View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12230_low_1 (Length: 606)
Name: NF12230_low_1
Description: NF12230
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12230_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 578; Significance: 0; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 578; E-Value: 0
Query Start/End: Original strand, 1 - 590
Target Start/End: Complemental strand, 3017893 - 3017304
Alignment:
| Q |
1 |
cacagcatgccgcaaataggtattataagctttgttgcacacttttgaagaacactttttcccaactttcgagcaattggcgaaaccacctgaatcataa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3017893 |
cacagcatgccgcaaataggtattataagctttgttgcacacttttgaagaacactttttcccaactttcgagcaattggcgaaaccacctgaatcataa |
3017794 |
T |
|
| Q |
101 |
tgatagtgatcacgacaattataagcaatccataatgaaatgaaataagtttcagtttcataatcacaatctattaaaaagaatgagattaaatttccaa |
200 |
Q |
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| T |
3017793 |
tgatagtgatcacgacaattataagcaatccataatgaaatgaaataagtttcagtttcataatcacaatctattaaaaagaatgagattaaatttccaa |
3017694 |
T |
|
| Q |
201 |
acaccaaccttattgtctttctttacacaatctaagattggatagagtaagccgagagatatatcgtcactttcctcgataacacgggccattatggctt |
300 |
Q |
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| T |
3017693 |
acaccaaccttattgtctttctttacacaatctaagattggatagagtaagccgagagatatatcgtcactttcctcaataacacgggccattatggctt |
3017594 |
T |
|
| Q |
301 |
ccatggacgagaaaacaatttctggatgatattctctgaaagtttcaaacatagttgataagaagcatgttcacacattttgcattcactacagacaaca |
400 |
Q |
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| T |
3017593 |
ccatggacgagaaaacaatttctggatgatattctctgaaagtttcaaacatagctgataagaagcatgttcacacattttgcattcactacagacaaca |
3017494 |
T |
|
| Q |
401 |
acaacaattacaattactgcagcttctagtgatagattcatattaaattcaacccataaacaatgaacaatgatgatatagttcattaaaattcataacc |
500 |
Q |
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| T |
3017493 |
acaacaattacaattactgcagcttctagtgatagattcatattaaattcaacccataaacaatgaacaatgatgatatagttcattaaaattcataacc |
3017394 |
T |
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| Q |
501 |
atatggaacaccaaccccaccaatcggtcgaaagcagattcttcggtataagaatcttaagatgatatcatgtatgactataaaaaattg |
590 |
Q |
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| T |
3017393 |
atatggaacaccaaccctaccaatcggtcgaaagcagattcttcggtataagaatcttaagatgatatcatgtatgactataaaaaattg |
3017304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 175; E-Value: 6e-94
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 3020994 - 3020776
Alignment:
| Q |
1 |
cacagcatgccgcaaataggtattataagctttgttgcacacttttgaagaacactttttcccaactttcgagcaattggcgaaaccacctgaatcataa |
100 |
Q |
| |
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|||| ||| ||||||| ||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| |||| ||||| ||||||||||||| |
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| T |
3020994 |
cacaacataccgcaaacaggtattataagccttgttgcacacttttgaagaacactttcccccaactttcgagcatttggtgaaacaacctgaatcataa |
3020895 |
T |
|
| Q |
101 |
tgatagtgatcacgacaattataagcaatccataatgaaatgaaataagtttcagtttcataatcacaatctattaaaaagaatgagattaaatttccaa |
200 |
Q |
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| T |
3020894 |
tgatagtgatcacgacaattataagcaatccataatgaaatgaaataagtttcagtttcataatcacaatctattaaaaagaatgagattaaatttccaa |
3020795 |
T |
|
| Q |
201 |
acaccaaccttattgtctt |
219 |
Q |
| |
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|| ||| |||||||||||| |
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| T |
3020794 |
actccacccttattgtctt |
3020776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 248 - 385
Target Start/End: Complemental strand, 3020776 - 3020639
Alignment:
| Q |
248 |
