View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12230_high_3 (Length: 582)
Name: NF12230_high_3
Description: NF12230
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12230_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 542; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 542; E-Value: 0
Query Start/End: Original strand, 1 - 575
Target Start/End: Original strand, 49944209 - 49944783
Alignment:
| Q |
1 |
cagctaccctggctgcatagtctcgttctgctgccgagtgaaccgcggcttcctctcgtgcaagtctccttgttctagttcgatggtcaatcccttcttc |
100 |
Q |
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| T |
49944209 |
cagctaccctggctgcatagtctcgttctgctgccgattgaaccgcggcttcctctcgtgcaagtctccttgttctagttcgatggtcaatcccttcttc |
49944308 |
T |
|
| Q |
101 |
agtagacaagtgcctctttgtaccaccttcattgtttggtatccctaaccaactataatccttcttctgcacaatcaatacacttggatgtgacaaaact |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49944309 |
agtagacaagtgcctctttgtaccaccttcattgtttggtatccctaaccaactataatccttcttctgcacaatcaatacacttggatgtgacaaaact |
49944408 |
T |
|
| Q |
201 |
gcatcaaccacaacttttcctctcatcaaactagcaaaaggatgaatatgaatcttaacaataggaacctcaccacaagaaaattcctccttatgtggcc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49944409 |
gcatcaaccacaacttttcctctcatcaaactagcaaaaggatgaatatgaatcttaacaataggaacctcaccacaagaaaattcctccttatgtggcc |
49944508 |
T |
|
| Q |
301 |
caaatgaacatgactccaatgtcaaactcaatggagagattcttctaacctttccaaactgaaaatcacgctgaatctgctcgctgattaccaaacaaac |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49944509 |
caaatgaacatgactccaatgtcaaactcaatggagagattcttctaacctttccaaactgaaaatcacgctgaatctgctcgctgattaccaaacaaac |
49944608 |
T |
|
| Q |
401 |
agaaggcaatagtttggcttcgacataatccttaactttattacttccaaaccaaaccaacagacacaaaccagagataacaacagtgtaaacacatacc |
500 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49944609 |
agaaggcaatagtttggcttcgacataatccttaactatattacttccaaaccaaaccaacagacacaaaccagagataacaacagtgtaaacacatacc |
49944708 |
T |
|
| Q |
501 |
ctcatcnnnnnnntcccttctttccacaatggagtgaagaaaggagaaaagcgtgattctttattagtacatttc |
575 |
Q |
| |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
49944709 |
ctcatcaaaaaaatcccttctttccacaatggagtgaagaaaggagaaaagcgtgattcttcattagtacatttc |
49944783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 138 - 360
Target Start/End: Complemental strand, 1903575 - 1903353
Alignment:
| Q |
138 |
ggtatccctaaccaactataatccttcttctgcacaatcaatacacttggatgtgacaaaactgcatcaaccacaacttttcctctcatcaaactagcaa |
237 |
Q |
| |
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|||||||| |||||| || |||||||||||||||||| ||| ||||| || || | |||||| |||||||| || || || || ||| ||||||| |||| |
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| T |
1903575 |
ggtatccccaaccaagtaaaatccttcttctgcacaaccaacacactcggctgcgtcaaaaccgcatcaacaaccaccttccccctcctcaaacttgcaa |
1903476 |
T |
|
| Q |
238 |
aaggatgaatatgaatcttaacaataggaacctcaccacaagaaaattcctccttatgtggcccaaatgaacatgactccaatgtcaaactcaatggaga |
337 |
Q |
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| T |
1903475 |
aaggtcgtaccctaatcttcaccgtcggaacctccccacacgaaaactcctccttatgcggcccaatcgaacacgcctccaacgtaatactcaacggtga |
1903376 |
T |
|
| Q |
338 |
gattcttctaacctttccaaact |
360 |
Q |
| |
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|| || ||||| || ||||||| |
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| T |
1903375 |
aatcctcctaactttaccaaact |
1903353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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