View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12235_high_18 (Length: 243)

Name: NF12235_high_18
Description: NF12235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12235_high_18
NF12235_high_18
[»] chr4 (26 HSPs)
chr4 (1-237)||(40774226-40774463)
chr4 (12-108)||(14126118-14126214)
chr4 (13-108)||(26504306-26504401)
chr4 (62-108)||(3712516-3712562)
chr4 (51-108)||(35723391-35723449)
chr4 (51-105)||(35952627-35952681)
chr4 (51-108)||(13134445-13134502)
chr4 (51-108)||(40613445-40613502)
chr4 (63-107)||(36635331-36635375)
chr4 (1-100)||(19482613-19482712)
chr4 (49-107)||(10013897-10013955)
chr4 (49-107)||(10021038-10021096)
chr4 (64-106)||(22440609-22440651)
chr4 (62-108)||(33950142-33950188)
chr4 (63-105)||(49652982-49653024)
chr4 (64-105)||(903930-903971)
chr4 (55-108)||(999355-999408)
chr4 (63-104)||(7214533-7214574)
chr4 (52-105)||(7670680-7670733)
chr4 (56-101)||(56257933-56257978)
chr4 (64-108)||(5775365-5775409)
chr4 (62-102)||(8423731-8423771)
chr4 (51-107)||(15029760-15029816)
chr4 (64-108)||(18513248-18513292)
chr4 (64-108)||(19230316-19230360)
chr4 (64-108)||(44081584-44081628)
[»] chr6 (30 HSPs)
chr6 (1-108)||(7086740-7086847)
chr6 (1-101)||(8805586-8805686)
chr6 (1-108)||(32299220-32299327)
chr6 (62-108)||(30866151-30866197)
chr6 (51-108)||(9629378-9629435)
chr6 (51-108)||(19040347-19040404)
chr6 (51-108)||(21924942-21924999)
chr6 (51-108)||(26562684-26562741)
chr6 (51-108)||(33001296-33001353)
chr6 (1-108)||(7377930-7378031)
chr6 (56-108)||(9025501-9025553)
chr6 (64-108)||(9617442-9617486)
chr6 (1-100)||(426529-426628)
chr6 (1-100)||(1681703-1681802)
chr6 (53-104)||(7996389-7996440)
chr6 (53-104)||(8022361-8022412)
chr6 (1-100)||(9107385-9107484)
chr6 (29-108)||(9658852-9658931)
chr6 (51-147)||(20371074-20371174)
chr6 (62-108)||(7265600-7265646)
chr6 (51-108)||(30851597-30851652)
chr6 (45-108)||(6299501-6299564)
chr6 (45-108)||(6306311-6306374)
chr6 (1-108)||(7938061-7938168)
chr6 (1-108)||(9027123-9027230)
chr6 (1-108)||(10294052-10294159)
chr6 (5-78)||(25207713-25207786)
chr6 (62-107)||(32511674-32511719)
chr6 (68-108)||(11591877-11591917)
chr6 (55-107)||(17168893-17168945)
[»] chr7 (23 HSPs)
chr7 (24-108)||(19206018-19206102)
chr7 (1-108)||(17851376-17851483)
chr7 (1-107)||(5956218-5956324)
chr7 (54-108)||(24146814-24146868)
chr7 (1-108)||(26329389-26329496)
chr7 (51-108)||(32308115-32308172)
chr7 (64-108)||(3520349-3520393)
chr7 (2-146)||(21140951-21141095)
chr7 (32-100)||(30813788-30813856)
chr7 (53-108)||(5548673-5548728)
chr7 (54-108)||(9482932-9482986)
chr7 (62-108)||(20549797-20549843)
chr7 (51-101)||(29787383-29787433)
chr7 (62-108)||(42720897-42720943)
chr7 (51-108)||(2948678-2948735)
chr7 (51-108)||(22484020-22484077)
chr7 (63-108)||(22868049-22868094)
chr7 (32-108)||(7328698-7328774)
chr7 (64-108)||(8239057-8239101)
chr7 (64-108)||(12278843-12278887)
chr7 (49-105)||(23191889-23191945)
chr7 (64-108)||(27732246-27732290)
chr7 (64-108)||(38134413-38134457)
[»] chr8 (27 HSPs)
chr8 (31-108)||(27213522-27213599)
chr8 (51-108)||(31236584-31236641)
chr8 (27-108)||(11927093-11927174)
chr8 (55-108)||(12606836-12606889)
chr8 (1-108)||(24362209-24362316)
chr8 (1-107)||(11803204-11803310)
chr8 (51-108)||(13844603-13844660)
chr8 (58-108)||(3025553-3025603)
chr8 (70-108)||(18964191-18964229)
chr8 (62-108)||(34897091-34897137)
chr8 (31-100)||(4298901-4298970)
chr8 (27-108)||(11944636-11944717)
chr8 (64-108)||(4786345-4786389)
chr8 (56-107)||(14731712-14731763)
chr8 (9-100)||(22651929-22652020)
chr8 (51-106)||(39954288-39954343)
chr8 (64-110)||(8798836-8798882)
chr8 (62-108)||(20785472-20785518)
chr8 (70-108)||(28747442-28747480)
chr8 (1-107)||(36934615-36934721)
chr8 (64-105)||(3677794-3677835)
chr8 (31-108)||(12570515-12570592)
chr8 (63-108)||(14134706-14134751)
chr8 (64-105)||(34201056-34201097)
chr8 (4-108)||(7658411-7658515)
chr8 (64-108)||(12985400-12985444)
chr8 (53-101)||(24017452-24017500)
[»] chr2 (27 HSPs)
chr2 (2-107)||(21616708-21616813)
chr2 (1-108)||(18276466-18276573)
chr2 (32-108)||(10535766-10535842)
chr2 (31-101)||(21782832-21782902)
chr2 (51-108)||(896206-896263)
chr2 (51-108)||(18420441-18420498)
chr2 (63-106)||(2665897-2665940)
chr2 (25-108)||(24011006-24011088)
chr2 (53-108)||(37411251-37411306)
chr2 (31-101)||(4332901-4332971)
chr2 (70-108)||(20242734-20242772)
chr2 (62-108)||(23718032-23718078)
chr2 (62-108)||(24105704-24105750)
chr2 (54-96)||(27084260-27084302)
chr2 (51-105)||(28677904-28677958)
chr2 (51-101)||(31284043-31284093)
chr2 (62-108)||(31808083-31808129)
chr2 (62-108)||(34691812-34691858)
chr2 (62-108)||(34714224-34714270)
chr2 (62-108)||(44860326-44860372)
chr2 (63-108)||(5367199-5367244)
chr2 (63-108)||(30471045-30471090)
chr2 (64-108)||(18570980-18571024)
chr2 (64-108)||(30527602-30527646)
chr2 (64-108)||(35449521-35449565)
chr2 (64-108)||(39279683-39279727)
chr2 (64-108)||(44605146-44605190)
[»] chr3 (23 HSPs)
chr3 (9-108)||(25093455-25093554)
chr3 (56-104)||(9624641-9624689)
chr3 (70-108)||(13414483-13414521)
chr3 (70-108)||(35222952-35222990)
chr3 (51-108)||(8383252-8383309)
chr3 (56-101)||(11251978-11252023)
chr3 (54-107)||(11313808-11313861)
chr3 (65-108)||(8930837-8930880)
chr3 (49-108)||(9789111-9789170)
chr3 (1-108)||(34307787-34307894)
chr3 (49-107)||(3587341-3587399)
chr3 (51-97)||(5339103-5339149)
chr3 (62-108)||(7928456-7928502)
chr3 (62-108)||(8039842-8039888)
chr3 (113-147)||(27277780-27277814)
chr3 (62-108)||(38731224-38731270)
chr3 (62-108)||(49505161-49505207)
chr3 (51-100)||(28917996-28918045)
chr3 (63-108)||(29508451-29508496)
chr3 (51-108)||(48202276-48202333)
chr3 (59-107)||(23184080-23184128)
chr3 (64-108)||(32804547-32804591)
