View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12230_low_2 (Length: 339)
Name: NF12230_low_2
Description: NF12230
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12230_low_2 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 1 - 339
Target Start/End: Complemental strand, 41575140 - 41574802
Alignment:
| Q |
1 |
tgattctgatagaacaagcttctcagcttgaaaacggccatcttgatgacttctattatgcccatttggcattctataatctttctagatgtgcctattc |
100 |
Q |
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| T |
41575140 |
tgattctgatagaacaagcttctcagcttgaaaacggccatcttgatgacttctattatgcccatttggcattctataatctttctagatgtgcctattc |
41575041 |
T |
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| Q |
101 |
attcttttccttctannnnnnnnnnnnaaatgttttgttgcagcaacttttactaaagtaaatcaaactccatacagtgacttttgattggactatgtgt |
200 |
Q |
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| T |
41575040 |
attcttttccttctattttttatttttaaatgttttgttgcagcaacttttactaaagtaaatcaaactccatacagtgacttttgattggactatgtgt |
41574941 |
T |
|
| Q |
201 |
tgacttttatccgcttagtaacaatttcttggctaataagtctggtttggatagaaatcttaaaataaaattcaagttttgtgttgagtgaaagtctgtc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41574940 |
tgacttttatccgcttagtaacaatttcttggctaataagtctggtttggatagaaatcttaaaataaaattcaagttttgtgttgagtgaaagtctgtc |
41574841 |
T |
|
| Q |
301 |
aaactagtattatttattgtgttcctggtttacaataac |
339 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
41574840 |
aaactagtattatttattgtgttcctggtttacaataac |
41574802 |
T |
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