View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12230_high_4 (Length: 446)
Name: NF12230_high_4
Description: NF12230
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12230_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 408; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 1 - 444
Target Start/End: Original strand, 13747856 - 13748299
Alignment:
| Q |
1 |
ctcttcaatagctgatggagatgcaggttgatcaatttttagtagttgctgaatgtcatgttcttcttgcggtggaactgaaattgagtcagccaagtcc |
100 |
Q |
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| T |
13747856 |
ctcttcaatagctgatggagatgcaggttgatcaatttttagtagttgctgaatgtcatgttcttcttgcggtggaactgaaattgagttagccaagtcc |
13747955 |
T |
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| Q |
101 |
tcatttccttccatggttatctggaaaagactaagtttctgatgtaaaattcttatttcttgatctttcaagaaattagatgtcttcagttcatttaact |
200 |
Q |
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| T |
13747956 |
tcatttccttccatggttatctgcaaaagactaagtttctgatgtaaaattcttatctcttgatctttcaagtaattagacgtcttcagttcatttaact |
13748055 |
T |
|
| Q |
201 |
gcaattgcaaacaagaatccaaggttttgtcttgatttttgtcctctatttcggcgagcctcttcttaacatctttgtaattccgaagagtattagtgta |
300 |
Q |
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| T |
13748056 |
gcaattgcaaacaagaatccaaggttttgtcttgatttttgtcctctatttcggcgagcctcttcttaacatctttgtaattccgaagagtattagtgta |
13748155 |
T |
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| Q |
301 |
ctcggttagaagtgctttttctctatcctgcattccatccagaaacattttccgccaatccggttcatcatctggtgttgtttcctgctctttgtgatca |
400 |
Q |
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| T |
13748156 |
ctcggttagaagtgctttttctctatcctgcattccatccagaaacattttccgccaatccggttcatcatctggtgttgtttcctgctctttgtgatca |
13748255 |
T |
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| Q |
401 |
acgccaagattattccccgtcttagatggatattcttcgacatc |
444 |
Q |
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| T |
13748256 |
actccaagattattccccgtcttagatggatcttgtttgacatc |
13748299 |
T |
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