chr3 (64-108)||(40150578-40150622)
[»] scaffold0020 (1 HSPs)
scaffold0020 (34-108)||(135319-135393)
[»] chr1 (39 HSPs)
chr1 (1-145)||(398735-398879)
chr1 (1-108)||(7918218-7918325)
chr1 (1-108)||(10577742-10577849)
chr1 (1-100)||(41877485-41877584)
chr1 (62-107)||(6427356-6427401)
chr1 (1-102)||(34298381-34298482)
chr1 (32-108)||(1864887-1864962)
chr1 (51-107)||(13436453-13436509)
chr1 (1-108)||(1486716-1486823)
chr1 (1-100)||(47989443-47989541)
chr1 (3-108)||(9709767-9709872)
chr1 (49-106)||(19324555-19324612)
chr1 (51-108)||(36878456-36878513)
chr1 (51-108)||(39953153-39953210)
chr1 (56-105)||(40181871-40181920)
chr1 (1-108)||(17831538-17831639)
chr1 (51-107)||(19562629-19562685)
chr1 (55-103)||(28460767-28460815)
chr1 (8-108)||(38503272-38503372)
chr1 (51-106)||(12443469-12443524)
chr1 (1-103)||(16927197-16927297)
chr1 (64-107)||(17425101-17425144)
chr1 (49-108)||(32724105-32724164)
chr1 (53-107)||(25098563-25098617)
chr1 (66-108)||(25361896-25361938)
chr1 (70-108)||(30749854-30749892)
chr1 (70-108)||(30771305-30771343)
chr1 (66-108)||(44482240-44482282)
chr1 (51-100)||(1262879-1262928)
chr1 (64-101)||(2288181-2288218)
chr1 (31-100)||(5376515-5376584)
chr1 (63-108)||(10233260-10233305)
chr1 (51-108)||(29163388-29163445)
chr1 (64-108)||(16164322-16164366)
chr1 (48-104)||(22781434-22781490)
chr1 (56-108)||(30847727-30847779)
chr1 (64-108)||(39130774-39130818)
chr1 (64-108)||(40747780-40747824)
chr1 (64-108)||(52903257-52903301)
[»] scaffold0007 (1 HSPs)
scaffold0007 (1-108)||(225275-225382)
[»] chr5 (28 HSPs)
chr5 (12-108)||(16203802-16203898)
chr5 (61-108)||(23012415-23012462)
chr5 (62-107)||(6471897-6471942)
chr5 (64-108)||(17925179-17925223)
chr5 (64-108)||(32630742-32630786)
chr5 (56-108)||(41091264-41091316)
chr5 (53-108)||(3966500-3966555)
chr5 (1-108)||(6401443-6401550)
chr5 (1-100)||(17177038-17177137)
chr5 (1-100)||(21522695-21522794)
chr5 (1-100)||(21533261-21533360)
chr5 (54-108)||(12927652-12927706)
chr5 (1-107)||(15410456-15410562)
chr5 (64-102)||(30098334-30098372)
chr5 (62-108)||(30502395-30502441)
chr5 (62-108)||(30542738-30542784)
chr5 (70-108)||(39758286-39758324)
chr5 (71-105)||(42029767-42029801)
chr5 (51-100)||(8420022-8420071)
chr5 (53-106)||(18592070-18592123)
chr5 (51-108)||(27144458-27144515)
chr5 (51-100)||(31084318-31084367)
chr5 (62-107)||(32766951-32766996)
chr5 (64-108)||(9449477-9449521)
chr5 (56-108)||(18421848-18421900)
chr5 (40-108)||(18607104-18607172)
chr5 (27-107)||(19293431-19293511)
chr5 (55-107)||(39205879-39205931)
[»] scaffold0116 (1 HSPs)
scaffold0116 (1-108)||(9843-9950)
[»] scaffold0022 (2 HSPs)
scaffold0022 (64-107)||(99901-99944)
scaffold0022 (64-108)||(90851-90895)
[»] scaffold0110 (1 HSPs)
scaffold0110 (51-108)||(28845-28902)
[»] scaffold0652 (1 HSPs)
scaffold0652 (2-100)||(477-575)
[»] scaffold0475 (1 HSPs)
scaffold0475 (2-80)||(3262-3340)
[»] scaffold0123 (1 HSPs)
scaffold0123 (62-108)||(44532-44578)
[»] scaffold0085 (1 HSPs)
scaffold0085 (63-108)||(26400-26445)
[»] scaffold0036 (1 HSPs)
scaffold0036 (63-108)||(9754-9799)
[»] scaffold0376 (1 HSPs)
scaffold0376 (56-108)||(6312-6364)
[»] scaffold0011 (1 HSPs)
scaffold0011 (64-108)||(240028-240072)


Alignment Details
Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 40774226 - 40774463
Alignment:
Q  1 tatgaaacacggatacagacacagataccagacacgacacagataccaatacgccgacattgctaataattttagaaaatcagataattcaatgtaatta 100  Q
    |||||||||||||||||||||| |||||||||||||||||| |||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||    
T  40774226 tatgaaacacggatacagacacggataccagacacgacacatataccaatacgccgactttgctaataattttataaaatcagataattcaatgtaatta 40774325  T
Q  101 tatgtgtccggaacatgtctaatccgagtagtgtatgtgcttcataggataggattggatccgttaataacttaatattgatcacttatctgaagtac-a 199  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |    
T  40774326 tatgtgtccggaacacgtctaatccgagtagtgtatgtgcttcataggataggattggatccgttaataacttgatattgatcacttatctgaagtacta 40774425  T
Q  200 agaggtttcaagcagtgtagtaaaactgttcttctctc 237  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  40774426 agaggtttcaagcagtgtagtaaaactgttcttatctc 40774463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 12 - 108
Target Start/End: Complemental strand, 14126214 - 14126118
Alignment:
Q  12 gatacagacacagataccagacacgacacagataccaatacgccgacattgctaataattttagaaaatcagataattcaatgtaattatatgtgtc 108  Q
    |||||||||||||| |   ||||||||||||| || || ||||||||| || ||||||||| | ||| ||| |||||||| |||||||||| |||||    
T  14126214 gatacagacacagacagtggacacgacacagacactaacacgccgacactgttaataatttgataaagtcacataattcagtgtaattataagtgtc 14126118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 108
Target Start/End: Complemental strand, 26504401 - 26504306
Alignment:
Q  13 atacagacacagataccagacacgacacagataccaatacgccgacattgctaataattttagaaaatcagataattcaatgtaattatatgtgtc 108  Q
    ||||||||||||||||| || | ||||| || ||  | ||  ||||| |||||||||||| ||||||||| ||| |||| ||||||||||||||||    
T  26504401 atacagacacagataccggatatgacacggacactgaaacatcgacactgctaataatttaagaaaatcaaatagttcagtgtaattatatgtgtc 26504306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 62 - 108
Target Start/End: Complemental strand, 3712562 - 3712516
Alignment:
Q  62 gctaataattttagaaaatcagataattcaatgtaattatatgtgtc 108  Q
    ||||||||||| |||||||||  ||||||||||||||||||||||||    
T  3712562 gctaataatttgagaaaatcatgtaattcaatgtaattatatgtgtc 3712516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 51 - 108
Target Start/End: Complemental strand, 35723449 - 35723391
Alignment:
Q  51 acgccgacattgctaataattttagaaaat-cagataattcaatgtaattatatgtgtc 108  Q
    |||||||||  ||||||||||| ||||||| || |||||||||||||||||||||||||    
