View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12233_low_1 (Length: 444)
Name: NF12233_low_1
Description: NF12233
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12233_low_1 |
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| [»] scaffold0649 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 390; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 1 - 430
Target Start/End: Original strand, 11384954 - 11385383
Alignment:
| Q |
1 |
atgagctggatagtgggtctgatagtgatgaagatggtgtgggcaaccctaaattcccaactttcaagatgccagtcagtatgaaaggctataaatggga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11384954 |
atgagctggatagtgggtctgatagtgatgaagatggtgtgggcaaccctaaattcccaactttcaagatgccagtcagtatgaaaggctataaatggga |
11385053 |
T |
|
| Q |
101 |
ggtaggtactttatttatgacaaaggttgaatttcaagatgctgttagaagttttgctgttgagaattgtaaggatttgaagttcnnnnnnnntgataaa |
200 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
11385054 |
ggtaggtactttatttatgacaaaggttgaatttcaagatgctgttagaagttttgctgttgagaattgtaaggatttgaagttcaaaaaaaatgataaa |
11385153 |
T |
|
| Q |
201 |
aggagagttgtagttgtttgcaagggtgaaggttgtgaatggaagatgtattgtgcacctattccaggtgaggaaacatggcagttgaggaaagttacag |
300 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11385154 |
aggagagttgtagttgtttgcaagggtgaaggttgtgaatggaagatgtattgtgcacctattccaggtgaggaaacatggcagttgaggaaagttacag |
11385253 |
T |
|
| Q |
301 |
ctgatgatcatacatgtggtacagaatttagagtgaagttgatgaactctaaatggctaggttctaaactacacacaagaataagagaggacaaggacat |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| |
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| T |
11385254 |
ctgatgatcatacatgtggtacagaatttagagtgaagttgatgaactctaaatggctaggttctaaactacacacaagagtaagagaggacagggacat |
11385353 |
T |
|
| Q |
401 |
aaatgttacaactattatggatagggcaca |
430 |
Q |
| |
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||| ||||||||||||||||| |||||||| |
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| T |
11385354 |
aaaggttacaactattatggacagggcaca |
11385383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 383; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 1 - 430
Target Start/End: Complemental strand, 21794381 - 21793951
Alignment:
| Q |
1 |
atgagctggatagtgggtctgatagtgatgaagatggtgtgggcaaccctaaattcccaactttcaagatgccagtcagtatgaaaggctataaatggga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21794381 |
atgagctggatagtgggtctgatagtgatgaagatggtgtgggcaaccctaaattcccaactttcaagatgccagtcagtatgaaaggctataaatggga |
21794282 |
T |
|
| Q |
101 |
ggtaggtactttatttatgacaaaggttgaatttcaagatgctgttagaagttttgctgttgagaattgtaaggatttgaagttcnnnnnnnn-tgataa |
199 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
21794281 |
ggtaggtactttatttatgacaaaggttgaatttcaagatgctgttagaagttttgctgttgagaattgtaaggatttgaagttcaaaaaaaaatgataa |
21794182 |
T |
|
| Q |
200 |
aaggagagttgtagttgtttgcaagggtgaaggttgtgaatggaagatgtattgtgcacctattccaggtgaggaaacatggcagttgaggaaagttaca |
299 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21794181 |
aaggagagttgtagttgtttgcaagggtgaaggttgtgaatggaagatgtattgtgcacctattccaggtgaggaaacatggcagttgaggaaagttaca |
21794082 |
T |
|
| Q |
300 |
gctgatgatcatacatgtggtacagaatttagagtgaagttgatgaactctaaatggctaggttctaaactacacacaagaataagagaggacaaggaca |
399 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| |
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| T |
