View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12234_low_2 (Length: 604)

Name: NF12234_low_2
Description: NF12234
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12234_low_2
NF12234_low_2
[»] chr3 (3 HSPs)
chr3 (35-591)||(26452896-26453464)
chr3 (10-92)||(26452805-26452887)
chr3 (14-87)||(32609383-32609456)
[»] chr4 (13 HSPs)
chr4 (115-258)||(23676325-23676469)
chr4 (11-113)||(21538912-21539014)
chr4 (14-113)||(4873037-4873136)
chr4 (30-97)||(5979786-5979853)
chr4 (21-97)||(3703584-3703660)
chr4 (14-97)||(25812263-25812339)
chr4 (56-98)||(12329026-12329068)
chr4 (57-103)||(21538844-21538890)
chr4 (71-108)||(2605367-2605404)
chr4 (33-78)||(48292387-48292432)
chr4 (57-98)||(53860895-53860936)
chr4 (17-45)||(24680790-24680818)
chr4 (6-54)||(32430543-32430591)
[»] scaffold0110 (2 HSPs)
scaffold0110 (14-113)||(11425-11524)
scaffold0110 (14-113)||(19162-19261)
[»] chr8 (5 HSPs)
chr8 (14-113)||(25939281-25939380)
chr8 (6-45)||(34676985-34677024)
chr8 (56-104)||(9040955-9041003)
chr8 (6-46)||(28798979-28799019)
chr8 (13-113)||(33432049-33432151)
[»] chr5 (18 HSPs)
chr5 (6-113)||(14613533-14613640)
chr5 (13-97)||(6706273-6706357)
chr5 (56-108)||(10818875-10818927)
chr5 (54-113)||(10818787-10818845)
chr5 (14-113)||(35924645-35924743)
chr5 (49-94)||(4639521-4639566)
chr5 (9-45)||(14123047-14123083)
chr5 (6-69)||(5506879-5506942)
chr5 (30-113)||(28976687-28976770)
chr5 (11-45)||(30511846-30511880)
chr5 (11-45)||(30552186-30552220)
chr5 (57-110)||(4192001-4192054)
chr5 (14-51)||(30513855-30513892)
chr5 (14-51)||(30554195-30554232)
chr5 (56-108)||(8367019-8367071)
chr5 (352-380)||(11727230-11727258)
chr5 (9-45)||(12075931-12075967)
chr5 (57-97)||(35924595-35924635)
[»] chr1 (10 HSPs)
chr1 (361-418)||(47680531-47680588)
chr1 (6-113)||(30018564-30018670)
chr1 (14-114)||(49632894-49632995)
chr1 (57-91)||(11985458-11985492)
chr1 (10-113)||(39065299-39065401)
chr1 (448-530)||(47680406-47680488)
chr1 (56-108)||(30018687-30018740)
chr1 (14-97)||(8258910-8258991)
chr1 (33-113)||(36724171-36724251)
chr1 (9-45)||(42486436-42486472)
[»] chr7 (7 HSPs)
chr7 (12-92)||(27866672-27866752)
chr7 (14-97)||(48073016-48073099)
chr7 (1-45)||(5617900-5617944)
chr7 (13-45)||(21311760-21311792)
chr7 (64-108)||(36390712-36390756)
chr7 (35-87)||(27747373-27747425)
chr7 (60-92)||(39933632-39933664)
[»] chr6 (11 HSPs)
chr6 (14-91)||(30351451-30351528)
chr6 (19-113)||(3806174-3806267)
chr6 (57-104)||(13613749-13613796)
chr6 (30-97)||(16396652-16396719)
chr6 (14-53)||(26221247-26221286)
chr6 (14-78)||(18142429-18142493)
chr6 (14-60)||(12120174-12120220)
chr6 (12-54)||(16185328-16185370)
chr6 (6-46)||(13613814-13613854)
chr6 (14-78)||(22997001-22997065)
chr6 (14-78)||(23791336-23791400)
[»] chr2 (6 HSPs)
chr2 (14-110)||(37629609-37629704)
chr2 (26-108)||(13793669-13793751)
chr2 (56-104)||(37096596-37096644)
chr2 (22-92)||(39994519-39994590)
chr2 (6-46)||(4984009-4984049)
chr2 (14-54)||(13798841-13798881)
[»] scaffold0197 (1 HSPs)
scaffold0197 (13-45)||(26024-26056)


Alignment Details
Target: chr3 (Bit Score: 435; Significance: 0; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 35 - 591
Target Start/End: Original strand, 26452896 - 26453464
Alignment:
Q  35 gtagttaactattgctggggtgtttttggtcattttcatgtgtttctagaaaacaatgaatgtccaaaaagcaattctcgctttatttttgtcctactgg 134  Q
    |||||||||||||||||| || ||||||||||||||||||||||||||| ||| |||| ||||||||||| |||||||||||||||||||||||||||||    
T  26452896 gtagttaactattgctggagtatttttggtcattttcatgtgtttctaggaaataatggatgtccaaaaaacaattctcgctttatttttgtcctactgg 26452995  T
Q  135 gctttgtgtgctgttgtctcccatcactgacttaagggtaaatgctcacggaccctgtgaattgttaaaatttcacatggggtgagaaaaacaagcattg 234  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  26452996 gctttgtgtgctgttgtctcccatcactgacttaagggtaaatgctcacggaccccgtgaattgttaaaatttcacatggggtgagaaaaacaagcattg 26453095  T
Q  235 aatcctataatatggtccaactttaaagnnnnnnnnttgtttagcagaagttacgatctgataggctgagcaatggaaaggggtgtgccgatcaatctta 334  Q
    ||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||     
T  26453096 aatcctataatatggtccaactttaaagaaaaaaaattgtttagcagaagttacgatctgataggctgaacaatggaaaggggtgtgccgatcaatcttg 26453195  T
