View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12231_low_2 (Length: 484)
Name: NF12231_low_2
Description: NF12231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12231_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 395; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 9 - 471
Target Start/End: Original strand, 12726315 - 12726774
Alignment:
| Q |
9 |
cagaacctgtgcagtttatgccatttcggcttagttttactgaactgttgtaacttttcggtttggttttcactcctgaaacaaacaatgaacttcacat |
108 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12726315 |
cagaaccagtgcagtttatgccatttcggcttagttttactgaactgttgtaacttttcggtttggttttcactcctgaaacaaacaatgaacttcacat |
12726414 |
T |
|
| Q |
109 |
aagttgaaataagctttaatttatcacctgtggtaattattgctgatctgattgcggcaggagtccaatctgggtgaaatgacttcacatatgctgctac |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12726415 |
aagttgaaataagctttaatttatcacctgtggtaattattgctgatctgattgcggcaggagtccaatctgggtgaaatgacttcacatatgctgctac |
12726514 |
T |
|
| Q |
209 |
tccagaaacatgagggcatgacattgatgtaccggacattagtgtaaattctgaaaattgagtgtcaccttctaaaccactaattgatgtcttaagtgta |
308 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
12726515 |
tccagaaacatgagggcatgacattgatgtaccggacatcagtgtaaattctgaaaattgagtgtcgccttctaaaccactaattgatgtcttaagtgta |
12726614 |
T |
|
| Q |
309 |
tatgcagccaagatgttaatgccaggagctgttatgtcaggctgcatacaagatattattgaacaaaatactagctttatggtcaataatcaagaacagg |
408 |
Q |
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| T |
12726615 |
tatgcagccaagatgttaatgccaggagctgttatgtcaggctgcatacaagatattattgaacaaaatacta-ctttatggtcaatattcaagaacaag |
12726713 |
T |
|
| Q |
409 |
aagctnnnnnnnnngtgcagtaattacaaaatgaacgaaagatagcaactttaataccttgag |
471 |
Q |
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| T |
12726714 |
aagct--aaaaaaagtgcagtaattacaaaatgaatgaaagttagcaactttaataccttgag |
12726774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 122 - 373
Target Start/End: Complemental strand, 34293825 - 34293574
Alignment:
| Q |
122 |
ctttaatttatcacctgtggtaattattgctgatctgattgcggcaggagtccaatctgggtgaaatgacttcacatatgctgctactccagaaacatga |
221 |
Q |
| |
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||||||||| |||||||| || ||||| |||||||||||||| ||||| ||||||| ||||||||||||||||||||||||||||| |||||||| ||| |
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| T |
34293825 |
ctttaatttttcacctgtagtcattatagctgatctgattgcagcaggggtccaatttgggtgaaatgacttcacatatgctgctattccagaaatgtga |
34293726 |
T |
|
| Q |
222 |
gggcatgacattgatgtaccggacattagtgtaaattctgaaaattgagtgtcaccttctaaaccactaattgatgtcttaagtgtatatgcagccaaga |
321 |
Q |
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| T |
34293725 |
gggcatgccatggaagtgccagacattagtgtaaatactgaaaattgagtgtccccttctatactagtaattgagtgcctaagtgtaaatgatgccaaga |
34293626 |
T |
|
| Q |
322 |
tgttaatgccaggagctgttatgtcaggctgcatacaagatattattgaaca |
373 |
Q |
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|| |||||||||||||||||| ||||||||||| ||||| |||||| |||| |
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| T |
34293625 |
tgctaatgccaggagctgttacatcaggctgcatccaagagattattcaaca |
34293574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 132 - 355
Target Start/End: Complemental strand, 28521577 - 28521354
Alignment:
| Q |
132 |
tcacctgtggtaattattgctgatctgattgcggcaggagtccaatctgggtgaaatgacttcacatatgctgctactccagaaacatgagggcatgaca |
231 |
Q |
| |
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||||| ||||| || ||||| ||||||||||| ||||||||||| | || |||||||||||||||||||||||||| |||| |||||||| |||| || |
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| T |
28521577 |
tcaccagtggtgataattgcagatctgattgcagcaggagtccatttgggatgaaatgacttcacatatgctgctacaccagcgacatgaggacatgcca |
28521478 |
T |
|
| Q |
232 |
ttgatgtaccggacattagtgtaaattctgaaaattgagtgtcaccttctaaaccactaattgatgtcttaagtgtatatgcagccaagatgttaatgcc |
331 |
Q |
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| || || ||||| |||| || ||||||||||||||| || || ||| | |||||| | | |||| || |||| ||||| | |||||||||| |||||| |
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| T |
28521477 |
tggaagttccggatattattgaaaattctgaaaattgtgtatcccctgccaaaccagtgagtgatttcctaagagtataagatgccaagatgtcaatgcc |
28521378 |
T |
|
| Q |
332 |
aggagctgttatgtcaggctgcat |
355 |
Q |
| |
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||||||| |||||||||||||| |
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| T |
28521377 |
tggagctgcaatgtcaggctgcat |
28521354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 173 - 228
Target Start/End: Complemental strand, 18214765 - 18214710
Alignment:
| Q |
173 |
ccaatctgggtgaaatgacttcacatatgctgctactccagaaacatgagggcatg |
228 |
Q |
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|||||| || |||||||||||||||||||| | ||||||| |||||||||||||| |
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| T |
18214765 |
ccaatcaggatgaaatgacttcacatatgcaacaactccagcaacatgagggcatg |
18214710 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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