21794081 |
gctgatgatcatacatgtggtacagaatttagagtgaagttgatgaactctaaatggctaggttctaaactacacacaagagtaagagaggacagggaca |
21793982 |
T |
|
| Q |
400 |
taaatgttacaactattatggatagggcaca |
430 |
Q |
| |
|
|||| ||||||||||||||||| |||||||| |
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|
| T |
21793981 |
taaaggttacaactattatggacagggcaca |
21793951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 95; Significance: 3e-46; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 2 - 379
Target Start/End: Complemental strand, 15814843 - 15814465
Alignment:
| Q |
2 |
tgagctggatagtgggtctgatagtgatgaagatggtgtgggcaaccctaaattcccaactttcaagatgccagtcagtatgaaaggctataaatgggag |
101 |
Q |
| |
|
||||||||||| ||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||| |||||||||| |||||||||||| |
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|
| T |
15814843 |
tgagctggataatggttctgatagtgatgaagatggtgtatagaaccccaaattcccaactttcaagatgccatgtagtatgaaagagtataaatgggag |
15814744 |
T |
|
| Q |
102 |
gtaggtactttatttatgacaaaggttgaatttcaagatgctgttagaagttttgctgttgagaattgtaaggatttgaagttcnnnnnnnntgataaaa |
201 |
Q |
| |
|
|| ||||||||||||||||||||| |||| |||||| ||| || ||||| || | |||| |||||| || |||||| ||||| ||||||| |
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| T |
15814743 |
gttggtactttatttatgacaaagattgattttcaacatgttgatagaacttattctgtggagaatgctagggatttaaagtttaggaaaaatgataaac |
15814644 |
T |
|
| Q |
202 |
ggagagttgtagttgtttgcaagggtgaaggttgtgaatggaagatgtattgtgcacctattccaggtgaggaaacatggcagttgaggaaagttacag- |
300 |
Q |
| |
|
|||| | ||| |||||| |||||||| ||| ||||| |||||| |||| | |||| ||||||||||||||||||||||| || |||| | |
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|
| T |
15814643 |
agagaatgagggtttattgcaaaggtgaaggctgtaaatgggagatgttctgtggtcatattaaaggtgaggaaacatggcagttgatgagtgttagtga |
15814544 |
T |
|
| Q |
301 |
ctgatgatcatacatgtggtacagaatttagagtgaagttgatgaactctaaatggctaggttctaaactacacacaag |
379 |
Q |
| |
|
| ||||||||||||| | |||| |||||||| ||| ||||||||||||||||| |||| ||||||||||||||||| |
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| T |
15814543 |
agggggatcatacatgtgctccagagtttagagttaagatgatgaactctaaatggttaggatctaaactacacacaag |
15814465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 12 - 184
Target Start/End: Original strand, 27654017 - 27654189
Alignment:
| Q |
12 |
agtgggtctgatagtgatgaagatggtgtgggcaaccctaaattcccaactttcaagatgccagtcagtatgaaaggctataaatgggaggtaggtactt |
111 |
Q |
| |
|
||||||||||| ||||||||| ||| || || || || |||| ||| ||| ||||||||| ||||||||| ||| |||||||||| || |||| |
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|
| T |
27654017 |
agtgggtctgacagtgatgaaaatgatgcaggaaatccacaatttccagtttttaagatgccaaatagtatgaaaaagtatgaatgggaggtgggaactt |
27654116 |
T |
|
| Q |
112 |
tatttatgacaaaggttgaatttcaagatgctgttagaagttttgctgttgagaattgtaaggatttgaagtt |
184 |
Q |
| |
|
|||||||||| |||||||| ||||| ||||||||||| |||||||||||||||| || ||||||||||| |
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|
| T |
27654117 |
tatttatgactaaggttgattttcagcttgctgttagaacttttgctgttgagaatgctagagatttgaagtt |
27654189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 340 - 379
Target Start/End: Original strand, 27654342 - 27654381
Alignment:
| Q |
340 |
tgatgaactctaaatggctaggttctaaactacacacaag |
379 |
Q |
| |
|
||||||||||||||||| |||| ||||||||||||||||| |
