View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12232_high_2 (Length: 347)
Name: NF12232_high_2
Description: NF12232
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12232_high_2 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 20 - 336
Target Start/End: Original strand, 29736381 - 29736697
Alignment:
| Q |
20 |
atgtatagggtattcatcttcatcatccatttgaatatcgaaatctggaacatggtaattcattttgcttcgcttctgtttagttgaattgaactgaaaa |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29736381 |
atgtatagggtattcatcttcatcatccatttgaatatcgaaatctggaacatggtaattcattttgcttcgcttctgtttagttgaattgaactgaaaa |
29736480 |
T |
|
| Q |
120 |
ggaaacaaataacaagcaattaaaattaaagtatcaagtagaaatagtaattaaattctaaaaaatgaacaacttactattgaagctagttagctgatcc |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29736481 |
ggaaacaaataacaagcaattaaaattaaagtatcaagtagaaatagtaattaaattctaaaaaatgaacaacttactattgaagctagttagctgatcc |
29736580 |
T |
|
| Q |
220 |
agaacatagtgagcaaattaaaactaagattaatttgtgtggagcttaaatttttgttgcttgatttgaatgaattgagtctatatcttaatcttaatct |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29736581 |
agaacatagtgagcaaattaaaactaagattaatttgtgtggagcttaaatttttgttgcttgatttgaatgaattgagtctatatcttaatcttaatct |
29736680 |
T |
|
| Q |
320 |
tatgctatgtatattat |
336 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
29736681 |
tatgctatgtatattat |
29736697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University