View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12234_low_1 (Length: 681)

Name: NF12234_low_1
Description: NF12234
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12234_low_1
NF12234_low_1
[»] chr1 (10 HSPs)
chr1 (20-502)||(31770659-31771143)
chr1 (245-502)||(7607896-7608155)
chr1 (526-633)||(31771310-31771417)
chr1 (522-633)||(7608318-7608429)
chr1 (497-590)||(7608224-7608317)
chr1 (497-590)||(31771212-31771305)
chr1 (213-270)||(14184882-14184939)
chr1 (305-342)||(14184848-14184885)
chr1 (587-633)||(1721567-1721613)
chr1 (587-639)||(17726037-17726089)
[»] chr4 (3 HSPs)
chr4 (20-342)||(41810334-41810656)
chr4 (570-633)||(3649882-3649945)
chr4 (570-630)||(38467690-38467751)
[»] scaffold0003 (4 HSPs)
scaffold0003 (333-461)||(36664-36794)
scaffold0003 (342-461)||(42852-42976)
scaffold0003 (460-499)||(36837-36876)
scaffold0003 (548-633)||(36966-37051)
[»] chr3 (15 HSPs)
chr3 (213-319)||(52130955-52131061)
chr3 (337-432)||(31688156-31688252)
chr3 (333-432)||(31896611-31896711)
chr3 (333-432)||(31912320-31912420)
chr3 (333-432)||(31945968-31946068)
chr3 (243-311)||(52311470-52311539)
chr3 (245-302)||(53689436-53689493)
chr3 (548-633)||(31687881-31687966)
chr3 (570-631)||(19766027-19766088)
chr3 (459-499)||(31688056-31688096)
chr3 (459-499)||(31896771-31896811)
chr3 (459-499)||(31912480-31912520)
chr3 (361-400)||(952782-952821)
chr3 (428-461)||(52131084-52131117)
chr3 (459-499)||(31946128-31946168)
[»] chr6 (1 HSPs)
chr6 (342-461)||(27444385-27444509)
[»] chr7 (3 HSPs)
chr7 (220-311)||(37362394-37362487)
chr7 (249-305)||(1971305-1971361)
chr7 (251-302)||(7841462-7841512)
[»] chr5 (1 HSPs)
chr5 (26-87)||(16253096-16253157)
[»] scaffold0152 (1 HSPs)
scaffold0152 (548-629)||(10210-10291)
[»] chr8 (1 HSPs)
chr8 (240-294)||(19962262-19962318)