taagccgagagatatatcgtcactttcctcgataacacgggccattatggcttccatggacgagaaaacaatttctggatgatattctctgaaagtttca |
347 |
Q |
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|||||| ||||||||||||||||||||||| | ||||||| |||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
3020776 |
taagccaagagatatatcgtcactttcctcaaaaacacggatcattatggtttccatggacgagaaaacaatttctggatgatgttctctgaaagtttca |
3020677 |
T |
|
| Q |
348 |
aacatagttgataagaagcatgttcacacattttgcat |
385 |
Q |
| |
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|||| || |||||||||||||||||||| ||||||||| |
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| T |
3020676 |
aacagagctgataagaagcatgttcacatattttgcat |
3020639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 26 - 385
Target Start/End: Complemental strand, 3033830 - 3033474
Alignment:
| Q |
26 |
taagctttgttgcacacttttgaagaacactttttcccaactttcgagcaattggcgaaaccacctgaatcataatgatagtgatcacgacaattataag |
125 |
Q |
| |
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||||| |||||||||| ||| ||| || |||| ||||||||||||||||||||| ||||| |||||||||| |||| || || |||||||||||| |
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| T |
3033830 |
taagccttgttgcacaactttcaaggactctttcccccaactttcgagcaattggcaaaacctcctgaatcatgatgacagcagccatgacaattataag |
3033731 |
T |
|
| Q |
126 |
caatccataatgaaatgaaataagtttcagtttcataatcacaatctattaaaaagaatgagattaaat--ttccaaacaccaaccttattgtctttctt |
223 |
Q |
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||| ||||||||||| | |||||||||| | |||||| | ||||||| |||||||| | ||| || ||||||||||||| |||||||||||| |
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| T |
3033730 |
aaattcataatgaaat-----atgtttcagtttaacaatcacgacctattaacaagaatgaaacgaaaaaattacaaacaccaacctcattgtctttctt |
3033636 |
T |
|
| Q |
224 |
tacacaatctaagattggatagagtaagccgagagatatatcgtcactttcctcgataacacgggccattatggcttccatggacgagaaaacaatttct |
323 |
Q |
| |
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||||| |||||||||||| |||||||| | |||||| || |||||||| || | | || |||||| | ||||||||||||||||||| | ||| |
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| T |
3033635 |
tacactgtctaagattggagagagtaagtcatcagatatttcttcactttcttctagacagaggatcattatagtttccatggacgagaaaacattatct |
3033536 |
T |
|
| Q |
324 |
ggatgatattctctgaaagtttcaaacatagttgataagaagcatgttcacacattttgcat |
385 |
Q |
| |
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||||||| ||| |||||||||||||||| || || | |||| |||||||||||||||||||| |
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| T |
3033535 |
ggatgatgttccctgaaagtttcaaacagagatgcttagaaccatgttcacacattttgcat |
3033474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 500 - 590
Target Start/End: Complemental strand, 3020545 - 3020455
Alignment:
| Q |
500 |
catatggaacaccaaccccaccaatcggtcgaaagcagattcttcggtataagaatcttaagatgatatcatgtatgactataaaaaattg |
590 |
Q |
| |
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|||||||||||| | ||| |||| | |||| |||||||||||||| ||| ||| |||||| |||||||||||| ||||||||||||||||| |
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| T |
3020545 |
catatggaacactagccctaccatttggtcaaaagcagattcttcagtacaagcatcttatgatgatatcatgcatgactataaaaaattg |
3020455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 404 - 458
Target Start/End: Complemental strand, 3020596 - 3020542
Alignment:
| Q |
404 |
acaattacaattactgcagcttctagtgatagattcatattaaattcaacccata |
458 |
Q |
| |
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||||||||||||||||||||||||||||| |||||||||||||||||||| |||| |
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| T |
3020596 |
acaattacaattactgcagcttctagtgaaagattcatattaaattcaactcata |
3020542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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