||||    
T  13875805 gaaaacgtgacacgtcacaaaacaaagtggcttggtaaccaagttagtatccttctagaacattcttaagccatttcactaactcactcactacaaaaac 13875706  T
Q  420 cctaaaagcaagcgataaagagagaaagcaatcccaagaaaatctc--actctgtcaact--------gtcaacacaatggcattttcccgcctcctttc 509  Q
    |||||||  |||    ||||| ||||||||||||||| ||||||||  | ||||| || |         |||||||||||||||||||||||||||| ||    
T  13875705 cctaaaattaag----aaagaaagaaagcaatcccaaaaaaatctctaaatctgtgaagtcaagtttcttcaacacaatggcattttcccgcctcctctc 13875610  T
Q  510 ttcctcttaccactctttcatgtccgccgtgcctgcattcattcgcc 556  Q
    |||||  |||| ||| |||||| ||||||||||| || |||||||||    
T  13875609 ttcctgctaccgctcattcatggccgccgtgccttcactcattcgcc 13875563  T

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Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 338 - 396
Target Start/End: Complemental strand, 13885918 - 13885860
Alignment:
Q  338 gacacgtcactaagcaaagtctcttgatagccaagttagtatccttctagaacattctt 396  Q
    ||||||||||||||||||||  |||| |||||||| ||||||||||||||||| |||||    
T  13885918 gacacgtcactaagcaaagtggcttggtagccaaggtagtatccttctagaaccttctt 13885860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 104 - 152
Target Start/End: Complemental strand, 43358300 - 43358252
Alignment:
Q  104 catattttatatattatttatatcaactgagctaagctcacgagcacaa 152  Q
    ||||||||||| ||||| |||| ||||||||||||||||||||| ||||    
T  43358300 catattttatacattatctataccaactgagctaagctcacgaggacaa 43358252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 104 - 154
Target Start/End: Original strand, 9893692 - 9893742
Alignment:
Q  104 catattttatatattatttatatcaactgagctaagctcacgagcacaaat 154  Q
    ||||||||||  ||||| ||||||||||||||||||||| |||| ||||||    
T  9893692 catattttatgcattatctatatcaactgagctaagctcgcgaggacaaat 9893742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 343 - 396
Target Start/End: Complemental strand, 13870812 - 13870759
Alignment:
Q  343 gtcactaagcaaagtctcttgatagccaagttagtatccttctagaacattctt 396  Q
    |||| ||||||||||  |||| |||||||||||||||| ||||||||| |||||    
T  13870812 gtcagtaagcaaagtggcttggtagccaagttagtatcattctagaaccttctt 13870759  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 479 - 515
Target Start/End: Complemental strand, 13885756 - 13885720
Alignment:
Q  479 tcaacacaatggcattttcccgcctcctttcttcctc 515  Q
    ||||||||||||||||||||||| |||| ||||||||    
T  13885756 tcaacacaatggcattttcccgcttcctctcttcctc 13885720  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 104 - 155
Target Start/End: Complemental strand, 39433450 - 39433399
Alignment:
Q  104 catattttatatattatttatatcaactgagctaagctcacgagcacaaata 155  Q
    |||||||||| |||| || ||||||||||||||||||||||||| |||||||    
T  39433450 catattttatgtattgttcatatcaactgagctaagctcacgaggacaaata 39433399  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 104 - 146
Target Start/End: Complemental strand, 40962762 - 40962720
Alignment:
Q  104 catattttatatattatttatatcaactgagctaagctcacga 146  Q
    ||||||||||||||| |||||| ||||||||||||||||||||    
T  40962762 catattttatatattgtttatagcaactgagctaagctcacga 40962720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 123 - 157
Target Start/End: Complemental strand, 29687103 - 29687069
Alignment:
Q  123 atatcaactgagctaagctcacgagcacaaataaa 157  Q
    ||||||||||||||||||||||||| |||||||||    
T  29687103 atatcaactgagctaagctcacgaggacaaataaa 29687069  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 104 - 154
Target Start/End: Original strand, 36354540 - 36354590
Alignment:
Q  104 catattttatatattatttatatcaactgagctaagctcacgagcacaaat 154  Q
    ||||| ||||||||| || |||||||||||||||||||||| || ||||||    
T  36354540 catatattatatatttttcatatcaactgagctaagctcacaagaacaaat 36354590  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 104 - 157
Target Start/End: Original strand, 38330773 - 38330826
Alignment:
Q  104 catattttatatattatttatatcaactgagctaagctcacgagcacaaataaa 157  Q
    ||||| ||||||||| |||||| ||| ||||||||||||||||  |||||||||    
T  38330773 catatattatatattgtttataccaattgagctaagctcacgaagacaaataaa 38330826  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 116 - 153
Target Start/End: Original strand, 43316634 - 43316671
Alignment:
Q  116 attatttatatcaactgagctaagctcacgagcacaaa 153  Q
    ||||| |||||||||||||||||||||||||| |||||    
T  43316634 attatctatatcaactgagctaagctcacgaggacaaa 43316671  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 104 - 147
Target Start/End: Complemental strand, 44383488 - 44383445
Alignment:
Q  104 catattttatatattatttatatcaactgagctaagctcacgag 147  Q
    ||||||||||||||| |||||| ||||||||||||| |||||||    
T  44383488 catattttatatattgtttataccaactgagctaagttcacgag 44383445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 104 - 152
Target Start/End: Original strand, 35021488 - 35021536
Alignment:
Q  104 catattttatatattatttatatcaactgagctaagctcacgagcacaa 152  Q
    |||||||||| |||| |  ||||||||||||||||||||||||| ||||    
T  35021488 catattttatgtattgtccatatcaactgagctaagctcacgaggacaa 35021536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 109 - 141
Target Start/End: Complemental strand, 40849689 - 40849657
Alignment:
Q  109 tttatatattatttatatcaactgagctaagct 141  Q
    |||||| ||||||||||||||||||||||||||    
T  40849689 tttatacattatttatatcaactgagctaagct 40849657  T

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Target: scaffold0086 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 104 - 146
Target Start/End: Original strand, 19076 - 19118
Alignment:
Q  104 catattttatatattatttatatcaactgagctaagctcacga 146  Q
    ||||||||||||||| |||||| |||||||| |||||||||||    
T  19076 catattttatatattgtttataccaactgagttaagctcacga 19118  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 116 - 153
Target Start/End: Original strand, 7308454 - 7308491
Alignment:
Q  116 attatttatatcaactgagctaagctcacgagcacaaa 153  Q
    ||||| |||||||||||||||||||||||||| |||||    
T  7308454 attatctatatcaactgagctaagctcacgagtacaaa 7308491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 123 - 155
Target Start/End: Complemental strand, 26834541 - 26834509
Alignment:
Q  123 atatcaactgagctaagctcacgagcacaaata 155  Q
    ||||||||||||||||||||||||| |||||||    
T  26834541 atatcaactgagctaagctcacgaggacaaata 26834509  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 104 - 152
Target Start/End: Complemental strand, 9444815 - 9444767
Alignment:
Q  104 catattttatatattatttatatcaactgagctaagctcacgagcacaa 152  Q
    ||||| |||||| ||||  ||| ||||||||||||||||||||||||||    
T  9444815 catatattatattttatccataccaactgagctaagctcacgagcacaa 9444767  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 104 - 144
Target Start/End: Original strand, 39986429 - 39986469
Alignment:
Q  104 catattttatatattatttatatcaactgagctaagctcac 144  Q
    |||||||||| |||||||||||| || ||||||||||||||    
T  39986429 catattttatgtattatttatattaagtgagctaagctcac 39986469  T

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