View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12234_high_2 (Length: 442)
Name: NF12234_high_2
Description: NF12234
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12234_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 391; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 1 - 420
Target Start/End: Complemental strand, 36202348 - 36201923
Alignment:
| Q |
1 |
tgatgaaaatctgaagtcgaaacatgaacatagtttggactttggaaaacatcaccttggagagattagagattgacaagggcttggtacggtatagatg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36202348 |
tgatgaaaatctgaagtcgaaacatgaacatagtttggactttggaaaacatcaccttggagagattagagattgacaagggcttggtacggtatagatg |
36202249 |
T |
|
| Q |
101 |
aattaagactttgttttttctatcagttgcttgtgcttgtaattctaagatatgactgattcagataataataataataactgtcataatgtgatgtgtg |
200 |
Q |
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||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36202248 |
aattaagactttgttttttctattagttgcctgtgcttgtaattctaagatatgactgattcagataataataataataactgtcataatgtgatgtgtg |
36202149 |
T |
|
| Q |
201 |
gtaattgttctgtctaattttatcttgtttttaccatatgggcagctaagtgctatagcatattgtgttcaaagaccaagttccattttcctccatttat |
300 |
Q |
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| T |
36202148 |
gtaattgttctgtctaattttatcttgtttttaccatatgggcagctaagtgctatagcgtattgtgttcaaagaccaagttccattttcctccatttat |
36202049 |
T |
|
| Q |
301 |
gtgatctagtttggggctgtctgaagtagtgataatatactacggggtat------ctttgcggccaacaaacatggctcttaaataatttttgaagggt |
394 |
Q |
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| T |
36202048 |
gtgatctagtttggggctgtctgaagtagtgataatatactacggggtatattttactttgcggccaacaaacatggctcttaaataatttttgaagggt |
36201949 |
T |
|
| Q |
395 |
gaagaggtgggtgtacttaagcactc |
420 |
Q |
| |
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| T |
36201948 |
gaagaggtgggtgtacttaagcactc |
36201923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 41 - 419
Target Start/End: Complemental strand, 36214793 - 36214412
Alignment:
| Q |
41 |
tttggaaaacatcaccttggagagattagagattgacaagggcttggtacggtatagatgaattaagactttgttttttctatcagttgcttgtgcttgt |
140 |
Q |
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||||||||||| | |||| ||||||||||||||||||| |||| || ||||||||| ||||||||||||| || ||| |||||||| ||||||||| |
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| T |
36214793 |
tttggaaaacacaatgttggggagattagagattgacaagtgctttgt-tggtatagatcaattaagactttgcttattcggtcagttgcatgtgcttgt |
36214695 |
T |
|
| Q |
141 |
aattctaagatatgactgattcagataataataataataactgtcataatgtgatgtgtggtaattgttctgtctaattttatcttgtttttaccatatg |
240 |
Q |
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|||| ||||||||||| || || ||||||||||||||||| ||||| | | | || | || || ||||||||| |||| ||||| |||||| |
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| T |
36214694 |
aattttaagatatgaccagtttag------ataataataactgtcatgatgtgttttatagtgttccttgtgcctaattttagcttggttttagcatatg |
36214601 |
T |
|
| Q |
241 |
ggcagctaagt-----gctatagcatat--tgtgttcaaagaccaagttccattttcctccatttatgtgatctagtttggggctgtctgaagtagtgat |
333 |
Q |
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|| ||||| || |||||| | ||| || | |||||||| ||||||| |||||||||||||||||||| |||||||||| | ||||| ||| | |
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| T |
36214600 |
ggtagctaggtaggtggctataccgtattatgagctcaaagactgagttcca-tttcctccatttatgtgatcaagtttggggcattttgaaggagtagt |
36214502 |
T |
|
| Q |
334 |
aatatactacggggtat------ctttgcggccaacaaacatggctcttaaataatttttgaagggtgaagaggtgggtgtacttaagcact |
419 |
Q |
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| T |
36214501 |
attataccacggggtatatttgactttgtggccaacaa--atcgctcttaaataatttttgaagggtgaataggtggttgtacttcagcact |
36214412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 40 - 180
Target Start/End: Complemental strand, 36198939 - 36198800
Alignment:
| Q |
40 |
ctttggaaaacatcaccttggagagattagagattgacaagggcttggtacggtatagatgaattaagactttgttttttctatcagttgcttgtgcttg |
139 |
Q |
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|||||||||||| | ||||||||||||||||||| ||| |||| || |||||||||||||| | |||||| ||||| ||||||||||||||||| |
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| T |
36198939 |
ctttggaaaacacaatgttggagagattagagattggtaagtgcttttta-ggtatagatgaatttacactttgcttttttggtcagttgcttgtgcttg |
36198841 |
T |
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| Q |
140 |
taattctaagatatgactgattcagataataataataataa |
180 |
Q |
| |
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||||| ||||||||||| |||||| |||||||||||||| |
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| T |
36198840 |
taattttaagatatgaccagttcagagaataataataataa |
36198800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 165 - 307
Target Start/End: Complemental strand, 36198788 - 36198643
Alignment:
| Q |
165 |
ataataataataataactgtcataatgtgatgtgtggtaattgttctgtctaattttatcttgtttttaccatatgggcagctaagtg-ctatagcatat |
263 |
Q |
| |
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|||||||||||||||||||||| ||||| ||| | || | || |||| ||||||| |||| |||||||||||||| ||||| ||| || ||| ||| |
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| T |
36198788 |
ataataataataataactgtcaagatgtgttgtctagtgttccttttgtcaaattttaacttgcttttaccatatgggtagctaggtggctgtagtgtat |
36198689 |
T |
|
| Q |
264 |
tgtg--ttcaaagaccaagttccattttcctccatttatgtgatct |
307 |
Q |
| |
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| || ||||||||| ||||||||||||||||||||||||||||| |
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| T |
36198688 |
tatgagttcaaagactgagttccattttcctccatttatgtgatct |
36198643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 36209915 - 36209877
Alignment:
| Q |
1 |
tgatgaaaatctgaagtcgaaacatgaacatagtttgga |
39 |
Q |
| |
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|||||||||||||||||||||||||| |||| ||||||| |
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| T |
36209915 |
tgatgaaaatctgaagtcgaaacatgcacatcgtttgga |
36209877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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