Q  335 gagcttctaaagcactggaacaaattttttgttcttagctgctaaattgtgggtccaagtatgccatgtaggatttaacaaccactgaannnnnnnctcc 434  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||    
T  26453196 gagcttctaaagcactggaacaaatattttgttcttagctgctaaattgtgggtccaagtatgccatgtaggatttaacaaccactgaatttttttctcc 26453295  T
Q  435 aatgctagaactc------------attttactttatgtaggctcctcatatttcttctctcattttccaatatacctcttctctcactgcttttcttac 522  Q
    |||||||||||||            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  26453296 aatgctagaactcaacacacttcctattttactttatgtaggctcctcatatttcttctctcattttccaatatacctcttctctctctgcttttcttac 26453395  T
Q  523 cttttctgtactttttctaatgcagtcagtgctagaacatgttctagtgggagaatttttctccacagg 591  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  26453396 cttttctgtactttttctaatgcagtcagtgctagaacatgttctagtgggagaattgttctccacagg 26453464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 10 - 92
Target Start/End: Complemental strand, 26452887 - 26452805
Alignment:
Q  10 ccgattttctagttataagccagcggtagttaactattgctggggtgtttttggtcattttcatgtgtttctagaaaacaatg 92  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26452887 ccgattttctagttataagccagcggtagttaactattgctggggtgtttttggtcattttcatgtgtttctagaaaacaatg 26452805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 14 - 87
Target Start/End: Complemental strand, 32609456 - 32609383
Alignment:
Q  14 ttttctagttataagccagcggtagttaactattgctggggtgtttttggtcattttcatgtgtttctagaaaa 87  Q
    ||||||||||||||| |||||||| |||| |||  |||  ||||||||| | |||| |||||||||||||||||    
T  32609456 ttttctagttataagtcagcggtaattaattatcactgaagtgtttttgattatttccatgtgtttctagaaaa 32609383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 89; Significance: 1e-42; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 115 - 258
Target Start/End: Complemental strand, 23676469 - 23676325
Alignment:
Q  115 ctttatttttgtcctactgggctttgtgtgctgttgtctcccatcactgacttaagggtaaatgctcacggaccctgtgaattg-ttaaaatttcacatg 213  Q
    ||||||||||||||||||||| ||| ||||||| ||||||||||||||||||| | |||||||||||||||||||  ||||||| |||||||||||||||    
T  23676469 ctttatttttgtcctactgggatttctgtgctggtgtctcccatcactgacttgacggtaaatgctcacggaccccttgaattgcttaaaatttcacatg 23676370  T
Q  214 gggtgagaaaaacaagcattgaatcctataatatggtccaacttt 258  Q
    | |||||||||||||||||||||||||| ||| | ||||| ||||    
T  23676369 gagtgagaaaaacaagcattgaatcctagaatttagtccaccttt 23676325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 11 - 113
Target Start/End: Original strand, 21538912 - 21539014
Alignment:
Q  11 cgattttctagttataagccagcggtagttaactattgctggggtgtttttggtcattttcatgtgtttctagaaaacaatgaatgtccaaaaagcaatt 110  Q
    |||||||||| |||||||||||||||| |||||||    |||||||||||||||||||| | ||||||||||| ||||| |||| ||  |||||||||||    
T  21538912 cgattttctaattataagccagcggtaattaactaccattggggtgtttttggtcatttccttgtgtttctaggaaacattgaaagtttaaaaagcaatt 21539011  T
Q  111 ctc 113  Q
    |||    
T  21539012 ctc 21539014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 14 - 113
Target Start/End: Complemental strand, 4873136 - 4873037
Alignment:
Q  14 ttttctagttataagccagcggtagttaactattgctggggtgtttttggtcattttcatgtgtttctagaaaacaatgaatgtccaaaaagcaattctc 113  Q
    ||||||||||||||| ||||||||||||||||  ||||  ||||||||| |||||| ||||||||| ||||||| |||| | ||| |||||| |||||||    
T  4873136 ttttctagttataagtcagcggtagttaactaccgctgaagtgtttttgatcatttccatgtgtttttagaaaataatggaagtcaaaaaagaaattctc 4873037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 30 - 97
Target Start/End: Original strand, 5979786 - 5979853
Alignment:
Q  30 cagcggtagttaactattgctggggtgtttttggtcattttcatgtgtttctagaaaacaatgaatgt 97  Q
    ||||||||||||||||  | |||||||||||||||||||| ||| ||||||||  |||||||||||||    
T  5979786 cagcggtagttaactaccgttggggtgtttttggtcatttccatttgtttctaagaaacaatgaatgt 5979853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 21 - 97
Target Start/End: Complemental strand, 3703660 - 3703584
Alignment:
Q  21 gttataagccagcggtagttaactattgctggggtgtttttggtcattttcatgtgtttctagaaaacaatgaatgt 97  Q
    |||||||| || |||||||||||||  ||||  |  |||||||||||||||||||||||||| ||||||||| ||||    
T  3703660 gttataagtcaacggtagttaactaccgctgatgattttttggtcattttcatgtgtttctaaaaaacaatggatgt 3703584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 14 - 97
