View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12231_high_1 (Length: 232)
Name: NF12231_high_1
Description: NF12231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12231_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 128; Significance: 3e-66; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 198
Target Start/End: Complemental strand, 5230459 - 5230267
Alignment:
| Q |
1 |
catttaaaacaacatcctcaatttttctgtcatctgttgaaaaattacattatcaagagtcaaattggtaaagcnnnnnnnnnnnnnnnnnnnggaaagt |
100 |
Q |
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| T |
5230459 |
catttaaaaccacatcctcaatttttctgtcatctgttgaaaaattacattatcaagagtcaaattggtaaagcaaaaagaaaaaaaa-----ggaaagt |
5230365 |
T |
|
| Q |
101 |
agaatgagaatatgatgagatagttttggtgcatttgcgaagctaattacgcactcccctcttttttaatctacgtattaaggttatttacacatatt |
198 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
5230364 |
agaatgagaatatgatgagatagttttggtgcatttgcgaagctaattacgcactcccctcttttttaatctacgttttaaggttatttacacatatt |
5230267 |
T |
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