View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12233_low_2 (Length: 417)

Name: NF12233_low_2
Description: NF12233
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12233_low_2
NF12233_low_2
[»] chr6 (13 HSPs)
chr6 (96-410)||(23256296-23256610)
chr6 (167-329)||(23253755-23253920)
chr6 (140-219)||(33670586-33670665)
chr6 (50-103)||(23253918-23253971)
chr6 (308-405)||(8855262-8855360)
chr6 (321-403)||(17163551-17163633)
chr6 (27-129)||(7728581-7728684)
chr6 (264-322)||(7728399-7728458)
chr6 (137-213)||(3595375-3595451)
chr6 (321-403)||(27552259-27552341)
chr6 (166-219)||(11421758-11421811)
chr6 (368-408)||(3596496-3596536)
chr6 (321-401)||(8315653-8315733)
[»] chr8 (11 HSPs)
chr8 (27-397)||(17782054-17782431)
chr8 (52-321)||(17786219-17786496)
chr8 (30-219)||(2601637-2601827)
chr8 (151-219)||(3755661-3755729)
chr8 (326-403)||(43807637-43807714)
chr8 (321-403)||(197833-197915)
chr8 (321-403)||(312670-312752)
chr8 (321-403)||(1291250-1291332)
chr8 (321-403)||(30405952-30406034)
chr8 (365-403)||(31473348-31473386)
chr8 (321-403)||(41949728-41949810)
[»] chr5 (10 HSPs)
chr5 (23-321)||(16117589-16117886)
chr5 (168-409)||(25632647-25632876)
chr5 (317-409)||(26454402-26454494)
chr5 (321-403)||(26336956-26337038)
chr5 (321-403)||(7099523-7099605)
chr5 (321-403)||(10277130-10277212)
chr5 (321-403)||(12023215-12023297)
chr5 (321-403)||(16798595-16798677)
chr5 (321-403)||(37681962-37682044)
chr5 (321-403)||(40367749-40367831)
[»] chr2 (4 HSPs)
chr2 (135-321)||(28447835-28448023)
chr2 (321-403)||(35950587-35950669)
chr2 (321-403)||(8055318-8055400)
chr2 (321-403)||(36674977-36675059)
[»] chr7 (4 HSPs)
chr7 (137-409)||(22580847-22581120)
chr7 (321-403)||(7940232-7940314)
chr7 (321-403)||(27761323-27761405)
chr7 (161-219)||(7678762-7678820)
[»] scaffold0321 (2 HSPs)
scaffold0321 (67-270)||(13798-13998)
scaffold0321 (21-50)||(13767-13796)
[»] chr4 (5 HSPs)
chr4 (137-215)||(53976961-53977039)
chr4 (321-403)||(31359078-31359159)
chr4 (321-403)||(44151484-44151566)
chr4 (321-403)||(50628079-50628161)
chr4 (137-213)||(29258494-29258570)
[»] chr1 (2 HSPs)
chr1 (321-403)||(26315939-26316021)
chr1 (321-403)||(43591970-43592052)
[»] scaffold0044 (1 HSPs)
scaffold0044 (321-403)||(45014-45096)
[»] chr3 (3 HSPs)
chr3 (321-403)||(54167493-54167575)
chr3 (140-213)||(446877-446950)
chr3 (310-374)||(1299022-1299087)
[»] scaffold0440 (2 HSPs)
scaffold0440 (321-401)||(2908-2988)
scaffold0440 (321-401)||(7434-7514)


Alignment Details
Target: chr6 (Bit Score: 287; Significance: 1e-161; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 96 - 410
Target Start/End: Complemental strand, 23256610 - 23256296
Alignment:
Q  96 attgtgaattcattagattgtaaattacacatacctggagtttatatacatggttttgttaagtagcttgagaaacaagtcatctctcaacacctaacta 195  Q
    |||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  23256610 attgtgaattcattagattgtaaattacacatacatagagtttatatacatggttttgttaagtagcttgagaaacaagtcatctctcaaaacctaacta 23256511  T
Q  196 ccttatgctaaaatctagcaaaaacagtaacaaactaataaccaactataaccaacttggttacaatgtgttttagccaaacaagccttgattaaaacac 295  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||    
T  23256510 ccttatgctaaaatctagcaaaaacagtaacaaactaataaccaactataagcaacttggttacaatgtgttttaaccaaacaagccttgattaaaacac 23256411  T
Q  296 taatcaactatactaacttgaattaaaaccaacatcctcccttaattctggtttccattttcaccataccagtcaagctgcttagcttgatgaacctgtc 395  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||    
T  23256410 taatcaactatactaacttgaattaaaaccaacatcctcccttaattctggtttccattttcaccaaaccagtcaagcttcttagcttgatgaacctgtc 23256311  T
Q  396 aaccttcacaggttc 410  Q
    |||||||||||||||    
T  23256310 aaccttcacaggttc 23256296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 167 - 329
Target Start/End: Complemental strand, 23253920 - 23253755
Alignment:
Q  167 gaaacaagtcatctctcaacacctaactaccttatgctaaaatctagcaaaaacagt--aacaaactaataaccaactataaccaacttggttacaatgt 264  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||  || |||||||||||||||||||||||| |||||||||||||    
T  23253920 gaaacaagtcatctctcaaaacctaactaccttatgctaaaatctagcaaaaacagtaaaaaaaactaataaccaactataaccaatttggttacaatgt 23253821  T