Alignment Details
Target: chr1 (Bit Score: 384; Significance: 0; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 20 - 502
Target Start/End: Original strand, 31770659 - 31771143
Alignment:
Q  20 tcaatggcaacgaaatcggaaaagttcaatgcgaagaagaaatggatggagcgaaccttgtatcgaaggtgctggtaagnnnnnnnnnnnnnnncaacat 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||               ||||||    
T  31770659 tcaatggcaacgaaatcggaaaagttcaatgcgaagaagaaatggatggagcgaaccttgtatcgaaggtgctggtaagaaaaaaccaaaaaaacaacat 31770758  T
Q  120 caggaagatatacagtacagaaataacagcaacnnnnnnntgggagactcatacccgtcaaagcatggtaggaaagcaatatatctacaatacttctcat 219  Q
    |||||||||||||||||||||||| ||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31770759 caggaagatatacagtacagaaattacagcaacaaaaaaatgggagactcatacccgtcaaagcatggtaggaaagcaatatatctacaatacttctcat 31770858  T
Q  220 ttgaagatgtataatcaaaagtgacagagggagaagaagagggaagcatggggcactgtagagtttgcatgggtattgaacaataatggagaggtgtgat 319  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31770859 ttgaagatgtataatcaaaagtgacagagggagaagaagagggaagcatggggcactgtagagtttgcatgggtattgaacaataatggagaggtgtgat 31770958  T
Q  320 aataacatcagttttccgacgcggtggtcaacgatgatgcatttactttagagggtcgaaatgaaggcagaagaagaagaaaggattt--tgtgtttttg 417  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||  ||||||||||    
T  31770959 aataacatcagttttccaacgcggtggtcaacgatgatgcatttactttagaaggtcgaaatgaaggcagaagaagaagaaatgattttgtgtgtttttg 31771058  T
Q  418 aagaaaatgaggaatcgtagagagatggagagaaaggagggttattggaaaccaataacattaattatttgtcatttacaataca 502  Q
    ||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31771059 aagaagatgaggaatcgtagagagatgaagagaaaggagggttattggaaaccaataacattaattatttgtcatttacaataca 31771143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 245 - 502
Target Start/End: Original strand, 7607896 - 7608155
Alignment:
Q  245 agagggagaagaagagggaagcatggggcactgtagagtttgcatgggtattgaacaataatggagaggtgtgataataacatcagttttccgacgcggt 344  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||    
T  7607896 agagggagaagaagagggaagcatggggcactgtagagtttgcatgggtattgaacaataatggagaggtgtgataataacagcagttttccgacacggt 7607995  T
Q  345 ggtcaacgatgatgcatttactttagagggtcgaaatgaaggcagaagaagaagaaaggattt--tgtgtttttgaagaaaatgaggaatcgtagagaga 442  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||  ||||||||||||||| |||||||||||||||||||    
T  7607996 ggtcaacgatgatgcatttactttagagggtcgaaatgaaggcaaaagaagaagaaaggattttgtgtgtttttgaagaagatgaggaatcgtagagaga 7608095  T
Q  443 tggagagaaaggagggttattggaaaccaataacattaattatttgtcatttacaataca 502  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7608096 tggagagaaaggagggttattggaaaccaataacattaattatttgtcatttacaataca 7608155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 526 - 633
Target Start/End: Original strand, 31771310 - 31771417
Alignment:
Q  526 gaggaaaaaatggcaaacagattagatccaagggctgaggtttgttggcacctaaaataggagaattagggttgggagtgttatttggagtgttaactag 625  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  31771310 gaggaaaaaattgcaaacagattagatccaagggctgaggtttgttggcgcctaaaacaggagaattagggttgggagtgttatttggagtgttaactag 31771409  T
Q  626 gattagga 633  Q
    ||||||||    
T  31771410 gattagga 31771417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 522 - 633
Target Start/End: Original strand, 7608318 - 7608429
Alignment:
Q  522 aaaggaggaaaaaatggcaaacagattagatccaagggctgaggtttgttggcacctaaaataggagaattagggttgggagtgttatttggagtgttaa 621  Q
    ||||||||||||||| ||||||||||||||||||||||||||| ||||||||| ||||||| ||||||||||||||||||||||||||||||||| ||||    
T  7608318 aaaggaggaaaaaattgcaaacagattagatccaagggctgagatttgttggcgcctaaaacaggagaattagggttgggagtgttatttggagttttaa 7608417  T
Q  622 ctaggattagga 633  Q
    ||||||||||||    
T  7608418 ctaggattagga 7608429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 497 - 590
Target Start/End: Original strand, 7608224 - 7608317
Alignment:
Q  497 aatacaattaattttgtcacgtaagaaaggaggaaaaaatggcaaacagattagatccaagggctgaggtttgttggcacctaaaataggagaa 590  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||    
T  7608224 aatacaattaattttgtcacgtaagaaaggaggaaaaaatggcaaacagattagatccaagggctgaggtttgttggcgcctaaaacaggagaa 7608317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 497 - 590
Target Start/End: Original strand, 31771212 - 31771305
Alignment:
Q  497 aatacaattaattttgtcacgtaagaaaggaggaaaaaatggcaaacagattagatccaagggctgaggtttgttggcacctaaaataggagaa 590  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| |||||||    
T  31771212 aatacaattaattttgtcacgtaagaaaggaggaaaaactggcaaacagattagatccaagggctgaggtttgttggcgcctaaaacaggagaa 31771305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 213 - 270
Target Start/End: Complemental strand, 14184939 - 14184882
Alignment:
Q  213 ttctcatttgaagatgtataatcaaaagtgacagagggagaagaagagggaagcatgg 270  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14184939 ttctaatttgaagatgtataatcaaaagtgacagagggagaagaagagggaagcatgg 14184882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 305 - 342
Target Start/End: Complemental strand, 14184885 - 14184848
Alignment:
Q  305 atggagaggtgtgataataacatcagttttccgacgcg 342  Q
    |||||||||||||||||||||||||||||||| |||||    
T  14184885 atggagaggtgtgataataacatcagttttcctacgcg 14184848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 587 - 633
Target Start/End: Complemental strand, 1721613 - 1721567
Alignment:
Q  587 agaattagggttgggagtgttatttggagtgttaactaggattagga 633  Q
    |||||||||||||| || |||| |||||||||||| |||||||||||    
T  1721613 agaattagggttggcagcgttaattggagtgttaattaggattagga 1721567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 587 - 639
Target Start/End: Complemental strand, 17726089 - 17726037
Alignment:
Q  587 agaattagggttgggagtgttatttggagtgttaactaggattaggattaatt 639  Q
    ||||||||||||   |||| || |||||||||||||||||||||||| |||||    
T  17726089 agaattagggttttaagtgataattggagtgttaactaggattaggaataatt 17726037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 249; Significance: 1e-138; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 20 - 342
Target Start/End: Complemental strand, 41810656 - 41810334
Alignment:
Q  20 tcaatggcaacgaaatcggaaaagttcaatgcgaagaagaaatggatggagcgaaccttgtatcgaaggtgctggtaagnnnnnnnnnnnnnnncaacat 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||               ||||||    
T  41810656 tcaatggcaacgaaatcggaaaagttcaatgcgaagaagaaatggatggagcgaaccttgtatcgaaggtgctggtaagaaaaaaccaaaaaaacaacat 41810557  T
Q  120 caggaagatatacagtacagaaataacagcaacnnnnnnntgggagactcatacccgtcaaagcatggtaggaaagcaatatatctacaatacttctcat 219  Q
    |||||||||||||||||||||||| ||||||||       ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  41810556 caggaagatatacagtacagaaattacagcaacaaaaaaatgggagactcatacccgtcaaagcatggtagtaaagcaatatatctacaatacttctcat 41810457  T
Q  220 ttgaagatgtataatcaaaagtgacagagggagaagaagagggaagcatggggcactgtagagtttgcatgggtattgaacaataatggagaggtgtgat 319  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41810456 ttgaagatgtataatcaaaagtgacagagggagaagaagagggaagcatggggcactgtagagtttgcatgggtattgaacaataatggagaggtgtgat 41810357  T
Q  320 aataacatcagttttccgacgcg 342  Q
    |||||||||||||||||||||||    
T  41810356 aataacatcagttttccgacgcg 41810334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 570 - 633
Target Start/End: Complemental strand, 3649945 - 3649882
Alignment:
Q  570 ttggcacctaaaataggagaattagggttgggagtgttatttggagtgttaactaggattagga 633  Q
    ||||| ||||||| || ||| ||||||||   ||||||| ||||||||||||||||||||||||    
T  3649945 ttggcgcctaaaaaagtagatttagggttttaagtgttaattggagtgttaactaggattagga 3649882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 570 - 630
Target Start/End: Original strand, 38467690 - 38467751
Alignment:
Q  570 ttggcacctaaaatagg-agaattagggttgggagtgttatttggagtgttaactaggatta 630  Q
    ||||| ||||||||| | ||||||||||||   ||||||| |||||||||||||||||||||    
T  38467690 ttggcgcctaaaataagtagaattagggttttaagtgttaattggagtgttaactaggatta 38467751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 100; Significance: 4e-49; HSPs: 4)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 333 - 461
Target Start/End: Original strand, 36664 - 36794
Alignment:
Q  333 ttccgacgcggtggtcaacgatgatgcatttactttagagggtcgaaatgaaggcagaagaagaagaaaggattt--tgtgtttttgaagaaaatgagga 430  Q
    |||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||  ||||||||||||||| |||||||    
T  36664 ttccaacgcggtgatcaacgatgatgcatttactttagagggtcgaaatgaaggcagaagaagaaaaagggattttgtgtgtttttgaagaagatgagga 36763  T
Q  431 atcgtagagagatggagagaaaggagggtta 461  Q
    |||||||||||||||||||||||||||||||    
