View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12234_low_6 (Length: 239)
Name: NF12234_low_6
Description: NF12234
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12234_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 16 - 220
Target Start/End: Original strand, 18015833 - 18016037
Alignment:
| Q |
16 |
cagatgcagtgaggttgtgggtgaatgagaaagctgactatgattataatagtaacacatgtgcttctggtaaagtgtgtggccattatactcaggttgt |
115 |
Q |
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|||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18015833 |
cagatgcagtgaagttgtgggtgaatgagaaagctgactataattataatagtaacacatgtgcttctggtaaagtgtgtggccattatactcaggttgt |
18015932 |
T |
|
| Q |
116 |
ttggagaaactcacaacgtgttggatgtgccaaagtgagatgtgataataatagaggaacattcattacatgcaattacgacccaccaggcaactatgtt |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18015933 |
ttggagaaactcacaacgtgttggatgtgccaaagtgagatgtgataataatagaggaacattcattacatgcaattacgacccaccaggcaactatgtt |
18016032 |
T |
|
| Q |
216 |
ggtga |
220 |
Q |
| |
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||||| |
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| T |
18016033 |
ggtga |
18016037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 197; Significance: 1e-107; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 16 - 220
Target Start/End: Original strand, 2462510 - 2462714
Alignment:
| Q |
16 |
cagatgcagtgaggttgtgggtgaatgagaaagctgactatgattataatagtaacacatgtgcttctggtaaagtgtgtggccattatactcaggttgt |
115 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
2462510 |
cagatgcagtgaagttgtgggtgaatgagaaagctgactatgattataatagtaacacatgtgcttctggtaaagtgtgtggccattatacccaggttgt |
2462609 |
T |
|
| Q |
116 |
ttggagaaactcacaacgtgttggatgtgccaaagtgagatgtgataataatagaggaacattcattacatgcaattacgacccaccaggcaactatgtt |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2462610 |
ttggagaaactcacaacgtgttggatgtgccaaagtgagatgtgataataatagaggaacattcattacatgcaattacgacccaccaggcaactatgtt |
2462709 |
T |
|
| Q |
216 |
ggtga |
220 |
Q |
| |
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||||| |
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| T |
2462710 |
ggtga |
2462714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 16 - 220
Target Start/End: Complemental strand, 3063487 - 3063283
Alignment:
| Q |
16 |
cagatgcagtgaggttgtgggtgaatgagaaagctgactatgattataatagtaacacatgtgcttctggtaaagtgtgtggccattatactcaggttgt |
115 |
Q |
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|||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3063487 |
cagatgcagtgaagttgtgggtgaatgagaaagctgactataattataatagtaacacatgtgcttctggtaaagtgtgtggccattatactcaggttgt |
3063388 |
T |
|
| Q |
116 |
ttggagaaactcacaacgtgttggatgtgccaaagtgagatgtgataataatagaggaacattcattacatgcaattacgacccaccaggcaactatgtt |
215 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3063387 |
ttggagaaactcacaacgtgttggatgtgccaaagtgagatgtgataataatagaggaacattcattacatgcaattacgacccaccaggcaactatgtt |
3063288 |
T |
|
| Q |
216 |
ggtga |
220 |
Q |
| |
|
||||| |
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| T |
3063287 |
ggtga |
3063283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 16 - 210
Target Start/End: Original strand, 2466558 - 2466752
Alignment:
| Q |
16 |
cagatgcagtgaggttgtgggtgaatgagaaagctgactatgattataatagtaacacatgtgcttctggtaaagtgtgtggccattatactcaggttgt |
115 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
2466558 |
cagatgcagtgaagttgtgggtgaatgagaaagctgactatgattataatagtaacacatgtgcttctggtaaagtgtgtggccattatacccaggttgt |
2466657 |
T |
|
| Q |
116 |
ttggagaaactcacaacgtgttggatgtgccaaagtgagatgtgataataatagaggaacattcattacatgcaattacgacccaccaggcaact |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2466658 |
ttggagaaactcacaacgtgttggatgtgccaaagtgagatgtgataataatagaggaacattcattacatgcaattacgacccaccaggcaact |
2466752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 13 - 218