Q  265 gttttagccaaac-aagccttgattaaaacactaatcaactatactaacttgaattaaaaccaaca 329  Q
    |||||| |||||| |||||||||||||||  |||||||||||||||||||| ||||||||||||||    
T  23253820 gttttaaccaaacaaagccttgattaaaatgctaatcaactatactaacttaaattaaaaccaaca 23253755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 140 - 219
Target Start/End: Complemental strand, 33670665 - 33670586
Alignment:
Q  140 tatacatggttttgttaagtagcttgagaaacaagtcatctctcaacacctaactaccttatgctaaaatctagcaaaaa 219  Q
    |||||| ||| ||||| ||| |||||||||||||||||||||||||  |||||| || | ||||||||||||||||||||    
T  33670665 tatacaaggtgttgttgagttgcttgagaaacaagtcatctctcaaaccctaacaacataatgctaaaatctagcaaaaa 33670586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 50 - 103
Target Start/End: Complemental strand, 23253971 - 23253918
Alignment:
Q  50 taagagaataagaaaaagagagaatgagaagattagaattatgtaaattgtgaa 103  Q
    |||||||| ||||| |||||||||| ||||||||||||||||||||||||||||    
T  23253971 taagagaacaagaagaagagagaattagaagattagaattatgtaaattgtgaa 23253918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 308 - 405
Target Start/End: Original strand, 8855262 - 8855360
Alignment:
Q  308 ctaacttgaattaaaaccaacatcctcccttaattc-tggtttccattttcaccataccagtcaagctgcttagcttgatgaacctgtcaaccttcaca 405  Q
    ||||||||||||||||| ||||||||||||||||||  | ||||||  |||||||| ||| ||||||| || |||||| | ||||| |||| |||||||    
T  8855262 ctaacttgaattaaaactaacatcctcccttaattcaagttttccaacttcaccattccaatcaagcttctgagcttgttaaacctttcaatcttcaca 8855360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 321 - 403
Target Start/End: Complemental strand, 17163633 - 17163551
Alignment:
Q  321 aaaccaacatcctcccttaattctggtttccattttcaccataccagtcaagctgcttagcttgatgaacctgtcaaccttca 403  Q
    |||| ||||||||||||||||||  ||||||| || |  ||||||| ||||||| || ||||||||||| |||||||||||||    
T  17163633 aaactaacatcctcccttaattcaagtttccacttccttcataccaatcaagcttctgagcttgatgaatctgtcaaccttca 17163551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 27 - 129
Target Start/End: Complemental strand, 7728684 - 7728581
Alignment:
Q  27 tagggtttttgattattggaatttaaga-gaataagaaaaagagagaatgagaagattagaattatgt-aaattgtgaattcattagattgtaaattaca 124  Q
    ||||| |||||||| | ||||||||| | ||||||||| ||| |||||||||||| ||  || ||||| |||||||||||||||||| |||| |||||||    
T  7728684 tagggattttgattttaggaatttaaaaagaataagaagaagtgagaatgagaaggtttaaagtatgtaaaattgtgaattcattag-ttgtgaattaca 7728586  T
Q  125 catac 129  Q
    |||||    
T  7728585 catac 7728581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 264 - 322
Target Start/End: Complemental strand, 7728458 - 7728399
Alignment:
Q  264 tgttttagccaaacaagccttgattaaaa-cactaatcaactatactaacttgaattaaa 322  Q
    ||||||| |||||||| |||||||||||| ||||||||| ||| ||||||||||||||||    
T  7728458 tgttttaaccaaacaaaccttgattaaaaacactaatcatctaaactaacttgaattaaa 7728399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 137 - 213
Target Start/End: Complemental strand, 3595451 - 3595375
Alignment:
Q  137 ttatatacatggttttgttaagtagcttgagaaacaagtcatctctcaacacctaactaccttatgctaaaatctag 213  Q
    |||||||||| |||||||||||| |||||| | |||||| |||| ||||  |||||| ||||||||||  |||||||    
T  3595451 ttatatacattgttttgttaagttgcttgaaagacaagtaatctatcaaaccctaacaaccttatgcttgaatctag 3595375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 321 - 403
Target Start/End: Original strand, 27552259 - 27552341
Alignment:
Q  321 aaaccaacatcctcccttaattctggtttccattttcaccataccagtcaagctgcttagcttgatgaacctgtcaaccttca 403  Q
    |||| ||||||||||||||||||  ||||||| || |  ||| ||| ||||||| || |||||||||||  ||||||||||||    
T  27552259 aaactaacatcctcccttaattcaagtttccacttccttcattccaatcaagcttctgagcttgatgaatatgtcaaccttca 27552341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 166 - 219
Target Start/End: Original strand, 11421758 - 11421811
Alignment:
Q  166 agaaacaagtcatctctcaacacctaactaccttatgctaaaatctagcaaaaa 219  Q
    |||||||| ||| |||||||  |||||| |||| ||||||||||||||||||||    
T  11421758 agaaacaaatcagctctcaaatcctaacaacctaatgctaaaatctagcaaaaa 11421811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 368 - 408
Target Start/End: Complemental strand, 3596536 - 3596496