T  35723449 acgccgacaccgctaataatttgagaaaatacacataattcaatgtaattatatgtgtc 35723391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 51 - 105
Target Start/End: Complemental strand, 35952681 - 35952627
Alignment:
Q  51 acgccgacattgctaataattttagaaaatcagataattcaatgtaattatatgt 105  Q
    |||||| || |||||||||||| | ||||||| ||||||||||||||||||||||    
T  35952681 acgccgccactgctaataatttgataaaatcatataattcaatgtaattatatgt 35952627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 51 - 108
Target Start/End: Original strand, 13134445 - 13134502
Alignment:
Q  51 acgccgacattgctaataattttagaaaatcagataattcaatgtaattatatgtgtc 108  Q
    ||||||||| |||| ||||||| ||||||||| |||||| | ||||||||||||||||    
T  13134445 acgccgacactgcttataatttaagaaaatcacataatttagtgtaattatatgtgtc 13134502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 51 - 108
Target Start/End: Original strand, 40613445 - 40613502
Alignment:
Q  51 acgccgacattgctaataattttagaaaatcagataattcaatgtaattatatgtgtc 108  Q
    |||||||||  ||||||| ||| ||||||||| |||||||| ||||||||||||||||    
T  40613445 acgccgacaccgctaatattttgagaaaatcacataattcagtgtaattatatgtgtc 40613502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 63 - 107
Target Start/End: Original strand, 36635331 - 36635375
Alignment:
Q  63 ctaataattttagaaaatcagataattcaatgtaattatatgtgt 107  Q
    |||||||||| ||||||||| |||||||| |||||||||||||||    
T  36635331 ctaataatttgagaaaatcacataattcagtgtaattatatgtgt 36635375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 19482613 - 19482712
Alignment:
Q  1 tatgaaacacggatacagacacagataccagacacgacacagataccaatacgccgacattgctaataattttagaaaatcagataattcaatgtaatta 100  Q
    |||||| |||||||||  ||||||| ||||||||||||||||| ||  | |||||||||   |||||||||| | || |||| |||||||  ||||||||    
T  19482613 tatgaagcacggatacgaacacagacaccagacacgacacagacactgacacgccgacacaactaataatttgaaaatatcacataattcggtgtaatta 19482712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 107
Target Start/End: Original strand, 10013897 - 10013955
Alignment:
Q  49 atacgccgacattgctaataattttagaaaatcagataattcaatgtaattatatgtgt 107  Q
    ||||| ||| |||| ||||||||||| ||||| | |||||| |||||||||||||||||    
T  10013897 atacgtcgaaattgataataattttacaaaataatataatttaatgtaattatatgtgt 10013955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 107
Target Start/End: Original strand, 10021038 - 10021096
Alignment:
Q  49 atacgccgacattgctaataattttagaaaatcagataattcaatgtaattatatgtgt 107  Q
    ||||| ||| |||| ||||||||||| ||||| | |||||| |||||||||||||||||    
T  10021038 atacgtcgaaattgataataattttacaaaataatataatttaatgtaattatatgtgt 10021096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 106
Target Start/End: Complemental strand, 22440651 - 22440609
Alignment:
Q  64 taataattttagaaaatcagataattcaatgtaattatatgtg 106  Q
    ||||||||| ||||||||| |||||||| ||||||||||||||    
T  22440651 taataatttgagaaaatcacataattcagtgtaattatatgtg 22440609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 108
Target Start/End: Original strand, 33950142 - 33950188
Alignment:
Q  62 gctaataattttagaaaatcagataattcaatgtaattatatgtgtc 108  Q
    ||||||||||| ||||||||| |||||| |||||||| |||||||||    
T  33950142 gctaataatttgagaaaatcacataatttaatgtaatcatatgtgtc 33950188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 105
Target Start/End: Complemental strand, 49653024 - 49652982
Alignment:
Q  63 ctaataattttagaaaatcagataattcaatgtaattatatgt 105  Q
    |||||||||| |||||||||||||||||| | |||||||||||    
T  49653024 ctaataatttaagaaaatcagataattcagtataattatatgt 49652982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 64 - 105
Target Start/End: Original strand, 903930 - 903971
Alignment:
Q  64 taataattttagaaaatcagataattcaatgtaattatatgt 105  Q
    ||||||||| ||||||||| |||||||| |||||||||||||    
T  903930 taataatttgagaaaatcacataattcagtgtaattatatgt 903971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 55 - 108
Target Start/End: Complemental strand, 999408 - 999355
Alignment:
Q  55 cgacattgctaataattttagaaaatcagataattcaatgtaattatatgtgtc 108  Q
    |||||| ||||||||||| || |||||| |||||| | ||||||||||||||||    
T  999408 cgacatcgctaataatttgagtaaatcatataatttagtgtaattatatgtgtc 999355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 63 - 104
Target Start/End: Complemental strand, 7214574 - 7214533
Alignment:
Q  63 ctaataattttagaaaatcagataattcaatgtaattatatg 104  Q
    |||||||||| ||||||||| |||||| ||||||||||||||    
T  7214574 ctaataatttgagaaaatcacataatttaatgtaattatatg 7214533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 52 - 105
Target Start/End: Original strand, 7670680 - 7670733
Alignment:
Q  52 cgccgacattgctaataattttagaaaatcagataattcaatgtaattatatgt 105  Q
    ||||||||||||||||| ||| ||||||||| |||||||| | ||| |||||||    
T  7670680 cgccgacattgctaatagtttgagaaaatcacataattcagtataactatatgt 7670733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 56 - 101
Target Start/End: Original strand, 56257933 - 56257978
Alignment:
Q  56 gacattgctaataattttagaaaatcagataattcaatgtaattat 101  Q
    |||| |||||||||||| ||||||||| |||||||| |||||||||    
T  56257933 gacactgctaataatttgagaaaatcatataattcagtgtaattat 56257978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 108
Target Start/End: Complemental strand, 5775409 - 5775365
Alignment:
Q  64 taataattttagaaaatcagataattcaatgtaattatatgtgtc 108  Q
    ||||||||| ||||||||| |||||| | ||||||||||||||||    
T  5775409 taataatttgagaaaatcacataattaagtgtaattatatgtgtc 5775365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 102
Target Start/End: Complemental strand, 8423771 - 8423731
Alignment:
Q  62 gctaataattttagaaaatcagataattcaatgtaattata 102  Q
    ||||||||||| ||||||||| |||||||| ||||||||||    
T  8423771 gctaataatttgagaaaatcacataattcagtgtaattata 8423731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 107
