View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12229_low_2 (Length: 297)
Name: NF12229_low_2
Description: NF12229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12229_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 277
Target Start/End: Original strand, 33888615 - 33888891
Alignment:
| Q |
1 |
caggagcaagagatcgatgatgacttgctctagggttcgctattttatcttctttttttaaatnnnnnnnngagggattttgtttatcaaatatcnnnnn |
100 |
Q |
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| T |
33888615 |
caggagcaagagatcgatgatgacttgctctagggttcgctattttatcttctttttttaaataaaaaaaagagggattttgtttatcaaatatcttttt |
33888714 |
T |
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| Q |
101 |
nnnnnnnaagtaactacttcgttagaaaaacattagatgattgatacaagttagtggcaaaatattatgacaatggaaaatttagattaataaagcactt |
200 |
Q |
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| T |
33888715 |
tatttttaagtaactacttcgttagaaaaacattagatgattgatacaagttagtggcaaaatattatgacaatggaaaatttagattaataaagcactt |
33888814 |
T |
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| Q |
201 |
ctacactcaatcgtaacttggtgcaatcaataggcttaaaagagataatannnnnnngtaggtcataaccaactaac |
277 |
Q |
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| T |
33888815 |
ctacactcaatcataacttggtgcaatcaataggcttaaaagagataatatttttttgtaggtcataaccaactaac |
33888891 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 191 - 249
Target Start/End: Complemental strand, 28403712 - 28403654
Alignment:
| Q |
191 |
taaagcacttctacactcaatcgtaacttggtgcaatcaataggcttaaaagagataat |
249 |
Q |
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|||||||| | |||||| |||| |||||||||||||| ||||||||||||||||||| |
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| T |
28403712 |
taaagcacgtttacactgaatcaatacttggtgcaatcagtaggcttaaaagagataat |
28403654 |
T |
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