Alignment:
Q  368 tcaagctgcttagcttgatgaacctgtcaaccttcacaggt 408  Q
    ||||||| |||||||||||||||||| ||||||||| ||||    
T  3596536 tcaagcttcttagcttgatgaacctgccaaccttcagaggt 3596496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 321 - 401
Target Start/End: Original strand, 8315653 - 8315733
Alignment:
Q  321 aaaccaacatcctcccttaattctggtttccattttcaccataccagtcaagctgcttagcttgatgaacctgtcaacctt 401  Q
    |||| ||||||||||||||||||  ||||||| || |  ||| ||| |||| || || ||||||||||| |||||||||||    
T  8315653 aaactaacatcctcccttaattcaagtttccacttccttcattccaatcaaacttctgagcttgatgaatctgtcaacctt 8315733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 164; Significance: 2e-87; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 27 - 397
Target Start/End: Original strand, 17782054 - 17782431
Alignment:
Q  27 tagggtttttgattattggaattta-agagaataagaaaaagagagaatgagaagattagaattatgtaaattgtgaattcattagattgtaaattacac 125  Q
    ||||||||||||||||||||||||  |||||||||||| ||||||||||| ||||||||||| | ||||||||||||||||||||| |||| ||||||||    
T  17782054 tagggtttttgattattggaattttgagagaataagaagaagagagaatgtgaagattagaactttgtaaattgtgaattcattag-ttgtgaattacac 17782152  T
Q  126 atacctggagtttatatacatggttttgttaagtagcttgagaaacaagtcatctctcaacacctaactaccttatgctaaaatctagcaaaaacagtaa 225  Q
    |||| | ||| |||||||||| |||||| || |||| || |||||||||| ||||| |||  |||||| || ||||||||||| || || ||||  ||||    
T  17782153 atacat-gagcttatatacattgttttgctaggtagtttaagaaacaagttatctcccaaaccctaacaactttatgctaaaaccttgctaaaattgtaa 17782251  T
Q  226 caaactaataaccaa--------ctataaccaacttggttacaatgtgttttagccaaacaagccttgattaaaacactaatcaactatactaacttgaa 317  Q
    ||||||||||| |||        |||||||||||||||| ||||| ||||||| |||||||||| |||||||||||| ||||| |||| |||||||||||    
T  17782252 caaactaataatcaactatatgtctataaccaacttggtgacaatatgttttaaccaaacaagctttgattaaaacattaatc-actacactaacttgaa 17782350  T
Q  318 ttaa-aaccaacatcctcccttaattctggtttccattttcaccataccagtcaagctgcttagcttgatgaacctgtcaa 397  Q
    |||| ||| ||||||||||||||||||  ||||||| ||||||||||||| ||||||| ||||||||||||||||||||||    
T  17782351 ttaacaactaacatcctcccttaattcaagtttccactttcaccataccaatcaagcttcttagcttgatgaacctgtcaa 17782431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 52 - 321
Target Start/End: Original strand, 17786219 - 17786496
Alignment:
Q  52 agagaataagaaaaagagagaatgagaagattagaattatgtaaattgtgaattcattagattgtaaattacacatacctggagtttatatacatggttt 151  Q
    |||||||||||| |||||||||||| || ||||||||| ||||||||||||||| |||||||||| |||||||||| | | ||| |||||||||||||||    
T  17786219 agagaataagaagaagagagaatgaaaatattagaattgtgtaaattgtgaatttattagattgtgaattacacatgcat-gagcttatatacatggttt 17786317  T
Q  152 tgttaagtagcttgagaaacaagtcatctctcaacacctaactaccttatgctaaaatctagcaaaaacagtaacaaact----------aataaccaac 241  Q
    |  || ||| ||| |||||||||||||||| |||  |||||||||||||||||||||  |||| ||||   |||||||||          ||||||||||    
T  17786318 ttctaggtaacttaagaaacaagtcatctcccaaaccctaactaccttatgctaaaacgtagctaaaattataacaaactttaacaattgaataaccaac 17786417  T
Q  242 tataaccaacttggttacaatgtgttttagccaaacaagccttgattaaaacactaatcaactatactaacttgaattaa 321  Q
    |||| |||||| ||||||||||||||||| |||||||| ||||||||||||||||||||| | |||||||||||||||||    
T  17786418 tatatccaactgggttacaatgtgttttaaccaaacaatccttgattaaaacactaatcatc-atactaacttgaattaa 17786496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 30 - 219
Target Start/End: Original strand, 2601637 - 2601827
Alignment:
Q  30 ggtttttgattattggaatt-taagagaataagaa-aaagagagaatgagaagattagaattatgtaaattgtgaattcattagattgtaaattacacat 127  Q
    |||||||||||||||||| | | |||||||| ||| ||| |||||| ||| |||||||| ||||||||||||||| |||||||  || | ||| ||||||    
T  2601637 ggtttttgattattggaaatatgagagaataggaagaaaaagagaacgaggagattagagttatgtaaattgtgatttcattaagttatgaatcacacat 2601736  T
Q  128 acctggagtttatatacatggttttgttaagtagcttgagaaacaagtcatctctcaacacctaactaccttatgctaaaatctagcaaaaa 219  Q
    | |    | |||||||||  || ||||| ||| ||| |||||||||||||||||||||  | |||| ||||  ||||||||  |||||||||    
T  2601737 a-caaatgcttatatacaaagtgttgttgagttgctcgagaaacaagtcatctctcaaaccttaacaacctagtgctaaaaattagcaaaaa 2601827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 151 - 219