Target Start/End: Complemental strand, 25812339 - 25812263
Alignment:
Q  14 ttttctagttataagccagcggtagttaactattgctggggtgtttttggtcattttcatgtgtttctagaaaacaatgaatgt 97  Q
    |||||||||||||| |||||||||||||||||         |||||||| |||||| |||||||||||||||||||||| ||||    
T  25812339 ttttctagttataaaccagcggtagttaactaca-------tgtttttgatcatttccatgtgtttctagaaaacaatggatgt 25812263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 56 - 98
Target Start/End: Original strand, 12329026 - 12329068
Alignment:
Q  56 gtttttggtcattttcatgtgtttctagaaaacaatgaatgtc 98  Q
    ||||||| ||||||||||||||||||| ||||||||| |||||    
T  12329026 gtttttgatcattttcatgtgtttctaaaaaacaatggatgtc 12329068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 57 - 103
Target Start/End: Complemental strand, 21538890 - 21538844
Alignment:
Q  57 tttttggtcattttcatgtgtttctagaaaacaatgaatgtccaaaa 103  Q
    |||||||| |||| |||||||||||||||||||||| ||||| ||||    
T  21538890 tttttggttatttccatgtgtttctagaaaacaatggatgtcaaaaa 21538844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 71 - 108
Target Start/End: Complemental strand, 2605404 - 2605367
Alignment:
Q  71 catgtgtttctagaaaacaatgaatgtccaaaaagcaa 108  Q
    ||||||||||||| |||||||||||||| |||||||||    
T  2605404 catgtgtttctaggaaacaatgaatgtcaaaaaagcaa 2605367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 33 - 78
Target Start/End: Original strand, 48292387 - 48292432
Alignment:
Q  33 cggtagttaactattgctggggtgtttttggtcattttcatgtgtt 78  Q
    |||||||||||||  ||||| |||||||||||||||| ||||||||    
T  48292387 cggtagttaactaccgctggagtgtttttggtcatttacatgtgtt 48292432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 57 - 98
Target Start/End: Original strand, 53860895 - 53860936
Alignment:
Q  57 tttttggtcattttcatgtgtttctagaaaacaatgaatgtc 98  Q
    ||||||||||||| ||||||||||||| |||||||| |||||    
T  53860895 tttttggtcatttccatgtgtttctaggaaacaatggatgtc 53860936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 17 - 45
Target Start/End: Complemental strand, 24680818 - 24680790
Alignment:
Q  17 tctagttataagccagcggtagttaacta 45  Q
    |||||||||||||||||||||||||||||    
T  24680818 tctagttataagccagcggtagttaacta 24680790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 6 - 54
Target Start/End: Complemental strand, 32430591 - 32430543
Alignment:
Q  6 accgccgattttctagttataagccagcggtagttaactattgctgggg 54  Q
    ||||||||||||||||||||||| | | ||||||||||||  |||||||    
T  32430591 accgccgattttctagttataagtctgtggtagttaactaccgctgggg 32430543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 52; Significance: 2e-20; HSPs: 2)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 14 - 113
Target Start/End: Complemental strand, 11524 - 11425
Alignment:
Q  14 ttttctagttataagccagcggtagttaactattgctggggtgtttttggtcattttcatgtgtttctagaaaacaatgaatgtccaaaaagcaattctc 113  Q
    ||||||||||||||| | || |||||||||||  |||||  ||||||||||||||||||| ||||||||| ||||||| |||||  ||||||||||||||    
T  11524 ttttctagttataagtcggcagtagttaactacagctggaatgtttttggtcattttcatatgtttctaggaaacaatcaatgtgaaaaaagcaattctc 11425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 14 - 113
Target Start/End: Complemental strand, 19261 - 19162
Alignment:
Q  14 ttttctagttataagccagcggtagttaactattgctggggtgtttttggtcattttcatgtgtttctagaaaacaatgaatgtccaaaaagcaattctc 113  Q
    ||||||||||||||| | || |||||||||||  |||||  ||||||||||||||||||| ||||||||| ||||||| |||||  ||||||||||||||    
T  19261 ttttctagttataagtcggcagtagttaactacagctggaatgtttttggtcattttcatatgtttctaggaaacaatcaatgtgaaaaaagcaattctc 19162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 2e-20; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 14 - 113
Target Start/End: Complemental strand, 25939380 - 25939281
Alignment:
Q  14 ttttctagttataagccagcggtagttaactattgctggggtgtttttggtcattttcatgtgtttctagaaaacaatgaatgtccaaaaagcaattctc 113  Q
    |||| |||||||||||||||||||||||||||  ||| | |||||||||||| ||| ||| ||||||||| ||||||||||| | |||||| ||||||||    
T  25939380 ttttatagttataagccagcggtagttaactaccgcttgtgtgtttttggtcttttccatatgtttctaggaaacaatgaatattcaaaaaacaattctc 25939281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 6 - 45
Target Start/End: Complemental strand, 34677024 - 34676985
Alignment:
Q  6 accgccgattttctagttataagccagcggtagttaacta 45  Q