T  36764 atcgtagagagatggagagaaaggagggtta 36794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 342 - 461
Target Start/End: Original strand, 42852 - 42976
Alignment:
Q  342 ggtggtcaacgatgatgcatttactttagagggtcgaaatgaaggc---agaagaagaagaaaggattt--tgtgtttttgaagaaaatgaggaatcgta 436  Q
    ||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||| ||||||  ||||||||||||||| | |||||||||||    
T  42852 ggtggtcaacgatgatgcatttactttagagggtcgaaatgaaggcagaagaagaagaagaagggattttgtgtgtttttgaagaagacgaggaatcgta 42951  T
Q  437 gagagatggagagaaaggagggtta 461  Q
    |||||||||||||||||||||||||    
T  42952 gagagatggagagaaaggagggtta 42976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 460 - 499
Target Start/End: Original strand, 36837 - 36876
Alignment:
Q  460 tattggaaaccaataacattaattatttgtcatttacaat 499  Q
    ||||||||||| ||||||||||||||||||||||||||||    
T  36837 tattggaaaccgataacattaattatttgtcatttacaat 36876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 548 - 633
Target Start/End: Original strand, 36966 - 37051
Alignment:
Q  548 tagatccaagggctgaggtttgtt-ggcacctaaaataggagaattagggttgggagtgttatttggagtgttaactaggattagga 633  Q
    |||||||||||||| ||| ||||| ||| ||||||| || ||||||||| || | ||||||| |||||||||||| |||||||||||    
T  36966 tagatccaagggct-aggattgtttggcgcctaaaaaagaagaattaggatttgaagtgttaattggagtgttaattaggattagga 37051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 99; Significance: 2e-48; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 213 - 319
Target Start/End: Complemental strand, 52131061 - 52130955
Alignment:
Q  213 ttctcatttgaagatgtataatcaaaagtgacagagggagaagaagagggaagcatggggcactgtagagtttgcatgggtattgaacaataatggagag 312  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  52131061 ttctcatttgatgatgtataatcaaaagtgacagagggagaagaagagggaagcatggggcactgtagagtttgcatcggtattgaacaataatggagag 52130962  T
Q  313 gtgtgat 319  Q
    |||||||    
T  52130961 gtgtgat 52130955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 337 - 432
Target Start/End: Complemental strand, 31688252 - 31688156
Alignment:
Q  337 gacgcggtggtcaacgatgatgcatttactttagagggtcgaaatgaaggcagaagaagaagaaaggattt--tgtgtttttgaagaaaatgaggaat 432  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||  ||||||||||||||| |||||||||    
T  31688252 gacgcggtggtcaacgatgatgcatttactttagagggtcgaaatgaaggcagaagaagaa-aagggattttgtgtgtttttgaagaagatgaggaat 31688156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 333 - 432
Target Start/End: Original strand, 31896611 - 31896711
Alignment:
Q  333 ttccgacgcggtggtcaacgatgatgcatttactttagagggtcgaaatgaaggcagaagaagaagaaaggattt--tgtgtttttgaagaaaatgagga 430  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || ||||||  ||||||||||||||| |||||||    
T  31896611 ttccgacgcggtggtcaacgatgatgcatttactttagagggtcgaaatgaaggcaaaagaagaa-aagggattttgtgtgtttttgaagaagatgagga 31896709  T
Q  431 at 432  Q
    ||    
T  31896710 at 31896711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 333 - 432
Target Start/End: Original strand, 31912320 - 31912420
Alignment:
Q  333 ttccgacgcggtggtcaacgatgatgcatttactttagagggtcgaaatgaaggcagaagaagaagaaaggattt--tgtgtttttgaagaaaatgagga 430  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || ||||||  ||||||||||||||| |||||||    
T  31912320 ttccgacgcggtggtcaacgatgatgcatttactttagagggtcgaaatgaaggcaaaagaagaa-aagggattttgtgtgtttttgaagaagatgagga 31912418  T
Q  431 at 432  Q
    ||    
T  31912419 at 31912420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 333 - 432
Target Start/End: Original strand, 31945968 - 31946068
Alignment:
Q  333 ttccgacgcggtggtcaacgatgatgcatttactttagagggtcgaaatgaaggcagaagaagaagaaaggattt--tgtgtttttgaagaaaatgagga 430  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || ||||||  ||||||||||||||| |||||||    
T  31945968 ttccgacgcggtggtcaacgatgatgcatttactttagagggtcgaaatgaaggcaaaagaagaa-aagggattttgtgtgtttttgaagaagatgagga 31946066  T
Q  431 at 432  Q
    ||    
T  31946067 at 31946068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 243 - 311
Target Start/End: Original strand, 52311470 - 52311539
Alignment:
Q  243 acagagggagaagaagagggaagcatggggcactgtagagtttgcatgggtattgaac-aataatggaga 311  Q
    |||||||||||||||||||| | |||||||| ||||||||||||||| |||||||||| |||||||||||    
T  52311470 acagagggagaagaagagggcaacatggggctctgtagagtttgcatcggtattgaacaaataatggaga 52311539  T