Target Start/End: Original strand, 3755661 - 3755729
Alignment:
Q  151 ttgttaagtagcttgagaaacaagtcatctctcaacacctaactaccttatgctaaaatctagcaaaaa 219  Q
    ||||| ||| ||||||||||||||| |||||||||  |||||  |||| ||||||||||||||||||||    
T  3755661 ttgttgagttgcttgagaaacaagtgatctctcaaaccctaagaacctaatgctaaaatctagcaaaaa 3755729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 326 - 403
Target Start/End: Original strand, 43807637 - 43807714
Alignment:
Q  326 aacatcctcccttaattctggtttccattttcaccataccagtcaagctgcttagcttgatgaacctgtcaaccttca 403  Q
    ||||||||||||||||||  ||||||| || |  ||| ||| ||||||| || ||||||||||| |||||||||||||    
T  43807637 aacatcctcccttaattcaagtttccacttccttcattccaatcaagcttctgagcttgatgaatctgtcaaccttca 43807714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 321 - 403
Target Start/End: Original strand, 197833 - 197915
Alignment:
Q  321 aaaccaacatcctcccttaattctggtttccattttcaccataccagtcaagctgcttagcttgatgaacctgtcaaccttca 403  Q
    |||| ||||||||||||||||||  ||||||| || |  ||| ||| |||| || || ||||||||||| |||||||||||||    
T  197833 aaactaacatcctcccttaattcaagtttccacttccttcattccaatcaaacttctgagcttgatgaatctgtcaaccttca 197915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 321 - 403
Target Start/End: Original strand, 312670 - 312752
Alignment:
Q  321 aaaccaacatcctcccttaattctggtttccattttcaccataccagtcaagctgcttagcttgatgaacctgtcaaccttca 403  Q
    |||| ||||||||||||||||||  ||||||| || |  ||| ||| |||| || || ||||||||||| |||||||||||||    
T  312670 aaactaacatcctcccttaattcaagtttccacttccttcattccaatcaaacttctgagcttgatgaatctgtcaaccttca 312752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 321 - 403
Target Start/End: Complemental strand, 1291332 - 1291250
Alignment:
Q  321 aaaccaacatcctcccttaattctggtttccattttcaccataccagtcaagctgcttagcttgatgaacctgtcaaccttca 403  Q
    |||| ||||||||||||||||||  ||||||| || |  ||| ||| ||||||| || || |||||||| |||||||||||||    
T  1291332 aaactaacatcctcccttaattcaagtttccacttccttcattccaatcaagcttctgagtttgatgaatctgtcaaccttca 1291250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 321 - 403
Target Start/End: Original strand, 30405952 - 30406034
Alignment:
Q  321 aaaccaacatcctcccttaattctggtttccattttcaccataccagtcaagctgcttagcttgatgaacctgtcaaccttca 403  Q
    |||| ||||||||||||||||||  ||||||| || |  ||| ||| ||||||| || ||||||||||| ||||||| |||||    
T  30405952 aaactaacatcctcccttaattcaagtttccacttccttcattccaatcaagcttctgagcttgatgaatctgtcaatcttca 30406034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 365 - 403
Target Start/End: Original strand, 31473348 - 31473386
Alignment:
Q  365 cagtcaagctgcttagcttgatgaacctgtcaaccttca 403  Q
    ||||||| || ||||||||||||||||||||||||||||    
T  31473348 cagtcaaacttcttagcttgatgaacctgtcaaccttca 31473386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 321 - 403
Target Start/End: Complemental strand, 41949810 - 41949728
Alignment:
Q  321 aaaccaacatcctcccttaattctggtttccattttcaccataccagtcaagctgcttagcttgatgaacctgtcaaccttca 403  Q
    |||| ||||||||||||||||||  ||||||| || |  ||| | | ||||||| || ||||||||||| |||||||||||||    
T  41949810 aaactaacatcctcccttaattcaagtttccacttccttcattcaaatcaagcttctgagcttgatgaaactgtcaaccttca 41949728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 116; Significance: 7e-59; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 23 - 321
Target Start/End: Complemental strand, 16117886 - 16117589
Alignment:
Q  23 tttttagggtttttgattattggaattta-agagaataagaaaaagagagaatgagaagattagaattatgtaaattgtgaattcattagattgtaaatt 121  Q
    |||||||||| |||||||||||||||||  | | |||||||| ||| | ||| ||||||| || ||||||||||||||||||| ||||| ||||| ||||    
T  16117886 tttttagggtgtttgattattggaattttgaaacaataagaagaagtgggaaagagaagaatataattatgtaaattgtgaatccattaaattgtgaatt 16117787  T
Q  122 acacatacctggagtttatatacatggttttgttaagtagcttgagaaacaagtcatctctcaacacctaactaccttatgctaaaatctagcaaaaaca 221  Q
    ||||||||  |  | ||||||||||||||||||||||| ||||||| |||||||||||||||||  || |||||||||||||||||||| ||| |||||     
T  16117786 acacatacaagt-gcttatatacatggttttgttaagttgcttgaggaacaagtcatctctcaaaccccaactaccttatgctaaaatcaagc-aaaacc 16117689  T