    |||||||||||||||||||||||||| |||||||||||||    
T  34677024 accgccgattttctagttataagccaacggtagttaacta 34676985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 56 - 104
Target Start/End: Original strand, 9040955 - 9041003
Alignment:
Q  56 gtttttggtcattttcatgtgtttctagaaaacaatgaatgtccaaaaa 104  Q
    |||||| ||||||| ||||||||||||| |||||||||||||| |||||    
T  9040955 gtttttagtcatttccatgtgtttctaggaaacaatgaatgtcaaaaaa 9041003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 6 - 46
Target Start/End: Original strand, 28798979 - 28799019
Alignment:
Q  6 accgccgattttctagttataagccagcggtagttaactat 46  Q
    ||||||| ||||||||||||||| |||||||||||||||||    
T  28798979 accgccggttttctagttataagtcagcggtagttaactat 28799019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 113
Target Start/End: Complemental strand, 33432151 - 33432049
Alignment:
Q  13 attttctagttataagccagcggtagttaactattgctggggtgtttttggt---cattttcatgtgtttctagaaaacaatgaatgtccaaaaagcaat 109  Q
    ||||||||||||||||  || || |||||| || ||||| |||||||||  |   ||||||||||| |||||||||||||||  |||| |||||| ||||    
T  33432151 attttctagttataagtaagtggcagttaattactgctgaggtgtttttttttatcattttcatgtatttctagaaaacaatagatgt-caaaaaacaat 33432053  T
Q  110 tctc 113  Q
    ||||    
T  33432052 tctc 33432049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 2e-20; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 6 - 113
Target Start/End: Complemental strand, 14613640 - 14613533
Alignment:
Q  6 accgccgattttctagttataagccagcggtagttaactattgctggggtgtttttggtcattttcatgtgtttctagaaaacaatgaatgtccaaaaag 105  Q
    |||||||||||||||||||||||||||| || | ||||||  | ||| ||||||||||| |||||||||||||||||| |||||||| |||    |||||    
T  14613640 accgccgattttctagttataagccagcagtggctaactaccgttggagtgtttttggttattttcatgtgtttctaggaaacaatggatgcgagaaaag 14613541  T
Q  106 caattctc 113  Q
    ||||||||    
T  14613540 caattctc 14613533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 13 - 97
Target Start/End: Complemental strand, 6706357 - 6706273
Alignment:
Q  13 attttctagttataagccagcggtagttaactattgctggggtgtttttggtcattttcatgtgtttctagaaaacaatgaatgt 97  Q
    ||||| |||||||||| || |||||||||||||  ||||   |||||||||| |||||||||||||| ||  |||||||||||||    
T  6706357 attttttagttataagtcaacggtagttaactaccgctgaaatgtttttggttattttcatgtgtttataagaaacaatgaatgt 6706273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 56 - 108
Target Start/End: Original strand, 10818875 - 10818927
Alignment:
Q  56 gtttttggtcattttcatgtgtttctagaaaacaatgaatgtccaaaaagcaa 108  Q
    |||||||||||||| ||||||||| |||||||||||| ||||| |||||||||    
T  10818875 gtttttggtcatttccatgtgtttttagaaaacaatggatgtcaaaaaagcaa 10818927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 54 - 113
Target Start/End: Complemental strand, 10818845 - 10818787
Alignment:
Q  54 gtgtttttggtcattttcatgtgtttctagaaaacaatgaatgtccaaaaagcaattctc 113  Q
    ||||||||||| ||||| ||||||||||||||||||||| ||||  ||||||||||||||    
T  10818845 gtgtttttggtaattttaatgtgtttctagaaaacaatg-atgttaaaaaagcaattctc 10818787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 14 - 113
Target Start/End: Original strand, 35924645 - 35924743
Alignment:
Q  14 ttttctagttataagccagcggtagttaactattgctggggtgtttttggtcattttcatgtgtttctagaaaacaatgaatgtccaaaaagcaattctc 113  Q
    ||||||||||||||| ||  ||||||||||||| ||| || ||| |||||| |||| ||| ||||||||| |||||||| ||||   |||||||||||||    
T  35924645 ttttctagttataagtcaatggtagttaactatcgct-ggatgtgtttggttatttccatatgtttctaggaaacaatggatgtgagaaaagcaattctc 35924743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 49 - 94
Target Start/End: Original strand, 4639521 - 4639566
Alignment:
Q  49 ctggggtgtttttggtcattttcatgtgtttctagaaaacaatgaa 94  Q
    |||||||||||||| |||||||||||||||||||  ||||||||||    
T  4639521 ctggggtgtttttgatcattttcatgtgtttctaagaaacaatgaa 4639566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 9 - 45
Target Start/End: Complemental strand, 14123083 - 14123047
Alignment:
Q  9 gccgattttctagttataagccagcggtagttaacta 45  Q
    |||| ||||||||||||||||||||||||||||||||    
T  14123083 gccggttttctagttataagccagcggtagttaacta 14123047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 6 - 69
Target Start/End: Complemental strand, 5506942 - 5506879
Alignment:
Q  6 accgccgattttctagttataagccagcggtagttaactattgctggggtgtttttggtcattt 69  Q
    |||||||||||||||||||||||||||  | |||||||||  |||| | |||||||||| ||||    
T  5506942 accgccgattttctagttataagccagtcgcagttaactaccgctgagatgtttttggttattt 5506879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 30 - 113
Target Start/End: Original strand, 28976687 - 28976770
Alignment:
Q  30 cagcggtagttaactattgctggggtgtttttggtcattttcatgtgtttctagaaaacaatgaatgtccaaaaagcaattctc 113  Q
    ||||||||||||||||| | | |  |||||||| |||||||||||| ||||||  |||||||| ||||   |||||||||||||    
T  28976687 cagcggtagttaactatcgtttgaatgtttttgatcattttcatgtatttctaagaaacaatggatgtgagaaaagcaattctc 28976770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 11 - 45
Target Start/End: Original strand, 30511846 - 30511880
Alignment:
Q  11 cgattttctagttataagccagcggtagttaacta 45  Q
    ||||||||||||||||||||||| |||||||||||    
T  30511846 cgattttctagttataagccagcagtagttaacta 30511880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 11 - 45
Target Start/End: Original strand, 30552186 - 30552220
Alignment:
Q  11 cgattttctagttataagccagcggtagttaacta 45  Q
    ||||||||||||||||||||||| |||||||||||    
T  30552186 cgattttctagttataagccagcagtagttaacta 30552220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 57 - 110
Target Start/End: Original strand, 4192001 - 4192054
Alignment:
Q  57 tttttggtcattttcatgtgtttctagaaaacaatgaatgtccaaaaagcaatt 110  Q
    ||||||||||||||||||||||| ||| |||||||| ||||  ||| |||||||    
T  4192001 tttttggtcattttcatgtgtttgtaggaaacaatggatgtgtaaacagcaatt 4192054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 51
Target Start/End: Complemental strand, 30513892 - 30513855
Alignment:
Q  14 ttttctagttataagccagcggtagttaactattgctg 51  Q
    ||||||||||||||| |||||||||||||||| |||||    
T  30513892 ttttctagttataagtcagcggtagttaactactgctg 30513855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 51
Target Start/End: Complemental strand, 30554232 - 30554195
Alignment:
Q  14 ttttctagttataagccagcggtagttaactattgctg 51  Q
    ||||||||||||||| |||||||||||||||| |||||    
T  30554232 ttttctagttataagtcagcggtagttaactactgctg 30554195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 56 - 108
Target Start/End: Complemental strand, 8367071 - 8367019
Alignment:
Q  56 gtttttggtcattttcatgtgtttctagaaaacaatgaatgtccaaaaagcaa 108  Q
    ||||||||||||||  ||| |||||||| |||||||| ||||| |||||||||    
T  8367071 gtttttggtcatttctatgggtttctaggaaacaatggatgtcaaaaaagcaa 8367019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 352 - 380
Target Start/End: Original strand, 11727230 - 11727258
Alignment:
Q  352 gaacaaattttttgttcttagctgctaaa 380  Q
    |||||||||||||||||||||||||||||    
T  11727230 gaacaaattttttgttcttagctgctaaa 11727258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 9 - 45
Target Start/End: Complemental strand, 12075967 - 12075931
Alignment:
Q  9 gccgattttctagttataagccagcggtagttaacta 45  Q
    |||| ||||||||||||||| ||||||||||||||||    
T  12075967 gccggttttctagttataagtcagcggtagttaacta 12075931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 57 - 97
Target Start/End: Complemental strand, 35924635 - 35924595
Alignment:
Q  57 tttttggtcattttcatgtgtttctagaaaacaatgaatgt 97  Q
    ||||||||||||||||||| ||||||||||| |||| ||||    
T  35924635 tttttggtcattttcatgtttttctagaaaataatggatgt 35924595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 2e-19; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 361 - 418
Target Start/End: Complemental strand, 47680588 - 47680531
Alignment:
Q  361 ttttgttcttagctgctaaattgtgggtccaagtatgccatgtaggatttaacaacca 418  Q
    |||||||||||||||||||||  |||||||||||||||||||||||||||||||||||    
T  47680588 ttttgttcttagctgctaaatattgggtccaagtatgccatgtaggatttaacaacca 47680531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 6 - 113
Target Start/End: Complemental strand, 30018670 - 30018564
Alignment:
Q  6 accgccgattttctagttataagccagcggtagttaactattgctggggtgtttttggtcattttcatgtgtttctagaaaacaatgaatgtccaaaaag 105  Q
    ||||||||||||||||||||||||  ||| ||||||||||  ||| | ||||||||| ||||||||||| | |||||| ||||||||  ||| |||||||    
T  30018670 accgccgattttctagttataagcacgcgatagttaactaccgcttgagtgtttttgatcattttcatgcgcttctaggaaacaatggttgt-caaaaag 30018572  T