Target Start/End: Original strand, 15029760 - 15029816
Alignment:
Q  51 acgccgacattgctaataattttagaaaatcagataattcaatgtaattatatgtgt 107  Q
    |||| |||| |||||||||||| | || |||| |||||||| |||||||||||||||    
T  15029760 acgcagacactgctaataatttgaaaatatcacataattcagtgtaattatatgtgt 15029816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 108
Target Start/End: Complemental strand, 18513292 - 18513248
Alignment:
Q  64 taataattttagaaaatcagataattcaatgtaattatatgtgtc 108  Q
    ||||||||| ||||||| | ||||||||||||||| |||||||||    
T  18513292 taataatttgagaaaatgacataattcaatgtaatcatatgtgtc 18513248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 108
Target Start/End: Complemental strand, 19230360 - 19230316
Alignment:
Q  64 taataattttagaaaatcagataattcaatgtaattatatgtgtc 108  Q
    ||||||||| ||||||| | ||||||||||||||||||| |||||    
T  19230360 taataatttgagaaaataacataattcaatgtaattataggtgtc 19230316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 108
Target Start/End: Complemental strand, 44081628 - 44081584
Alignment:
Q  64 taataattttagaaaatcagataattcaatgtaattatatgtgtc 108  Q
    ||||||||| | ||||||| |||||| ||||||||||||||||||    
T  44081628 taataatttgaaaaaatcatataatttaatgtaattatatgtgtc 44081584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 6e-21; HSPs: 30)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 7086740 - 7086847
Alignment:
Q  1 tatgaaacacggatacagacacagataccagacacgacacagataccaatacgccgacattgctaataattttagaaaatcagataattcaatgtaatta 100  Q
    |||||| || ||||||| ||||| ||||||||||||||||||| ||| | ||| || || |||||||||||| ||||||||| |||||| | ||||||||    
T  7086740 tatgaagcatggatacaaacacaaataccagacacgacacagacaccgacacgtcggcactgctaataatttgagaaaatcacataatttagtgtaatta 7086839  T
Q  101 tatgtgtc 108  Q
    ||||||||    
T  7086840 tatgtgtc 7086847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 8805686 - 8805586
Alignment:
Q  1 tatgaaacacggatacagacacagataccagacacgacacagataccaatacgccgacattgctaataattttagaaaatcagataattcaatgtaatta 100  Q
    |||||| || ||||||| ||||| | ||||||||||||||||| ||| | ||| || || |||||||||||| ||||||||| |||||| | ||||||||    
T  8805686 tatgaagcatggatacatacacaaacaccagacacgacacagacaccgacacgtcggcactgctaataatttgagaaaatcacataatttagtgtaatta 8805587  T
Q  101 t 101  Q
    |    
T  8805586 t 8805586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 32299220 - 32299327
Alignment:
Q  1 tatgaaacacggatacagacacagataccagacacgacacagataccaatacgccgacattgctaataattttagaaaatcagataattcaatgtaatta 100  Q
    |||||| |||||||||||||||||| ||||||||  ||||| ||||  | || || ||  || ||||||||| ||||||||| ||||||||||||| |||    
T  32299220 tatgaagcacggatacagacacagacaccagacataacacaaatactgacacaccaaccctgataataatttgagaaaatcacataattcaatgtagtta 32299319  T
Q  101 tatgtgtc 108  Q
    || |||||    
T  32299320 tacgtgtc 32299327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 62 - 108
Target Start/End: Complemental strand, 30866197 - 30866151
Alignment:
Q  62 gctaataattttagaaaatcagataattcaatgtaattatatgtgtc 108  Q
    ||||||||||| ||||||||| |||||||||||||||||||||||||    
T  30866197 gctaataatttgagaaaatcacataattcaatgtaattatatgtgtc 30866151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 51 - 108
Target Start/End: Original strand, 9629378 - 9629435
Alignment:
Q  51 acgccgacattgctaataattttagaaaatcagataattcaatgtaattatatgtgtc 108  Q
    |||||||||  || |||||||| ||||||||| |||||||||||||||||||||||||    
T  9629378 acgccgacaccgccaataatttgagaaaatcacataattcaatgtaattatatgtgtc 9629435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 51 - 108
Target Start/End: Original strand, 19040347 - 19040404
Alignment:
Q  51 acgccgacattgctaataattttagaaaatcagataattcaatgtaattatatgtgtc 108  Q
    |||||||||  ||||||||||| ||||||||| |||||||| ||||||||||||||||    
T  19040347 acgccgacaccgctaataatttgagaaaatcacataattcagtgtaattatatgtgtc 19040404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 51 - 108
Target Start/End: Complemental strand, 21924999 - 21924942
Alignment:
Q  51 acgccgacattgctaataattttagaaaatcagataattcaatgtaattatatgtgtc 108  Q
    ||||||||| |||||||||||| |||| |||| |||||||| ||||||||||||||||    
T  21924999 acgccgacactgctaataatttgagaatatcaaataattcagtgtaattatatgtgtc 21924942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 51 - 108
Target Start/End: Original strand, 26562684 - 26562741
Alignment:
Q  51 acgccgacattgctaataattttagaaaatcagataattcaatgtaattatatgtgtc 108  Q
    ||||||||| |||||| ||||| ||||||||| |||||||| ||||||||||||||||    
T  26562684 acgccgacactgctaaaaatttgagaaaatcacataattcagtgtaattatatgtgtc 26562741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 51 - 108
Target Start/End: Complemental strand, 33001353 - 33001296
Alignment:
Q  51 acgccgacattgctaataattttagaaaatcagataattcaatgtaattatatgtgtc 108  Q
    ||||||||| |||||||||||| | ||||||| |||||| ||||||||||||||||||    
T  33001353 acgccgacactgctaataatttgaaaaaatcacataattaaatgtaattatatgtgtc 33001296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 7377930 - 7378031
Alignment:
Q  1 tatgaaacacggatacagacacagataccagacacgacacagataccaatacgccgacattgctaataattttagaaaatcagataattcaatgtaatta 100  Q
    |||||| ||||||||| ||| |||| ||| ||||| ||||||| |||      ||||||  ||||| ||||| ||||||||| |||||||||||||||||    
T  7377930 tatgaagcacggatacggacccagacaccggacacaacacagacacc------ccgacaccgctaaaaatttgagaaaatcacataattcaatgtaatta 7378023  T
Q  101 tatgtgtc 108  Q
    ||||||||    
T  7378024 tatgtgtc 7378031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 56 - 108
Target Start/End: Complemental strand, 9025553 - 9025501
Alignment:
Q  56 gacattgctaataattttagaaaatcagataattcaatgtaattatatgtgtc 108  Q
    |||| |||||||||||| ||||||||| |||||||| ||||||||||||||||    