Q  222 gtaacaaactaataaccaactataaccaacttggttacaatgtgttttagccaaacaagccttgattaaaacactaatcaactatactaacttgaattaa 321  Q
    |||||||| |  |||| ||||| | | |||||| |||| ||||| |||| |||||||||  ||||||||| ||||||||||||| |||| ||||||||||    
T  16117688 gtaacaaagttttaacaaactaaatctaacttgattactatgtgatttaaccaaacaagttttgattaaatcactaatcaactacactatcttgaattaa 16117589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 168 - 409
Target Start/End: Complemental strand, 25632876 - 25632647
Alignment:
Q  168 aaacaagtcatctctcaacacctaactaccttatgctaaaatctagcaaaaacagtaacaaactaataaccaactataaccaacttggttacaatgtgtt 267  Q
    |||||||||||||| |||  |||||||||||| |||||||||||||| ||||| | ||||||||      |||    ||| ||||||||||| |||||||    
T  25632876 aaacaagtcatctcccaaaccctaactacctt-tgctaaaatctagctaaaac-gaaacaaact------caa----aacaaacttggttactatgtgtt 25632789  T
Q  268 ttagccaaacaagccttgattaaaacactaatcaactatactaacttgaattaaaaccaacatcctcccttaattctggtttccattttcaccataccag 367  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||  |||| || | |||||||||||     
T  25632788 ttaaccaaacaagccttgattaaaacactaatcaactatactaacttgaattaaaactaacatccttccttaattcaagttttcactctcaccataccaa 25632689  T
Q  368 tcaagctgcttagcttgatgaacctgtcaaccttcacaggtt 409  Q
    ||| ||| || || ||||||||| ||||||||||||||||||    
T  25632688 tcaggcttctcagtttgatgaacatgtcaaccttcacaggtt 25632647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 317 - 409
Target Start/End: Original strand, 26454402 - 26454494
Alignment:
Q  317 attaaaaccaacatcctcccttaattctggtttccattttcaccataccagtcaagctgcttagcttgatgaacctgtcaaccttcacaggtt 409  Q
    |||||||| ||| ||||||||||||||  ||||||| ||  ||||||||| ||| ||| ||||||||||||||  |||||||||||| |||||    
T  26454402 attaaaactaacttcctcccttaattcaagtttccacttcaaccataccaatcatgctccttagcttgatgaatatgtcaaccttcaaaggtt 26454494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 321 - 403
Target Start/End: Original strand, 26336956 - 26337038
Alignment:
Q  321 aaaccaacatcctcccttaattctggtttccattttcaccataccagtcaagctgcttagcttgatgaacctgtcaaccttca 403  Q
    |||| ||||||||||||||||||  ||||||| || |  ||| ||| ||||||| || |||||||||||||||||||||||||    
T  26336956 aaactaacatcctcccttaattcaagtttccacttccttcattccaatcaagcttctgagcttgatgaacctgtcaaccttca 26337038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 321 - 403
Target Start/End: Original strand, 7099523 - 7099605
Alignment:
Q  321 aaaccaacatcctcccttaattctggtttccattttcaccataccagtcaagctgcttagcttgatgaacctgtcaaccttca 403  Q
    |||| ||||||||||||||||||  ||||||| || |  ||| ||| ||||||| || ||||||||||| |||||||||||||    
T  7099523 aaactaacatcctcccttaattcaagtttccacttccttcattccaatcaagcttctgagcttgatgaatctgtcaaccttca 7099605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 321 - 403
Target Start/End: Complemental strand, 10277212 - 10277130
Alignment:
Q  321 aaaccaacatcctcccttaattctggtttccattttcaccataccagtcaagctgcttagcttgatgaacctgtcaaccttca 403  Q
    |||| ||||||||| ||||||||  ||||||| || |  ||| ||| ||||||| || |||||||||||||||||||||||||    
T  10277212 aaactaacatcctctcttaattcgagtttccacttccttcattccaatcaagcttctgagcttgatgaacctgtcaaccttca 10277130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 321 - 403
Target Start/End: Complemental strand, 12023297 - 12023215
Alignment:
Q  321 aaaccaacatcctcccttaattctggtttccattttcaccataccagtcaagctgcttagcttgatgaacctgtcaaccttca 403  Q
    |||| ||||||||||||||||||  ||||||| || |  ||| ||| ||||||| || ||||||||||| |||||||||||||    
T  12023297 aaactaacatcctcccttaattcaagtttccacttccttcattccaatcaagcttctgagcttgatgaatctgtcaaccttca 12023215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 321 - 403
Target Start/End: Complemental strand, 16798677 - 16798595
Alignment:
Q  321 aaaccaacatcctcccttaattctggtttccattttcaccataccagtcaagctgcttagcttgatgaacctgtcaaccttca 403  Q
    |||| ||||||||||||||||||  ||||||| || |  ||| ||| ||||||| || ||||||||||| |||||||||||||    
T  16798677 aaactaacatcctcccttaattcaagtttccacttccttcattccaatcaagcttctgagcttgatgaatctgtcaaccttca 16798595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 321 - 403
Target Start/End: Complemental strand, 37682044 - 37681962
Alignment:
Q  321 aaaccaacatcctcccttaattctggtttccattttcaccataccagtcaagctgcttagcttgatgaacctgtcaaccttca 403  Q