Q  106 caattctc 113  Q
    ||||||||    
T  30018571 caattctc 30018564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 14 - 114
Target Start/End: Original strand, 49632894 - 49632995
Alignment:
Q  14 ttttctagttataagccagcggtagttaactattgctggggtgtttttggtcattttcatgtgtttctagaaaacaatgaatgtc-caaaaagcaattct 112  Q
    ||||||||||||||  ||||||||||||||||   |  || ||||||||||||||| |||||||||||||||| ||||| |||||  |||||||||||||    
T  49632894 ttttctagttataaatcagcggtagttaactaccacgaggatgtttttggtcatttccatgtgtttctagaaatcaatggatgtcaaaaaaagcaattct 49632993  T
Q  113 cg 114  Q
    ||    
T  49632994 cg 49632995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 57 - 91
Target Start/End: Complemental strand, 11985492 - 11985458
Alignment:
Q  57 tttttggtcattttcatgtgtttctagaaaacaat 91  Q
    |||||||||||||||||||||||||||||||||||    
T  11985492 tttttggtcattttcatgtgtttctagaaaacaat 11985458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 10 - 113
Target Start/End: Complemental strand, 39065401 - 39065299
Alignment:
Q  10 ccgattttctagttataagccagcggtagttaactattgctggggtgtttttggtcattttcatgtgtttctagaaaacaatgaatgtccaaaaagcaat 109  Q
    |||||||| |||||||||| ||||| |||||||||||  |||  ||||||||  |||||| ||| |||||||||  ||||||| ||||| | |||| |||    
T  39065401 ccgattttttagttataagtcagcg-tagttaactatcactgaagtgttttttatcatttccatatgtttctagggaacaatggatgtcaacaaagtaat 39065303  T
Q  110 tctc 113  Q
    ||||    
T  39065302 tctc 39065299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 448 - 530
Target Start/End: Complemental strand, 47680488 - 47680406
Alignment:
Q  448 attttactttatgtaggctcctcatatttcttctctcattttccaatatacctcttctctcactgcttttcttaccttttctg 530  Q
    |||||||||||||||||  |||| | |||||||||| ||  |||| ||||||||||||||| |  ||| |||||| |||||||    
T  47680488 attttactttatgtaggaccctcgtgtttcttctcttatcatccattatacctcttctctctccccttctcttactttttctg 47680406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 56 - 108
Target Start/End: Original strand, 30018687 - 30018740
Alignment:
Q  56 gtttttggtcattttcatgtg-tttctagaaaacaatgaatgtccaaaaagcaa 108  Q
    |||||||||||||| |||||| ||||||| |||||||| ||||| |||||||||    
T  30018687 gtttttggtcatttccatgtgttttctaggaaacaatggatgtcaaaaaagcaa 30018740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 14 - 97
Target Start/End: Complemental strand, 8258991 - 8258910
Alignment:
Q  14 ttttctagttataagccagcggtagttaactattgctggggtgtttttggtcattttcatgtgtttctagaaaacaatgaatgt 97  Q
    |||||||||||||||||| |  ||||||||||  |||| |   ||||| ||||||||||||||||| ||| |||||||| ||||    
T  8258991 ttttctagttataagccaacaatagttaactaccgctgag--ttttttagtcattttcatgtgtttttaggaaacaatggatgt 8258910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 33 - 113
Target Start/End: Complemental strand, 36724251 - 36724171
Alignment:
Q  33 cggtagttaactattgctggggtgtttttggtcattttcatgtgtttctagaaaacaatgaatgtccaaaaagcaattctc 113  Q
    |||||||||||||   ||||| ||||||||||||||| |||  | |||||||||||||  |||||  |||||| |||||||    
T  36724251 cggtagttaactaccactgggatgtttttggtcatttccatacgcttctagaaaacaacaaatgtaaaaaaaggaattctc 36724171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 9 - 45
Target Start/End: Complemental strand, 42486472 - 42486436
Alignment:
Q  9 gccgattttctagttataagccagcggtagttaacta 45  Q
    |||| |||||||||||||||||||| |||||||||||    
T  42486472 gccggttttctagttataagccagcagtagttaacta 42486436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 1e-18; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 12 - 92
Target Start/End: Original strand, 27866672 - 27866752
Alignment:
Q  12 gattttctagttataagccagcggtagttaactattgctggggtgtttttggtcattttcatgtgtttctagaaaacaatg 92  Q
    ||||||||||||||||| ||||||||||||||||| | | || |||||| |||||||||||| ||||||||| ||||||||    
T  27866672 gattttctagttataagtcagcggtagttaactatcgttcggttgttttcggtcattttcatatgtttctaggaaacaatg 27866752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 14 - 97
Target Start/End: Complemental strand, 48073099 - 48073016
Alignment:
Q  14 ttttctagttataagccagcggtagttaactattgctggggtgtttttggtcattttcatgtgtttctagaaaacaatgaatgt 97  Q
    |||||||||||||||||||   ||||||||||| ||| | || ||||||||||||| ||||||||||||  |||||| ||||||    