T  9025553 gacactgctaataatttgagaaaatcacataattcagtgtaattatatgtgtc 9025501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 64 - 108
Target Start/End: Original strand, 9617442 - 9617486
Alignment:
Q  64 taataattttagaaaatcagataattcaatgtaattatatgtgtc 108  Q
    ||||||||| ||||||||| |||||||||||||||||||||||||    
T  9617442 taataatttgagaaaatcacataattcaatgtaattatatgtgtc 9617486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 426628 - 426529
Alignment:
Q  1 tatgaaacacggatacagacacagataccagacacgacacagataccaatacgccgacattgctaataattttagaaaatcagataattcaatgtaatta 100  Q
    |||||| || |||||||||||| |||||| |||||||||| || ||  | |||||||||  | ||||||||| | ||||||| |||||| ||||||||||    
T  426628 tatgaagcatggatacagacacggataccggacacgacacggacactgacacgccgacacagttaataatttgaaaaaatcacataattaaatgtaatta 426529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 1681703 - 1681802
Alignment:
Q  1 tatgaaacacggatacagacacagataccagacacgacacagataccaatacgccgacattgctaataattttagaaaatcagataattcaatgtaatta 100  Q
    |||||| |||||||||||||||||| |||  |||||||||| | || || |||||||||   |||||||||| | |||||||  ||||||| ||||||||    
T  1681703 tatgaagcacggatacagacacagacaccgaacacgacacatacactaacacgccgacacaactaataatttgaaaaaatcacgtaattcagtgtaatta 1681802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 53 - 104
Target Start/End: Complemental strand, 7996440 - 7996389
Alignment:
Q  53 gccgacattgctaataattttagaaaatcagataattcaatgtaattatatg 104  Q
    ||||||| |||||||||||| ||||||||| |||||||| ||||||||||||    
T  7996440 gccgacactgctaataatttgagaaaatcatataattcagtgtaattatatg 7996389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 53 - 104
Target Start/End: Original strand, 8022361 - 8022412
Alignment:
Q  53 gccgacattgctaataattttagaaaatcagataattcaatgtaattatatg 104  Q
    ||||||| |||||||||||| ||||||||| |||||||| ||||||||||||    
T  8022361 gccgacactgctaataatttgagaaaatcatataattcagtgtaattatatg 8022412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 9107484 - 9107385
Alignment:
Q  1 tatgaaacacggatacagacacagataccagacacgacacagataccaatacgccgacattgctaataattttagaaaatcagataattcaatgtaatta 100  Q
    |||||| ||||||||| ||||| || ||| |||||||||| || || || |||||||||  ||||||||||| | ||||||| | |||||| ||||||||    
T  9107484 tatgaagcacggatactgacacggacaccggacacgacacggacactaacacgccgacacagctaataatttgaaaaaatcacaaaattcagtgtaatta 9107385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 108
Target Start/End: Original strand, 9658852 - 9658931
Alignment:
Q  29 cagacacgacacagataccaatacgccgacattgctaataattttagaaaatcagataattcaatgtaattatatgtgtc 108  Q
    |||||||||||| || ||  | |||||||||  ||||||||||| ||||||||| |||||||| ||||||||||| ||||    
T  9658852 cagacacgacacggacactgacacgccgacaccgctaataatttaagaaaatcacataattcagtgtaattatatttgtc 9658931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 51 - 147
Target Start/End: Complemental strand, 20371174 - 20371074
Alignment:
Q  51 acgccgacattgctaataattttagaaaatcagataattcaatgtaattatatgtgtccg----gaacatgtctaatccgagtagtgtatgtgcttcata 146  Q
    |||||||||  ||||||||||| ||||||||| |||| ||||||| |||||||||||| |    ||||| | |||||||||| ||||| ||| |||||||    
T  20371174 acgccgacaccgctaataatttgagaaaatcacataactcaatgtgattatatgtgtcggtgtcgaacaagcctaatccgaggagtgtctgttcttcata 20371075  T
Q  147 g 147  Q
    |    
T  20371074 g 20371074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 62 - 108
Target Start/End: Complemental strand, 7265646 - 7265600
Alignment:
Q  62 gctaataattttagaaaatcagataattcaatgtaattatatgtgtc 108  Q
    ||||||||||| ||||||||| |||||||| ||||||||||||||||    
T  7265646 gctaataatttgagaaaatcacataattcagtgtaattatatgtgtc 7265600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 51 - 108
Target Start/End: Original strand, 30851597 - 30851652
Alignment:
Q  51 acgccgacattgctaataattttagaaaatcagataattcaatgtaattatatgtgtc 108  Q
    ||||||||| |||||||||||| ||||||||  | |||||||||||||||||||||||    
T  30851597 acgccgacactgctaataatttaagaaaatc--acaattcaatgtaattatatgtgtc 30851652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 45 - 108
Target Start/End: Original strand, 6299501 - 6299564
Alignment:
Q  45 accaatacgccgacattgctaataattttagaaaatcagataattcaatgtaattatatgtgtc 108  Q
    ||||| |||||||||| | ||||||||| ||||||| | ||||||||||||||| ||| |||||    
T  6299501 accaacacgccgacatggataataatttgagaaaatgatataattcaatgtaatgataggtgtc 6299564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 45 - 108
Target Start/End: Original strand, 6306311 - 6306374
Alignment:
Q  45 accaatacgccgacattgctaataattttagaaaatcagataattcaatgtaattatatgtgtc 108  Q
    ||||| |||||||||| | ||||||||| ||||||| | ||||||||||||||| ||| |||||    
T  6306311 accaacacgccgacatggataataatttgagaaaatgatataattcaatgtaatgataggtgtc 6306374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 7938061 - 7938168
Alignment:
Q  1 tatgaaacacggatacagacacagataccagacacgacacagataccaatacgccgacattgctaataattttagaaaatcagataattcaatgtaatta 100  Q
    |||||| ||||||||| ||||| || ||| |||||||||  || ||  | |||||||||  ||||||||||| | ||||||| |||||| | ||||||||    
T  7938061 tatgaagcacggatacggacacggacaccggacacgacatggacactgacacgccgacacagctaataatttgaaaaaatcatataatttagtgtaatta 7938160  T
Q  101 tatgtgtc 108  Q
    || |||||    
T  7938161 taagtgtc 7938168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 9027123 - 9027230
Alignment:
Q  1 tatgaaacacggatacagacacagataccagacacgacacagataccaatacgccgacattgctaataattttagaaaatcagataattcaatgtaatta 100  Q
    |||||| ||| ||||| ||||| ||  || |||||||||| || ||  | |||||||||  ||||||||||| ||| ||||| |||||||  ||||||||    
T  9027123 tatgaagcaccgatacggacacggactccggacacgacacggacactgacacgccgacaccgctaataatttgagataatcacataattccgtgtaatta 9027222  T
Q  101 tatgtgtc 108  Q
    ||||||||    
T  9027223 tatgtgtc 9027230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 10294052 - 10294159
Alignment:
Q  1 tatgaaacacggatacagacacagataccagacacgacacagataccaatacgccgacattgctaataattttagaaaatcagataattcaatgtaatta 100  Q
    |||||| ||||||||| |||||  | ||| |||||||||| |||||  | | ||||| |  ||||||||||| ||| ||||  ||| |||||||||||||    
T  10294052 tatgaagcacggatacggacacgaacaccggacacgacacggatactgacatgccgataccgctaataatttgagataatcgcatatttcaatgtaatta 10294151  T
Q  101 tatgtgtc 108  Q
    ||||||||    
T  10294152 tatgtgtc 10294159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 78
Target Start/End: Original strand, 25207713 - 25207786
Alignment:
Q  5 aaacacggatacagacacagataccagacacgacacagataccaatacgccgacattgctaataattttagaaa 78  Q
    |||||||||||||||||  |||| ||||||| | ||  | |||||||||||||||  ||||||||||| |||||    
T  25207713 aaacacggatacagacaaggatatcagacacaaaacgaacaccaatacgccgacaccgctaataatttgagaaa 25207786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 62 - 107
Target Start/End: Complemental strand, 32511719 - 32511674
Alignment:
Q  62 gctaataattttagaaaatcagataattcaatgtaattatatgtgt 107  Q
    ||||||||||| ||||||||| |||||||| |||||||||| ||||    
T  32511719 gctaataatttaagaaaatcacataattcagtgtaattataagtgt 32511674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 108
Target Start/End: Complemental strand, 11591917 - 11591877
Alignment:
Q  68 aattttagaaaatcagataattcaatgtaattatatgtgtc 108  Q
    ||||| ||||||||| |||||||| ||||||||||||||||    
T  11591917 aatttgagaaaatcacataattcagtgtaattatatgtgtc 11591877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 107
Target Start/End: Original strand, 17168893 - 17168945
Alignment:
Q  55 cgacattgctaataattttagaaaatcagataattcaatgtaattatatgtgt 107  Q
    |||||||| ||||||||| | ||||| | |||||||||||||| |||||||||    
T  17168893 cgacattgataataatttgaaaaaatgacataattcaatgtaactatatgtgt 17168945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 4e-19; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 24 - 108
Target Start/End: Original strand, 19206018 - 19206102
Alignment:
Q  24 gataccagacacgacacagataccaatacgccgacattgctaataattttagaaaatcagataattcaatgtaattatatgtgtc 108  Q
    ||||||||||||||||| || ||||| |||||||||  ||||||||||| ||||||||| |||||||| | ||||||||||||||    
T  19206018 gataccagacacgacacggacaccaacacgccgacaccgctaataatttgagaaaatcacataattcattataattatatgtgtc 19206102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 17851376 - 17851483
Alignment:
Q  1 tatgaaacacggatacagacacagataccagacacgacacagataccaatacgccgacattgctaataattttagaaaatcagataattcaatgtaatta 100  Q
    |||||| ||||||||||||||| || ||| |||||||||  |||||| | ||  ||| |  ||||||||||||||||||||| |||||||| ||||||||    
T  17851376 tatgaagcacggatacagacacggacaccggacacgacatggataccgacacatcgataccgctaataattttagaaaatcacataattcagtgtaatta 17851475  T
Q  101 tatgtgtc 108  Q
    ||||||||    
T  17851476 tatgtgtc 17851483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 5956218 - 5956324
Alignment:
Q  1 tatgaaacacggatacagacacagataccagacacgacacagataccaatacgccgacattgctaataattttagaaaatcagataattcaatgtaatta 100  Q
    |||||| || ||||||||||| ||||| |||||||||||  |||||  | ||||||| | | |||||||||| | ||||||| |||||| ||||||||||    
T  5956218 tatgaagcatggatacagacatagataacagacacgacatggatactgacacgccgatactcctaataatttaaaaaaatcaaataatttaatgtaatta 5956317  T
Q  101 tatgtgt 107  Q
    |||||||    
T  5956318 tatgtgt 5956324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 54 - 108
Target Start/End: Original strand, 24146814 - 24146868
Alignment:
Q  54 ccgacattgctaataattttagaaaatcagataattcaatgtaattatatgtgtc 108  Q
    |||||| |||||||||||||||||||||| |||||||||| ||||||||||||||    
T  24146814 ccgacaatgctaataattttagaaaatcacataattcaatataattatatgtgtc 24146868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 26329496 - 26329389
Alignment:
Q  1 tatgaaacacggatacagacacagataccagacacgacacagataccaatacgccgacattgctaataattttagaaaatcagataattcaatgtaatta 100  Q
    |||||| |||| |||||||||| || ||  ||||||||||||| ||  | |||||||||| | ||||||||| |||||| || | |||||| ||||||||    
T  26329496 tatgaagcacgaatacagacacggacactggacacgacacagacactgacacgccgacatcgttaataatttgagaaaaacacacaattcagtgtaatta 26329397  T
Q  101 tatgtgtc 108  Q
    ||||||||    
T  26329396 tatgtgtc 26329389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 51 - 108
Target Start/End: Original strand, 32308115 - 32308172
Alignment:
Q  51 acgccgacattgctaataattttagaaaatcagataattcaatgtaattatatgtgtc 108  Q
    |||||||||  ||||||||||| ||||||||| |||||||| ||||||| ||||||||    
T  32308115 acgccgacaccgctaataatttgagaaaatcacataattcagtgtaattgtatgtgtc 32308172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 108
Target Start/End: Complemental strand, 3520393 - 3520349
Alignment:
Q  64 taataattttagaaaatcagataattcaatgtaattatatgtgtc 108  Q
    |||| |||| ||||||||| |||||||||||||||||||||||||    
T  3520393 taatcatttgagaaaatcatataattcaatgtaattatatgtgtc 3520349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 146
Target Start/End: Complemental strand, 21141095 - 21140951
Alignment:
Q  2 atgaaacacggatacagacacagataccagacacgacacagataccaatacgccgacattgctaataattttagaaaatcagataattcaatgtaattat 101  Q
    ||||| ||||||||| ||||| || |||  ||||||||| ||  || | ||| |||||   |||||||||| ||||||||| |||||||| ||| |||||    
T  21141095 atgaagcacggatacggacacggacaccgtacacgacacggacgccgacacgtcgacaccactaataatttaagaaaatcatataattcagtgtgattat 21140996  T
Q  102 atgtgtccggaacatgtctaatccgagtagtgtatgtgcttcata 146  Q
    | ||||| |   | |||||||||| || ||||| |||||||||||    
T  21140995 aggtgtcggagtcgtgtctaatccaagaagtgtttgtgcttcata 21140951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 100
Target Start/End: Original strand, 30813788 - 30813856
Alignment:
Q  32 acacgacacagataccaatacgccgacattgctaataattttagaaaatcagataattcaatgtaatta 100  Q
    |||||| ||||| ||  |||| ||||||||||||||||||| ||||||| | |||||||| ||||||||    