    |||| ||||||||||||||||||  ||||||| || |  ||| ||| ||||||| || ||||||||||| |||||||||||||    
T  37682044 aaactaacatcctcccttaattcaagtttccacttccttcattccaatcaagcttctgagcttgatgaatctgtcaaccttca 37681962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 321 - 403
Target Start/End: Original strand, 40367749 - 40367831
Alignment:
Q  321 aaaccaacatcctcccttaattctggtttccattttcaccataccagtcaagctgcttagcttgatgaacctgtcaaccttca 403  Q
    |||| ||||||||||||||||||  ||||||| || |  ||| ||| ||||||| || ||||||||||| |||||||||||||    
T  40367749 aaactaacatcctcccttaattcaagtttccacttccttcattccaatcaagcttctgagcttgatgaatctgtcaaccttca 40367831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 74; Significance: 8e-34; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 135 - 321
Target Start/End: Complemental strand, 28448023 - 28447835
Alignment:
Q  135 gtttatatacatggttttgttaagtagcttgagaaacaagtcatctctcaacacctaactaccttatgctaaaatctagcaaaaacagtaacaaactaat 234  Q
    ||||||||||||| ||||| || |||||||||||||||||||||||| |||  ||||||||||||||||||||| | ||||||| | ||||||||||  |    
T  28448023 gtttatatacatg-ttttgctaggtagcttgagaaacaagtcatctcccaaaccctaactaccttatgctaaaagcaagcaaaatctgtaacaaactttt 28447925  T
Q  235 aaccaac----tataaccaacttggttacaatgtgttttagccaaacaagccttgattaaaacactaatcaactatactaacttgaattaa 321  Q
    ||| |||    || ||| |||||| |||| || || |||| || |||||| |||||||||| |||||||||||||||||||||||||||||    
T  28447924 aacaaacaaattaaaactaacttgattactatatgatttaacc-aacaagacttgattaaatcactaatcaactatactaacttgaattaa 28447835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 321 - 403
Target Start/End: Original strand, 35950587 - 35950669
Alignment:
Q  321 aaaccaacatcctcccttaattctggtttccattttcaccataccagtcaagctgcttagcttgatgaacctgtcaaccttca 403  Q
    |||| ||||||||||||||||||  ||||||| || |  ||| ||| ||||||| || |||||||||||||||||||||||||    
T  35950587 aaactaacatcctcccttaattcaagtttccacttccttcattccaatcaagcttctaagcttgatgaacctgtcaaccttca 35950669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 321 - 403
Target Start/End: Complemental strand, 8055400 - 8055318
Alignment:
Q  321 aaaccaacatcctcccttaattctggtttccattttcaccataccagtcaagctgcttagcttgatgaacctgtcaaccttca 403  Q
    |||| ||||||||||||||||||  ||||||| || |  ||| ||| ||||||| || ||||||||||| |||||||||||||    
T  8055400 aaactaacatcctcccttaattcaagtttccacttccttcattccaatcaagcttctgagcttgatgaatctgtcaaccttca 8055318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 321 - 403
Target Start/End: Complemental strand, 36675059 - 36674977
Alignment:
Q  321 aaaccaacatcctcccttaattctggtttccattttcaccataccagtcaagctgcttagcttgatgaacctgtcaaccttca 403  Q
    |||| ||||||||||| ||||||  ||||||| || |  ||| ||| ||||||| || ||||||||||| |||||||||||||    
T  36675059 aaactaacatcctcccgtaattcaagtttccacttccttcattccaatcaagcttctgagcttgatgaatctgtcaaccttca 36674977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 66; Significance: 5e-29; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 137 - 409
Target Start/End: Complemental strand, 22581120 - 22580847
Alignment:
Q  137 ttatatacatggttttgttaagtagcttgagaaacaagtcatctctcaacacctaactaccttatgctaaaatctagcaaaaacagtaacaaacta-ata 235  Q
    ||||||||| ||| || || |||  |||||||| |||||| ||||||||  |||||| |||| ||| ||||||||||||||||  ||||| ||||  |||    
T  22581120 ttatatacaaggtgttattgagtttcttgagaagcaagtcctctctcaaaccctaacaacctaatgataaaatctagcaaaaat-gtaactaacttcata 22581022  T
Q  236 accaactataaccaacttggttacaatgtgtt-ttagccaaacaagccttgattaaaacactaatcaactatactaacttgaattaa--aaccaacatcc 332  Q
    || ||| | ||  |||||| |||| ||||| | ||| |||||||| ||||||||||  |||||||||  ||| ||||||||||||||  ||| |||||||    
T  22581021 acaaacaa-aattaacttgattactatgtgatcttaaccaaacaa-ccttgattaagtcactaatcacttattctaacttgaattaacaaactaacatcc 22580924  T
Q  333 tcccttaattctggtttccattttcaccataccagtcaagctgcttagcttgatgaacctgtcaaccttcacaggtt 409  Q
    |||||||||||  ||||||| ||||||||||| | | | ||| ||||||||||||||| |||||||||||| |||||    
T  22580923 tcccttaattcaagtttccactttcaccatactaattatgcttcttagcttgatgaacgtgtcaaccttcataggtt 22580847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 321 - 403
Target Start/End: Original strand, 7940232 - 7940314