T  48073099 ttttctagttataagccagtaatagttaactatcgctagagtatttttggtcatttccatgtgtttctaataaacaaagaatgt 48073016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 5617944 - 5617900
Alignment:
Q  1 taatgaccgccgattttctagttataagccagcggtagttaacta 45  Q
    |||| ||||||| ||||||||||||||||||||||||||||||||    
T  5617944 taattaccgccggttttctagttataagccagcggtagttaacta 5617900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 13 - 45
Target Start/End: Complemental strand, 21311792 - 21311760
Alignment:
Q  13 attttctagttataagccagcggtagttaacta 45  Q
    |||||||||||||||||||||||||||||||||    
T  21311792 attttctagttataagccagcggtagttaacta 21311760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 64 - 108
Target Start/End: Complemental strand, 36390756 - 36390712
Alignment:
Q  64 tcattttcatgtgtttctagaaaacaatgaatgtccaaaaagcaa 108  Q
    |||||||||||||||||||||||||| | |||||| |||||||||    
T  36390756 tcattttcatgtgtttctagaaaacactaaatgtcaaaaaagcaa 36390712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 35 - 87
Target Start/End: Complemental strand, 27747425 - 27747373
Alignment:
Q  35 gtagttaactattgctggggtgtttttggtcattttcatgtgtttctagaaaa 87  Q
    |||||||||||  |||| | | ||||| |||||||||||||||||||||||||    
T  27747425 gtagttaactaccgctgagttatttttagtcattttcatgtgtttctagaaaa 27747373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 60 - 92
Target Start/End: Original strand, 39933632 - 39933664
Alignment:
Q  60 ttggtcattttcatgtgtttctagaaaacaatg 92  Q
    |||||||||||||||||||||||||||| ||||    
T  39933632 ttggtcattttcatgtgtttctagaaaataatg 39933664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 14 - 91
Target Start/End: Complemental strand, 30351528 - 30351451
Alignment:
Q  14 ttttctagttataagccagcggtagttaactattgctggggtgtttttggtcattttcatgtgtttctagaaaacaat 91  Q
    |||||||||||||||  ||  |||||||||||  | |||||||||||||||||||||||| ||||||||| |||||||    
T  30351528 ttttctagttataagttagaagtagttaactaccgttggggtgtttttggtcattttcatatgtttctaggaaacaat 30351451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 19 - 113
Target Start/End: Complemental strand, 3806267 - 3806174
Alignment:
Q  19 tagttataagccagcggtagttaactattgctggggtgtttttggtcattttcatgtgtttctagaaaacaatgaatgtccaaaaagcaattctc 113  Q
    |||||||||| |||| |||||| | ||||| |||| ||||||||||| |||| ||||||||||||||||| ||| ||||   |||||||||||||    
T  3806267 tagttataagtcagctgtagttgattattgttgggatgtttttggtc-tttttatgtgtttctagaaaacgatggatgtgacaaaagcaattctc 3806174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 57 - 104
Target Start/End: Complemental strand, 13613796 - 13613749
Alignment:
Q  57 tttttggtcattttcatgtgtttctagaaaacaatgaatgtccaaaaa 104  Q
    |||||||||||||||||||||||||||||||||||  ||||| |||||    
T  13613796 tttttggtcattttcatgtgtttctagaaaacaatagatgtcgaaaaa 13613749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 30 - 97
Target Start/End: Original strand, 16396652 - 16396719
Alignment:
Q  30 cagcggtagttaactattgctggggtgtttttggtcattttcatgtgtttctagaaaacaatgaatgt 97  Q
    ||||||||||||||||  | |||||||||||| |||||||||| || |||||| ||||||||| ||||    
T  16396652 cagcggtagttaactaccgttggggtgtttttagtcattttcacgtatttctaaaaaacaatggatgt 16396719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 14 - 53
Target Start/End: Complemental strand, 26221286 - 26221247
Alignment:
Q  14 ttttctagttataagccagcggtagttaactattgctggg 53  Q
    ||||||||||||||||||||||| ||||||||||||||||    
T  26221286 ttttctagttataagccagcggttgttaactattgctggg 26221247  T

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Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 14 - 78
Target Start/End: Original strand, 18142429 - 18142493
Alignment:
Q  14 ttttctagttataagccagcggtagttaactattgctggggtgtttttggtcattttcatgtgtt 78  Q
    ||||||||| |||| | |||| ||||||||||  |||| ||||||||| ||||||||||||||||    
T  18142429 ttttctagtcataaacaagcgctagttaactaccgctgaggtgtttttagtcattttcatgtgtt 18142493  T

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Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 14 - 60
Target Start/End: Original strand, 12120174 - 12120220
Alignment:
Q  14 ttttctagttataagccagcggtagttaactattgctggggtgtttt 60  Q
    |||||||||||||||| |||||||||||||||  |||||||| ||||    
T  12120174 ttttctagttataagctagcggtagttaactaccgctggggtatttt 12120220  T