T  30813788 acacgagacagacactgatactccgacattgctaataatttgagaaaattacataattcagtgtaatta 30813856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 53 - 108
Target Start/End: Original strand, 5548673 - 5548728
Alignment:
Q  53 gccgacattgctaataattttagaaaatcagataattcaatgtaattatatgtgtc 108  Q
    |||||||  ||| ||||||| ||||||||| |||||||| ||||||||||||||||    
T  5548673 gccgacaccgctgataatttgagaaaatcaaataattcagtgtaattatatgtgtc 5548728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 108
Target Start/End: Original strand, 9482932 - 9482986
Alignment:
Q  54 ccgacattgctaataattttagaaaatcagataattcaatgtaattatatgtgtc 108  Q
    ||||||| ||| ||||||| ||||||||| | |||||| ||||||||||||||||    
T  9482932 ccgacatcgctgataatttgagaaaatcacacaattcagtgtaattatatgtgtc 9482986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 108
Target Start/End: Original strand, 20549797 - 20549843
Alignment:
Q  62 gctaataattttagaaaatcagataattcaatgtaattatatgtgtc 108  Q
    ||||||||||| |||||||||  ||||||| ||||||||||||||||    
T  20549797 gctaataatttgagaaaatcacgtaattcagtgtaattatatgtgtc 20549843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 101
Target Start/End: Complemental strand, 29787433 - 29787383
Alignment:
Q  51 acgccgacattgctaataattttagaaaatcagataattcaatgtaattat 101  Q
    |||||||||  ||||||||||| ||||||||| |||||||| |||||||||    
T  29787433 acgccgacaccgctaataatttgagaaaatcacataattcagtgtaattat 29787383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 108
Target Start/End: Complemental strand, 42720943 - 42720897
Alignment:
Q  62 gctaataattttagaaaatcagataattcaatgtaattatatgtgtc 108  Q
    ||||||||||| | ||||||| |||||| ||||||||||||||||||    
T  42720943 gctaataatttgaaaaaatcacataattaaatgtaattatatgtgtc 42720897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 51 - 108
Target Start/End: Original strand, 2948678 - 2948735
Alignment:
Q  51 acgccgacattgctaataattttagaaaatcagataattcaatgtaattatatgtgtc 108  Q
    |||||||||  ||| |||||||||||||||||  ||||| | ||||||||||||||||    
T  2948678 acgccgacaccgctgataattttagaaaatcacgtaatttagtgtaattatatgtgtc 2948735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 51 - 108
Target Start/End: Original strand, 22484020 - 22484077
Alignment:
Q  51 acgccgacattgctaataattttagaaaatcagataattcaatgtaattatatgtgtc 108  Q
    |||||||||  |||||||||||||||||||   |||||||| | ||||||||||||||    
T  22484020 acgccgacaccgctaataattttagaaaattgcataattcagtataattatatgtgtc 22484077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 63 - 108
Target Start/End: Original strand, 22868049 - 22868094
Alignment:
Q  63 ctaataattttagaaaatcagataattcaatgtaattatatgtgtc 108  Q
    |||||||| | ||||||||| |||||||| ||||||||||||||||    
T  22868049 ctaataatatgagaaaatcacataattcagtgtaattatatgtgtc 22868094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 108
Target Start/End: Complemental strand, 7328774 - 7328698
Alignment:
Q  32 acacgacacagataccaatacgccgacattgctaataattttagaaaatcagataattcaatgtaattatatgtgtc 108  Q
    |||||||||||| |  || ||| ||| | |||||||||||| ||||||| | |||||| | ||||||||||||||||    
T  7328774 acacgacacagacattaacacgtcgatactgctaataatttgagaaaataacataatttagtgtaattatatgtgtc 7328698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 108
Target Start/End: Complemental strand, 8239101 - 8239057
Alignment:
Q  64 taataattttagaaaatcagataattcaatgtaattatatgtgtc 108  Q
    ||||||||| ||||||||  |||||||| ||||||||||||||||    
T  8239101 taataatttaagaaaatcttataattcagtgtaattatatgtgtc 8239057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 108
Target Start/End: Original strand, 12278843 - 12278887
Alignment:
Q  64 taataattttagaaaatcagataattcaatgtaattatatgtgtc 108  Q
    ||||||||| ||||||| | |||||||| ||||||||||||||||    
T  12278843 taataatttaagaaaatgacataattcagtgtaattatatgtgtc 12278887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 105
Target Start/End: Original strand, 23191889 - 23191945
Alignment:
Q  49 atacgccgacattgctaataattttagaaaatcagataattcaatgtaattatatgt 105  Q
    |||||||||||  ||||||||||| ||||||||| ||| |||| |||||||| ||||    
T  23191889 atacgccgacaccgctaataatttgagaaaatcacatatttcagtgtaattacatgt 23191945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 108
Target Start/End: Complemental strand, 27732290 - 27732246
Alignment:
Q  64 taataattttagaaaatcagataattcaatgtaattatatgtgtc 108  Q
    ||||||||| ||||||| | |||||||| ||||||||||||||||    
T  27732290 taataatttaagaaaattacataattcagtgtaattatatgtgtc 27732246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 108
Target Start/End: Complemental strand, 38134457 - 38134413
Alignment:
Q  64 taataattttagaaaatcagataattcaatgtaattatatgtgtc 108  Q
    ||||||||| ||||||| | ||||||||||||||| |||||||||    
T  38134457 taataatttgagaaaatgacataattcaatgtaatcatatgtgtc 38134413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 2e-17; HSPs: 27)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 31 - 108
Target Start/End: Original strand, 27213522 - 27213599
Alignment:
Q  31 gacacgacacagataccaatacgccgacattgctaataattttagaaaatcagataattcaatgtaattatatgtgtc 108  Q
    |||||||||| |||||  | ||||||||| |||||||||||| ||||||||| |||||||| ||||||||||||||||    
T  27213522 gacacgacacggatacagacacgccgacactgctaataatttcagaaaatcacataattcactgtaattatatgtgtc 27213599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 51 - 108
Target Start/End: Complemental strand, 31236641 - 31236584
Alignment:
Q  51 acgccgacattgctaataattttagaaaatcagataattcaatgtaattatatgtgtc 108  Q
    ||||||||| |||||||||||| ||||||||| |||||||||||||||||||||||||    
T  31236641 acgccgacactgctaataatttgagaaaatcacataattcaatgtaattatatgtgtc 31236584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 27 - 108
Target Start/End: Complemental strand, 11927174 - 11927093