|
|
| T |
27654342 |
tgatgaactctaaatggttaggatctaaactacacacaag |
27654381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 12 - 184
Target Start/End: Complemental strand, 7564956 - 7564784
Alignment:
| Q |
12 |
agtgggtctgatagtgatgaagatggtgtgggcaaccctaaattcccaactttcaagatgccagtcagtatgaaaggctataaatgggaggtaggtactt |
111 |
Q |
| |
|
||||||||||| | ||||||||||| || || || || ||||| ||| ||| |||||||||| |||||||||| ||| |||||||||| || |||| |
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|
| T |
7564956 |
agtgggtctgacaatgatgaagatgatgcaggaaatccaaaatttccagtttttaagatgccagacagtatgaaaaagtatgaatgggaggtgggaactt |
7564857 |
T |
|
| Q |
112 |
tatttatgacaaaggttgaatttcaagatgctgttagaagttttgctgttgagaattgtaaggatttgaagtt |
184 |
Q |
| |
|
|||||||||| |||||||| ||||| ||||||||||| |||||||||||||||| || ||||||||||| |
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|
| T |
7564856 |
tatttatgactaaggttgattttcagcttgctgttagaacttttgctgttgagaatgctagagatttgaagtt |
7564784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 340 - 389
Target Start/End: Complemental strand, 7564631 - 7564582
Alignment:
| Q |
340 |
tgatgaactctaaatggctaggttctaaactacacacaagaataagagag |
389 |
Q |
| |
|
||||||||||||||||| |||| ||||||| ||||||||| |||||||| |
|
|
| T |
7564631 |
tgatgaactctaaatggttaggatctaaacgacacacaagggtaagagag |
7564582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0649 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: scaffold0649
Description:
Target: scaffold0649; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 105 - 379
Target Start/End: Complemental strand, 2042 - 1768
Alignment:
| Q |
105 |
ggtactttatttatgacaaaggttgaatttcaagatgctgttagaagttttgctgttgagaattgtaaggatttgaagttcnnnnnnnntgataaaagga |
204 |
Q |
| |
|
||||||||||||||||||||| |||| |||||| ||| |||||||| || |||||| |||||| || |||||| ||||| ||||||| | |
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|
| T |
2042 |
ggtactttatttatgacaaagattgactttcaacatgttgttagaacttatgctgtggagaatgctagggatttaaagtttagaaaaaatgataaacata |
1943 |
T |
|
| Q |
205 |
gagttgtagttgtttgcaagggtgaaggttgtgaatggaagatgtattgtgcacctattccaggtgaggaaacatggcagttgaggaaagttacagctga |
304 |
Q |
| |
|
|| | ||| |||||| |||||||| ||||| ||| |||||| ||||| |||| |||||||||||||||||||||||||| |||| |
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|
| T |
1942 |
gaatgagggtttattgcaaaggtgaaggctgtgagtggcagatgttctgtgctaatattaaaggtgaggaaacatggcagttgaggagtgttaataaaag |
1843 |
T |
|
| Q |
305 |
tgatcatacatgtggtacagaatttagagtgaagttgatgaactctaaatggctaggttctaaactacacacaag |
379 |
Q |
| |
|
||||||||||||| | |||| | |||||| ||| ||||||| ||||||||| |||| ||||||||||||||||| |
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|
| T |
1842 |
ggatcatacatgtgctccagagtatagagttaagatgatgaattctaaatggttaggatctaaactacacacaag |
1768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0649; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 2 - 73
Target Start/End: Complemental strand, 2115 - 2044
Alignment:
| Q |
2 |
tgagctggatagtgggtctgatagtgatgaagatggtgtgggcaaccctaaattcccaactttcaagatgcc |
73 |
Q |
| |
|
||||||||||||||| || ||||||||||||||||| ||| |||| ||||||||||||||||||||||| |
|
|
| T |
2115 |
tgagctggatagtggttcagatagtgatgaagatggagtgcagaacctcaaattcccaactttcaagatgcc |
2044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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