View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12234_low_3 (Length: 550)
Name: NF12234_low_3
Description: NF12234
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12234_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 292; Significance: 1e-164; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 148 - 532
Target Start/End: Original strand, 32405161 - 32405566
Alignment:
| Q |
148 |
gattccaaagaacaaggatgcgttggtattggaatgtgaattagagatcagacaagtcaatatgttggcacaataactgcgtg---gtttaacggctgtc |
244 |
Q |
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| T |
32405161 |
gattccaaagaacaaggatgcattggtattggaatgtgaattagagatcagacaagtcaatctgttagcacaataactgcgtaaatgtttaacggctgtc |
32405260 |
T |
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| Q |
245 |
caccaacgattgaagcagaagcttaggtgtaaagaaagcactcacctggcttgatgagttgggattatcgaagataaccattgaactcgattgcaaagaa |
344 |
Q |
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| T |
32405261 |
caccaacgattgaagcagaagcttaggtgtaaagaaagcactcacctggcttgatgagttgggattatcgaagataaccattgaactcgattgcaaagaa |
32405360 |
T |
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| Q |
345 |
gtaatggatggtatctttgataattctaggaaccaaattgaattgagagtcattttaaatgattttagatcnnnnnnngaatttctctccaaactttata |
444 |
Q |
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| T |
32405361 |
gtagtggatggtatctttgataattctaggaaccaaattgaattgagagtcattttaaatgattttagatctttttttgaatttctctccaaactttata |
32405460 |
T |
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| Q |
445 |
ataagttttattcatggacaaacataccatgtc------------------gcgtcaatgttgcatgttaggcaccatatttttaatttcatcccaacat |
526 |
Q |
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| T |
32405461 |
ataagttttattcatggacaaacataccatgtcgctcataacttagccagggcgtcaatgttgcatgttaggcaccatatttttaatttcatcccaacat |
32405560 |
T |
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| Q |
527 |
gtattt |
532 |
Q |
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|||||| |
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| T |
32405561 |
gtattt |
32405566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 32405064 - 32405163
Alignment:
| Q |
1 |
ctgtgtcactcaacagtccaagaattgcttagacgatggcagcgtgttcgctcgcgttccacaattgatcagtttgcggcaggaaatgctgcagcccgat |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32405064 |
ctgtgtcactcaacagtccaagaattgcttagacgatggcagcgtgttcgcacgcgttccacaattgatcagtttgcggcaggaaatgctgcagcccgat |
32405163 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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