View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12232_high_1_N (Length: 351)
Name: NF12232_high_1_N
Description: NF12232
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12232_high_1_N |
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Alignment Details
Target: chr4 (Bit Score: 137; Significance: 2e-71; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 16 - 212
Target Start/End: Original strand, 50226592 - 50226788
Alignment:
| Q |
16 |
atccaaaaaatagtctagcaccaaatcaagtataacaccatcacaatctatgttgctatgcattattttattcgtcaaatttcatcttcatttaacactt |
115 |
Q |
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| T |
50226592 |
atccaaaaaatagtccagcaccaaatcaagtataacaccacaacaatcaatgttgctaggcattattttatccgtcaaatttcatcttcattcaacactt |
50226691 |
T |
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| Q |
116 |
tcaattttcacacggaccaatttggctggcttattggcagaagcatctccatcttccattcagacattgtcacttgaattggcactgtcggatgacc |
212 |
Q |
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| T |
50226692 |
tcaattttcacacggaccaatttggctggcatattggcaaaagtatctccatattccatacggacattgtcacttgaattggcattgtcggacgacc |
50226788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 245 - 351
Target Start/End: Original strand, 50226786 - 50226892
Alignment:
| Q |
245 |
accatttcgtcttggctgcatgaatctgcatgggaaataaattatatgcacttgataatctataatccatgtaagaatactaaattgtataccatagata |
344 |
Q |
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|||||||| |||||| || | |||||| ||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
50226786 |
accatttcatcttggttgaacgaatctccatgggaaataaattatatgcacttaataatctataatccgtgtaagaatactaaattgtataccatagata |
50226885 |
T |
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| Q |
345 |
atcttac |
351 |
Q |
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| T |
50226886 |
atcttac |
50226892 |
T |
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