View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12235_high_16 (Length: 272)
Name: NF12235_high_16
Description: NF12235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12235_high_16 |
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| [»] scaffold0003 (2 HSPs) |
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Alignment Details
Target: scaffold0003 (Bit Score: 145; Significance: 2e-76; HSPs: 2)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 48 - 241
Target Start/End: Complemental strand, 34836 - 34641
Alignment:
| Q |
48 |
aagtgctgctatattaattttgaccaagtcaaatcaaccaaagagctgctatagtattata--gtacacaaaaggaatactctaaaaatatataattctg |
145 |
Q |
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| T |
34836 |
aagtgctgctatattaattttgactaagtcaaatcaaccaaagtgctgctatagtattatatagtacacagaaggaatactctaaaaatatataattatg |
34737 |
T |
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| Q |
146 |
cacatgtatgtcactttgtgtagctgaaaccattttcattatatatgaacatgctttgctgtcaaagtttataaatgaagcttataagtggtcata |
241 |
Q |
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| T |
34736 |
cacatgtatgtcactttgtgtagctaaaaccattttcattatatatgaccatgctttgctgtcaaagtttataaatgaaatctatatgtggtcata |
34641 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003; HSP #2
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 48 - 241
Target Start/End: Complemental strand, 41506 - 41308
Alignment:
| Q |
48 |
aagtgctgctatattaattttgaccaagtcaaatcaaccaaagagctgctatagtattata--gtacacaaaaggaatactctaaaaatatataattctg |
145 |
Q |
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| T |
41506 |
aagtgctgctatattaattttgactaagtcaaatcaaccaaagtgttgatatagtattatatagtacaaagaaggaatactctaaaaaaatataattatg |
41407 |
T |
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| Q |
146 |
cacatgtatgtcactttgtgtagctgaaaccattttcattatata---tgaacatgctttgctgtcaaagtttataaatgaagcttataagtggtcata |
241 |
Q |
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| T |
41406 |
cacatgtatgtcactttgtgtagctaaaaccattttcattatatacgtcgaccatgctttgctgtcaaagtttataaatgaaatctatatgtggtcata |
41308 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 117; Significance: 1e-59; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 48 - 241
Target Start/End: Complemental strand, 14455643 - 14455449
Alignment:
| Q |
48 |
aagtgctgctatattaattttgaccaagtcaaatcaaccaaagagctgctatagtattata--gtacacaaaaggaatactctaaaaatatataattctg |
145 |
Q |
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||||| ||||||||||||||||| |||||||||||||||||| ||||||||||||||||| ||||| | ||||| ||||||||||||||| |||| || |
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| T |
14455643 |
aagtgttgctatattaattttgattaagtcaaatcaaccaaagtgctgctatagtattatatagtacaaagaagga-tactctaaaaatataaaattatg |
14455545 |
T |
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| Q |
146 |
cacatgtatgtcactttgtgtagctgaaaccattttcattatatatgaacatgctttgctgtcaaagtttataaatgaagcttataagtggtcata |
241 |
Q |
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| T |
14455544 |
cacatgtatgtcactttgtgtagctaaaaccattttcattatatatgaccatgcttttctgtcaaagtttataaatgaaatctatatgtggtcata |
14455449 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 114; Significance: 7e-58; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 48 - 241
Target Start/End: Original strand, 27445852 - 27446050
Alignment:
| Q |
48 |
aagtgctgctatattaattttgaccaagtcaaatcaaccaaagagctgctatagtattata--gtacacaaaaggaatactctaaaaatatataattctg |
145 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||| | || |||||||||||| ||||| | ||||||||||||||||| |||||||| || |
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| T |
27445852 |
aagtgctgctatattaattttgactaagtcaaatcaaccaaagtgttgatatagtattatatagtacaaagaaggaatactctaaaaaaatataattatg |
27445951 |
T |
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| Q |
146 |
cacatgtatgtcactttgtgtagctgaaaccattttcattatata---tgaacatgctttgctgtcaaagtttataaatgaagcttataagtggtcata |
241 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||| || |||||||||||||||||||||||||||||| |||| ||||||||| |
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| T |
27445952 |
cacatgtatgtcactttgtgtagctaaaaccattttcattatatacgtcgaccatgctttgctgtcaaagtttataaatgaaatctatatgtggtcata |
27446050 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 195 - 254
Target Start/End: Complemental strand, 46833357 - 46833298
Alignment:
| Q |
195 |
catgctttgctgtcaaagtttataaatgaagcttataagtggtcataaaactaatgtatc |
254 |
Q |
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| T |
46833357 |
catgtttttctgtaaaagtttataaatgaagcctatatgtggtcataaaactaatgtatc |
46833298 |
T |
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