Alignment:
Q  321 aaaccaacatcctcccttaattctggtttccattttcaccataccagtcaagctgcttagcttgatgaacctgtcaaccttca 403  Q
    |||| ||||||||||||||||||  ||||||| || |  ||| ||| ||||||| || ||||||||||| |||||||||||||    
T  7940232 aaactaacatcctcccttaattcaagtttccacttccttcattccaatcaagcttctgagcttgatgaatctgtcaaccttca 7940314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 321 - 403
Target Start/End: Complemental strand, 27761405 - 27761323
Alignment:
Q  321 aaaccaacatcctcccttaattctggtttccattttcaccataccagtcaagctgcttagcttgatgaacctgtcaaccttca 403  Q
    |||| ||||||||||||||||||  ||||||| || |  ||| ||| ||||||| || ||||||||||| |||||||||||||    
T  27761405 aaactaacatcctcccttaattcaagtttccacttccttcattccaatcaagcttctgagcttgatgaatctgtcaaccttca 27761323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 161 - 219
Target Start/End: Original strand, 7678762 - 7678820
Alignment:
Q  161 gcttgagaaacaagtcatctctcaacacctaactaccttatgctaaaatctagcaaaaa 219  Q
    |||||||||||||||||||||  ||  |||||  |||| ||||||||||||||||||||    
T  7678762 gcttgagaaacaagtcatctccaaaaccctaataacctaatgctaaaatctagcaaaaa 7678820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0321 (Bit Score: 64; Significance: 7e-28; HSPs: 2)
Name: scaffold0321
Description:

Target: scaffold0321; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 67 - 270
Target Start/End: Original strand, 13798 - 13998
Alignment:
Q  67 gagagaatgagaagattagaattatgtaaattgtgaattcattagattgtaaattacacatacctggagtttatatacatggttttgttaagtagcttga 166  Q
    |||||||| || ||||||||||| |||||||||||||||||||  | ||| |||||||| |||  |  | |||||||||| |||||||||||| ||||||    
T  13798 gagagaataaggagattagaattgtgtaaattgtgaattcattgaaatgtgaattacacgtacaagt-gcttatatacattgttttgttaagttgcttga 13896  T
Q  167 gaaacaagtcatctctcaacacctaactaccttatgctaaaatctagcaaaaacagtaacaaactaataaccaactataaccaacttggttacaatgtgt 266  Q
    |||||||||||||||||||  ||||| ||||||||| ||||| | ||| ||||| ||||||||||  |||| ||| | ||| |||||| |||| |||||     
T  13897 gaaacaagtcatctctcaaaccctaattaccttatg-taaaaacaagc-aaaactgtaacaaacttttaacgaaccaaaactaacttgattactatgtga 13994  T
Q  267 ttta 270  Q
    ||||    
T  13995 ttta 13998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0321; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 50
Target Start/End: Original strand, 13767 - 13796
Alignment:
Q  21 ggtttttagggtttttgattattggaattt 50  Q
    ||||||||||||||||||||||||||||||    
T  13767 ggtttttagggtttttgattattggaattt 13796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 137 - 215
Target Start/End: Complemental strand, 53977039 - 53976961
Alignment:
Q  137 ttatatacatggttttgttaagtagcttgagaaacaagtcatctctcaacacctaactaccttatgctaaaatctagca 215  Q
    ||||||||| ||| ||||| ||| || ||||||||||||||||||||||  |||||| |||| ||||||||||||||||    
T  53977039 ttatatacaaggtgttgttgagttgcatgagaaacaagtcatctctcaaaccctaacaacctaatgctaaaatctagca 53976961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 321 - 403
Target Start/End: Complemental strand, 31359159 - 31359078
Alignment:
Q  321 aaaccaacatcctcccttaattctggtttccattttcaccataccagtcaagctgcttagcttgatgaacctgtcaaccttca 403  Q
    |||| ||||||||||||||||||  ||||||| || |  ||| ||| ||||||| || |||||||||||||||||||||||||    
T  31359159 aaactaacatcctcccttaattcaagtttccacttccttcattccaatcaagct-ctgagcttgatgaacctgtcaaccttca 31359078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 321 - 403
Target Start/End: Complemental strand, 44151566 - 44151484
Alignment:
Q  321 aaaccaacatcctcccttaattctggtttccattttcaccataccagtcaagctgcttagcttgatgaacctgtcaaccttca 403  Q
    |||| ||||||||||||||||||  ||||||| || |  ||| ||| ||||||| || ||||||||||| |||||||||||||    
T  44151566 aaactaacatcctcccttaattcaagtttccacttccttcattccaatcaagcttctgagcttgatgaatctgtcaaccttca 44151484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 321 - 403
Target Start/End: Original strand, 50628079 - 50628161
Alignment:
Q  321 aaaccaacatcctcccttaattctggtttccattttcaccataccagtcaagctgcttagcttgatgaacctgtcaaccttca 403  Q
    |||| ||||||||||||||||||  ||||||| |  |  ||| ||| ||||||| || |||||||||||||||||||||||||    
T  50628079 aaactaacatcctcccttaattcaagtttccactgccttcattccaatcaagcttctgagcttgatgaacctgtcaaccttca 50628161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 137 - 213