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Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 12 - 54
Target Start/End: Original strand, 16185328 - 16185370
Alignment:
Q  12 gattttctagttataagccagcggtagttaactattgctgggg 54  Q
    |||||||||||||||||||| |||||||||||||  |||||||    
T  16185328 gattttctagttataagccaacggtagttaactaccgctgggg 16185370  T

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Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 6 - 46
Target Start/End: Original strand, 13613814 - 13613854
Alignment:
Q  6 accgccgattttctagttataagccagcggtagttaactat 46  Q
    |||| |||||||||||||| ||||||| |||||||||||||    
T  13613814 accgtcgattttctagttagaagccagtggtagttaactat 13613854  T

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Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 14 - 78
Target Start/End: Original strand, 22997001 - 22997065
Alignment:
Q  14 ttttctagttataagccagcggtagttaactattgctggggtgtttttggtcattttcatgtgtt 78  Q
    |||||||||||||| | ||  |||||||||||  ||||  || ||||||||||||||||||||||    
T  22997001 ttttctagttataaacaagttgtagttaactaccgctgaagtatttttggtcattttcatgtgtt 22997065  T

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Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 14 - 78
Target Start/End: Complemental strand, 23791400 - 23791336
Alignment:
Q  14 ttttctagttataagccagcggtagttaactattgctggggtgtttttggtcattttcatgtgtt 78  Q
    |||||||||||||| | ||  |||||||||||  ||||  || ||||||||||||||||||||||    
T  23791400 ttttctagttataaacaagttgtagttaactaccgctgaagtatttttggtcattttcatgtgtt 23791336  T

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Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 14 - 110
Target Start/End: Original strand, 37629609 - 37629704
Alignment:
Q  14 ttttctagttataagccagcggtagttaactattgctggggtgtttttggtcattttcatgtgtttctagaaaacaatgaatgtccaaaaagcaatt 110  Q
    ||||||||||||||| ||||||||||||||||| | | |  ||||||||||||||| ||||||||| ||  || |||| |||||  |||||||||||    
T  37629609 ttttctagttataagtcagcggtagttaactatcgat-gaatgtttttggtcatttccatgtgtttttaagaagcaataaatgtgaaaaaagcaatt 37629704  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 26 - 108
Target Start/End: Complemental strand, 13793751 - 13793669
Alignment:
Q  26 aagccagcggtagttaactattgctggggtgtttttggtcattttcatgtgtttctagaaaacaatgaatgtccaaaaagcaa 108  Q
    |||||| | |||||||||||  | ||||||||||||||||||| |||| ||||||||  |||||||| ||||| ||| |||||    
T  13793751 aagccaaccgtagttaactaccgttggggtgtttttggtcattctcatatgtttctaagaaacaatggatgtcaaaacagcaa 13793669  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 56 - 104
Target Start/End: Complemental strand, 37096644 - 37096596
Alignment:
Q  56 gtttttggtcattttcatgtgtttctagaaaacaatgaatgtccaaaaa 104  Q
    ||||||| |||||| |||||||||||||||||||||||| ||| |||||    
T  37096644 gtttttgatcatttccatgtgtttctagaaaacaatgaaggtcaaaaaa 37096596  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 22 - 92
Target Start/End: Original strand, 39994519 - 39994590
Alignment:
Q  22 ttataagccagcggtagttaactattgctggggtgtttttgg-tcattttcatgtgtttctagaaaacaatg 92  Q
    ||||||| || |||||||||||| ||| |||  | ||||||| |||||| ||||||||||||||||||||||    
T  39994519 ttataagtcaacggtagttaactgttgttggaatttttttgggtcatttccatgtgtttctagaaaacaatg 39994590  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 6 - 46
Target Start/End: Original strand, 4984009 - 4984049
Alignment:
Q  6 accgccgattttctagttataagccagcggtagttaactat 46  Q
    |||| ||||||||||||||||||  ||||||||||||||||    
T  4984009 accgtcgattttctagttataagttagcggtagttaactat 4984049  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 14 - 54
Target Start/End: Complemental strand, 13798881 - 13798841
Alignment:
Q  14 ttttctagttataagccagcggtagttaactattgctgggg 54  Q
    ||||| ||||||||| |||||||||||||||| ||||||||    
T  13798881 ttttcgagttataagtcagcggtagttaactactgctgggg 13798841  T

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Target: scaffold0197 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 13 - 45
Target Start/End: Complemental strand, 26056 - 26024
Alignment:
Q  13 attttctagttataagccagcggtagttaacta 45  Q
    |||||||||||||||| ||||||||||||||||    
T  26056 attttctagttataagtcagcggtagttaacta 26024  T

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