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Target: chr3; HSP #7
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 245 - 302
Target Start/End: Complemental strand, 53689493 - 53689436
Alignment:
Q  245 agagggagaagaagagggaagcatggggcactgtagagtttgcatgggtattgaacaa 302  Q
    ||||| ||||||||||||||||||||||| ||||||||||||||| ||||||||||||    
T  53689493 agaggaagaagaagagggaagcatggggctctgtagagtttgcatcggtattgaacaa 53689436  T

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Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 548 - 633
Target Start/End: Complemental strand, 31687966 - 31687881
Alignment:
Q  548 tagatccaagggctgaggtttgtt-ggcacctaaaataggagaattagggttgggagtgttatttggagtgttaactaggattagga 633  Q
    |||||||||||||| ||| ||||| ||| ||||||| || |||||||||||| ||||||| | |||||||||||||||||| |||||    
T  31687966 tagatccaagggct-aggattgtttggcgcctaaaaaagtagaattagggtttggagtgtaagttggagtgttaactaggactagga 31687881  T

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Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 570 - 631
Target Start/End: Complemental strand, 19766088 - 19766027
Alignment:
Q  570 ttggcacctaaaataggagaattagggttgggagtgttatttggagtgttaactaggattag 631  Q
    ||||| ||||||| || || ||||||||| ||||||||| ||||||||||||||||||||||    
T  19766088 ttggcgcctaaaaaagtaggattagggtttggagtgttaattggagtgttaactaggattag 19766027  T

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Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 459 - 499
Target Start/End: Complemental strand, 31688096 - 31688056
Alignment:
Q  459 ttattggaaaccaataacattaattatttgtcatttacaat 499  Q
    |||||||||||| ||||||||||||||||||||||||||||    
T  31688096 ttattggaaaccgataacattaattatttgtcatttacaat 31688056  T

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Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 459 - 499
Target Start/End: Original strand, 31896771 - 31896811
Alignment:
Q  459 ttattggaaaccaataacattaattatttgtcatttacaat 499  Q
    |||||||||| | ||||||||||||||||||||||||||||    
T  31896771 ttattggaaatcgataacattaattatttgtcatttacaat 31896811  T

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Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 459 - 499
Target Start/End: Original strand, 31912480 - 31912520
Alignment:
Q  459 ttattggaaaccaataacattaattatttgtcatttacaat 499  Q
    |||||||||| | ||||||||||||||||||||||||||||    
T  31912480 ttattggaaatcgataacattaattatttgtcatttacaat 31912520  T

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Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 361 - 400
Target Start/End: Original strand, 952782 - 952821
Alignment:
Q  361 tttactttagagggtcgaaatgaaggcagaagaagaagaa 400  Q
    ||||||||||||| | ||||||||||||||||||||||||    
T  952782 tttactttagaggattgaaatgaaggcagaagaagaagaa 952821  T

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Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 428 - 461
Target Start/End: Complemental strand, 52131117 - 52131084
Alignment:
Q  428 ggaatcgtagagagatggagagaaaggagggtta 461  Q
    ||||||||||||||||||||||| ||||||||||    
T  52131117 ggaatcgtagagagatggagagagaggagggtta 52131084  T