Target Start/End: Complemental strand, 29258570 - 29258494
Alignment:
Q  137 ttatatacatggttttgttaagtagcttgagaaacaagtcatctctcaacacctaactaccttatgctaaaatctag 213  Q
    ||||||||||| ||||| ||||| |||||| | |||||| |||| ||||  |||||| ||||||||||  |||||||    
T  29258570 ttatatacatgtttttgctaagttgcttgaaagacaagtaatctatcaaaccctaacaaccttatgcttgaatctag 29258494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 321 - 403
Target Start/End: Complemental strand, 26316021 - 26315939
Alignment:
Q  321 aaaccaacatcctcccttaattctggtttccattttcaccataccagtcaagctgcttagcttgatgaacctgtcaaccttca 403  Q
    |||| ||||||||||||||||||  ||||||| || |  ||| ||| ||||||| || ||||||||||| |||||||||||||    
T  26316021 aaactaacatcctcccttaattcaagtttccacttccttcattccaatcaagcttctgagcttgatgaatctgtcaaccttca 26315939  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 321 - 403
Target Start/End: Original strand, 43591970 - 43592052
Alignment:
Q  321 aaaccaacatcctcccttaattctggtttccattttcaccataccagtcaagctgcttagcttgatgaacctgtcaaccttca 403  Q
    |||| ||||||||||||||||||  ||||| | || |  ||| ||| |||||||  | |||||||||||||||||||||||||    
T  43591970 aaactaacatcctcccttaattcaagtttctacttccttcattccaatcaagcttttgagcttgatgaacctgtcaaccttca 43592052  T

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Target: scaffold0044 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 321 - 403
Target Start/End: Original strand, 45014 - 45096
Alignment:
Q  321 aaaccaacatcctcccttaattctggtttccattttcaccataccagtcaagctgcttagcttgatgaacctgtcaaccttca 403  Q
    |||| ||||||||||||||||||  ||||||| || |  ||| ||| |||| || || ||||||||||| |||||||||||||    
T  45014 aaactaacatcctcccttaattcaagtttccacttccttcattccaatcaaacttctgagcttgatgaatctgtcaaccttca 45096  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 321 - 403
Target Start/End: Original strand, 54167493 - 54167575
Alignment:
Q  321 aaaccaacatcctcccttaattctggtttccattttcaccataccagtcaagctgcttagcttgatgaacctgtcaaccttca 403  Q
    |||| ||||||||||||||||||  ||||||| || |  ||| ||| |||| || || ||||||||||| |||||||||||||    
T  54167493 aaactaacatcctcccttaattcaagtttccacttccttcattccaatcaaacttctgagcttgatgaatctgtcaaccttca 54167575  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 140 - 213
Target Start/End: Original strand, 446877 - 446950
Alignment:
Q  140 tatacatggttttgttaagtagcttgagaaacaagtcatctctcaacacctaactaccttatgctaaaatctag 213  Q
    |||| ||||||||||||||| |||||| | |||||| |||| ||||  |||||| ||||||||||  |||||||    
T  446877 tatatatggttttgttaagttgcttgaaagacaagtaatctatcaaaccctaacaaccttatgcttgaatctag 446950  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 310 - 374
Target Start/End: Complemental strand, 1299087 - 1299022
Alignment:
Q  310 aacttgaatta-aaaccaacatcctcccttaattctggtttccattttcaccataccagtcaagct 374  Q
    ||||||||||| |||| ||||||||||||||||||  ||||||| ||  ||||||||| |||||||    
T  1299087 aacttgaattagaaactaacatcctcccttaattcaagtttccaattctaccataccaatcaagct 1299022  T

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Target: scaffold0440 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: scaffold0440
Description:

Target: scaffold0440; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 321 - 401
Target Start/End: Complemental strand, 2988 - 2908
Alignment:
Q  321 aaaccaacatcctcccttaattctggtttccattttcaccataccagtcaagctgcttagcttgatgaacctgtcaacctt 401  Q
    |||| ||||||||||||||||||  ||||||| || |  ||| ||| |||| || || ||||||||||| |||||||||||    
T  2988 aaactaacatcctcccttaattcaagtttccacttccttcattccaatcaaacttctgagcttgatgaatctgtcaacctt 2908  T

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Target: scaffold0440; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 321 - 401
Target Start/End: Complemental strand, 7514 - 7434
Alignment:
Q  321 aaaccaacatcctcccttaattctggtttccattttcaccataccagtcaagctgcttagcttgatgaacctgtcaacctt 401  Q
    |||| ||||||||||||||||||  ||||||| || |  ||| ||| |||| || || ||||||||||| |||||||||||    
T  7514 aaactaacatcctcccttaattcaagtttccacttccttcattccaatcaaacttctgagcttgatgaatctgtcaacctt 7434  T

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