View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12230_high_7 (Length: 353)
Name: NF12230_high_7
Description: NF12230
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12230_high_7 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 16 - 353
Target Start/End: Complemental strand, 13747922 - 13747585
Alignment:
| Q |
16 |
agaagaacatgacattcagcaactactaaaaattgatcaacctgcatctccatcagctattgaagagaagttccggtccaatatggatgaaattctagag |
115 |
Q |
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| T |
13747922 |
agaagaacatgacattcagcaactactaaaaattgatcaacctgcatctccatcagctattgaagagaagttccggtccaatatggatgaaattctagag |
13747823 |
T |
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| Q |
116 |
gagaacttgactttctggttaaaatttagtacaacttatgctgagatacagagatttgaaaccactatcaaggatttgcaaaccgaggtatcaaaactcg |
215 |
Q |
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| T |
13747822 |
gagaacttgactttctggttaaaatttagtacaacttatgctgagatacagagatttgaaaccactatcaaggatttgcaaaccgaggtatcaaaactcg |
13747723 |
T |
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| Q |
216 |
aggaaaacagaaagtcttctgaaggtagtgcaggcataaagcattctctaaaatcagatgcaaggccgatatacaaacacctgacagagattcaatctga |
315 |
Q |
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| T |
13747722 |
aggaaaacggaaagtcttctgaaggtagtgcaggcataaagcattctctaaaatcagatgcaaggccgatatacaaacacctgacagagattcaatctga |
13747623 |
T |
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| Q |
316 |
aataacagtctgggtggagaaaagtgccttgatgaaag |
353 |
Q |
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| T |
13747622 |
aataacagtctgggtggagaaaagtgccctgatgaaag |
13747585 |
T |
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