Target Start/End: Original strand, 2457931 - 2458133
Alignment:
| Q |
13 |
gcacagatgcagtgaggttgtgggtgaatgagaaagctgactatgattataatagtaacacatgtgcttctggtaaagtgtgtggccattatactcaggt |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||| | |||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
2457931 |
gcacagatgcagtgaggttgtgggtgaatgagaaaaacgactataactataatagtaacacatgtgcttctggtaaagtgtgtggccattacactcaggt |
2458030 |
T |
|
| Q |
113 |
tgtttggagaaactcacaacgtgttggatgtgccaaagtgagatgtgataataatagaggaacattcattacatgcaattacgacccaccaggcaactat |
212 |
Q |
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||||||||||||| || | ||| |||||||||||||||| ||||| ||||||| |||| |||||||||| ||||||||||| ||||||||||||||| |
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| T |
2458031 |
tgtttggagaaacacaaagcgtattggatgtgccaaagtaagatg---taataatggaggcacattcattatttgcaattacgatccaccaggcaactat |
2458127 |
T |
|
| Q |
213 |
gttggt |
218 |
Q |
| |
|
|||||| |
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|
| T |
2458128 |
gttggt |
2458133 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 24 - 217
Target Start/End: Original strand, 2469891 - 2470081
Alignment:
| Q |
24 |
gtgaggttgtgggtgaatgagaaagctgactatgattataatagtaacacatgtgcttctggtaaagtgtgtggccattatactcaggttgtttggagaa |
123 |
Q |
| |
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|||| |||||||||| |||| ||| | |||||||||||| |||||| |||||||| |||| || |||||||||| || |||||||| |||||||||| |
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| T |
2469891 |
gtgaagttgtgggtggatgaaaaaccctactatgattatagtagtaattcatgtgctaatggtgaaatgtgtggccactacactcaggtggtttggagaa |
2469990 |
T |
|
| Q |
124 |
actcacaacgtgttggatgtgccaaagtgagatgtgataataatagaggaacattcattacatgcaattacgacccaccaggcaactatgttgg |
217 |
Q |
| |
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|| ||||||| |||||||||||||||||| ||| |||||| |||||||||||||||| ||||||||||||||||||||||||||| |||| |
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| T |
2469991 |
acacacaacggattggatgtgccaaagtgaaatg---taataacggaggaacattcattacttgcaattacgacccaccaggcaactatattgg |
2470081 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 98 - 217
Target Start/End: Original strand, 2474236 - 2474352
Alignment:
| Q |
98 |
ccattatactcaggttgtttggagaaactcacaacgtgttggatgtgccaaagtgagatgtgataataatagaggaacattcattacatgcaattacgac |
197 |
Q |
| |
|
||||||||||||||| |||||||||||| || ||||| |||||||||||||||||| ||||| ||||| |||||||||||||||| |||||||||||| |
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| T |
2474236 |
ccattatactcaggtggtttggagaaacacaaaacgtattggatgtgccaaagtgaaatgtg---ataatggaggaacattcattacttgcaattacgac |
2474332 |
T |
|
| Q |
198 |
ccaccaggcaactatgttgg |
217 |
Q |
| |
|
|| || ||||||||| |||| |
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|
| T |
2474333 |
ccccctggcaactatattgg |
2474352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 126 - 202
Target Start/End: Original strand, 2471017 - 2471090
Alignment:
| Q |
126 |
tcacaacgtgttggatgtgccaaagtgagatgtgataataatagaggaacattcattacatgcaattacgacccacc |
202 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| ||||| |||| ||||||||||| |||||||| |||||||| |
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| T |
2471017 |
tcacaacgtgttggatgtggcaaagtgagatgtg---ataatggaggcacattcattacttgcaattatgacccacc |
2471090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 98 - 164
Target Start/End: Original strand, 2486510 - 2486576
Alignment:
| Q |
98 |
ccattatactcaggttgtttggagaaactcacaacgtgttggatgtgccaaagtgagatgtgataat |
164 |
Q |
| |
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|||||||||||||||||||||| ||| |||| |||||||||||||| |||||||| |||||||||| |
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| T |
2486510 |
ccattatactcaggttgtttgggaaaaatcactacgtgttggatgtggcaaagtgaaatgtgataat |
2486576 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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