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Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 459 - 499
Target Start/End: Original strand, 31946128 - 31946168
Alignment:
Q  459 ttattggaaaccaataacattaattatttgtcatttacaat 499  Q
    |||||||||| | |||||||| |||||||||||||||||||    
T  31946128 ttattggaaatcgataacattcattatttgtcatttacaat 31946168  T

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Target: chr6 (Bit Score: 88; Significance: 6e-42; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 342 - 461
Target Start/End: Complemental strand, 27444509 - 27444385
Alignment:
Q  342 ggtggtcaacgatgatgcatttactttagagggtcgaaatgaaggcagaagaaga---agaaaggattt--tgtgtttttgaagaaaatgaggaatcgta 436  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||| ||||||  ||||||||||||||| | |||||||||||    
T  27444509 ggtggtcaacgatgatgcatttactttagagggtcgaaatgaaggcagaagaagaagaagaagggattttgtgtgtttttgaagaagacgaggaatcgta 27444410  T
Q  437 gagagatggagagaaaggagggtta 461  Q
    |||||||||||||||||||||||||    
T  27444409 gagagatggagagaaaggagggtta 27444385  T

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Target: chr7 (Bit Score: 62; Significance: 2e-26; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 220 - 311
Target Start/End: Original strand, 37362394 - 37362487
Alignment:
Q  220 ttgaagatgtataatcaaaa-gtgacagagggagaagaagagggaagcatggggcactgtagagtttgcatgggtattgaac-aataatggaga 311  Q
    |||||||||| ||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||  ||||||||| |||||||||||    
T  37362394 ttgaagatgtttaatcaaaatgtgacagagggagaagaagagggaagcatggggctctgtagagtttgcatcagtattgaacaaataatggaga 37362487  T

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Target: chr7; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 249 - 305
Target Start/End: Complemental strand, 1971361 - 1971305
Alignment:
Q  249 ggagaagaagagggaagcatggggcactgtagagtttgcatgggtattgaacaataa 305  Q
    ||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||    
T  1971361 ggagaagaagagggaagcatggggctctgtagagtttgcattggtattgaacaataa 1971305  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 251 - 302
Target Start/End: Complemental strand, 7841512 - 7841462
Alignment:
Q  251 agaagaagagggaagcatggggcactgtagagtttgcatgggtattgaacaa 302  Q
    ||||||||||||||||||||||  ||||||||||||||| ||||||||||||    
T  7841512 agaagaagagggaagcatggggttctgtagagtttgcat-ggtattgaacaa 7841462  T

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Target: chr5 (Bit Score: 46; Significance: 7e-17; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 26 - 87
Target Start/End: Original strand, 16253096 - 16253157
Alignment:
Q  26 gcaacgaaatcggaaaagttcaatgcgaagaagaaatggatggagcgaaccttgtatcgaag 87  Q
    ||||||||||||||||||| |||||||  ||||||||||||||||||||||||| |||||||    
T  16253096 gcaacgaaatcggaaaagtgcaatgcggtgaagaaatggatggagcgaaccttgaatcgaag 16253157  T

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Target: scaffold0152 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: scaffold0152
Description:

Target: scaffold0152; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 548 - 629
Target Start/End: Complemental strand, 10291 - 10210
Alignment:
Q  548 tagatccaagggctgaggtttgtt-ggcacctaaaataggagaattagggttgggagtgttatttggagtgttaactaggatt 629  Q
    |||||||||||||| ||| ||||| ||| ||||||| || |||||||||||| ||||||||| ||||||||||||||||||||    
T  10291 tagatccaagggct-aggattgtttggcgcctaaaaaagtagaattagggtttggagtgttaattggagtgttaactaggatt 10210  T

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Target: chr8 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 240 - 294
Target Start/End: Complemental strand, 19962318 - 19962262
Alignment:
Q  240 gtgacagagggagaagaagagggaagc--atggggcactgtagagtttgcatgggta 294  Q
    ||||| |||||||||||||||||||||  ||||||| ||||||||||||||| ||||    
T  19962318 gtgacggagggagaagaagagggaagcatatggggctctgtagagtttgcatcggta 19962262  T

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