Alignment:
Q  27 accagacacgacacagataccaatacgccgacattgctaataattttagaaaatcagataattcaatgtaattatatgtgtc 108  Q
    |||| ||||||||| ||| | |||||||||||| || ||||||||| | ||||||| |||||||| ||||||||||||||||    
T  11927174 accaaacacgacacggatgctaatacgccgacactgttaataatttgataaaatcacataattcagtgtaattatatgtgtc 11927093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 55 - 108
Target Start/End: Complemental strand, 12606889 - 12606836
Alignment:
Q  55 cgacattgctaataattttagaaaatcagataattcaatgtaattatatgtgtc 108  Q
    ||||| |||||||||||| ||||||||| |||||||||||||||||||||||||    
T  12606889 cgacactgctaataatttgagaaaatcatataattcaatgtaattatatgtgtc 12606836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 24362316 - 24362209
Alignment:
Q  1 tatgaaacacggatacagacacagataccagacacgacacagataccaatacgccgacattgctaataattttagaaaatcagataattcaatgtaatta 100  Q
    |||||| ||| ||||| || || || ||| || |||||||||| ||| | |||||||||  ||||||||||| ||| ||||| |||||||| ||||||||    
T  24362316 tatgaagcacagatacggatacggacaccggatacgacacagacaccgacacgccgacaccgctaataatttgagagaatcacataattcagtgtaatta 24362217  T
Q  101 tatgtgtc 108  Q
    ||||||||    
T  24362216 tatgtgtc 24362209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 11803204 - 11803310
Alignment:
Q  1 tatgaaacacggatacagacacagataccagacacgacacagataccaatacgccgacattgctaataattttagaaaatcagataattcaatgtaatta 100  Q
    ||||||||||| ||||||||||  | |||| |||||||||  | ||  |||| | |||| || ||||||||| ||||||||| |||||||| ||||||||    
T  11803204 tatgaaacacgaatacagacacgaacaccaaacacgacacgaacactgatacactgacactgttaataatttaagaaaatcacataattcagtgtaatta 11803303  T
Q  101 tatgtgt 107  Q
    |||||||    
T  11803304 tatgtgt 11803310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 51 - 108
Target Start/End: Complemental strand, 13844660 - 13844603
Alignment:
Q  51 acgccgacattgctaataattttagaaaatcagataattcaatgtaattatatgtgtc 108  Q
    ||||||||| |||||||||||| ||||||||| |||||| | ||||||||||||||||    
T  13844660 acgccgacactgctaataatttgagaaaatcacataattgagtgtaattatatgtgtc 13844603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 58 - 108
Target Start/End: Original strand, 3025553 - 3025603
Alignment:
Q  58 cattgctaataattttagaaaatcagataattcaatgtaattatatgtgtc 108  Q
    ||||||||||||||| ||||||||| |||||||| |||||||||| |||||    
T  3025553 cattgctaataatttgagaaaatcacataattcagtgtaattataggtgtc 3025603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 70 - 108
Target Start/End: Original strand, 18964191 - 18964229
Alignment:
Q  70 ttttagaaaatcagataattcaatgtaattatatgtgtc 108  Q
    ||||||||||||| |||||||||||||||||||||||||    
T  18964191 ttttagaaaatcacataattcaatgtaattatatgtgtc 18964229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 62 - 108
Target Start/End: Original strand, 34897091 - 34897137
Alignment:
Q  62 gctaataattttagaaaatcagataattcaatgtaattatatgtgtc 108  Q
    ||||||||||| ||||||||| |||||||| ||||||||||||||||    
T  34897091 gctaataatttgagaaaatcacataattcagtgtaattatatgtgtc 34897137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 31 - 100
Target Start/End: Complemental strand, 4298970 - 4298901
Alignment:
Q  31 gacacgacacagataccaatacgccgacattgctaataattttagaaaatcagataattcaatgtaatta 100  Q
    |||||||||||||||| || |||||||||  | ||||||||| | ||||||| |||||| ||||||||||    
T  4298970 gacacgacacagatactaacacgccgacacagttaataatttgaaaaaatcacataatttaatgtaatta 4298901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 27 - 108
Target Start/End: Original strand, 11944636 - 11944717
Alignment:
Q  27 accagacacgacacagataccaatacgccgacattgctaataattttagaaaatcagataattcaatgtaattatatgtgtc 108  Q
    |||| ||||||||| ||| | || ||||||||| || ||||||||| | ||||||| |||| ||| ||||||||||||||||    
T  11944636 accaaacacgacacggatgctaacacgccgacactgttaataatttgataaaatcacataactcagtgtaattatatgtgtc 11944717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 108
Target Start/End: Complemental strand, 4786389 - 4786345
Alignment:
Q  64 taataattttagaaaatcagataattcaatgtaattatatgtgtc 108  Q
    ||||||||| ||||||||| |||||||| ||||||||||||||||    
T  4786389 taataatttaagaaaatcacataattcagtgtaattatatgtgtc 4786345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 56 - 107
Target Start/End: Original strand, 14731712 - 14731763
Alignment:
Q  56 gacattgctaataattttagaaaatcagataattcaatgtaattatatgtgt 107  Q
    |||| |||||||||||| ||||||||| |||||| | |||||||||||||||    
T  14731712 gacactgctaataatttgagaaaatcacataatttagtgtaattatatgtgt 14731763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 100
Target Start/End: Original strand, 22651929 - 22652020
Alignment:
Q  9 acggatacagacacagataccagacacgacacagataccaatacgccgacattgctaataattttagaaaatcagataattcaatgtaatta 100  Q
    |||||||| ||||| || ||| |||||||||| || ||  | |||||||||  ||||||||||| | ||||||| |||||||||| ||||||    
T  22651929 acggatacggacactgacaccggacacgacacggacactgacacgccgacacagctaataatttgaaaaaatcacataattcaatataatta 22652020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 51 - 106
Target Start/End: Complemental strand, 39954343 - 39954288
Alignment:
Q  51 acgccgacattgctaataattttagaaaatcagataattcaatgtaattatatgtg 106  Q
    |||||||||  ||||||||||| ||||||||| |||||| | ||||||||||||||    
T  39954343 acgccgacaccgctaataatttgagaaaatcacataatttagtgtaattatatgtg 39954288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 110
Target Start/End: Complemental strand, 8798882 - 8798836
Alignment:
Q  64 taataattttagaaaatcagataattcaatgtaattatatgtgtccg 110  Q
    ||||||||| ||||||| | |||||||||| ||||||||||||||||    
T  8798882 taataatttgagaaaataacataattcaatataattatatgtgtccg 8798836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 108
Target Start/End: Complemental strand, 20785518 - 20785472
Alignment:
Q  62 gctaataattttagaaaatcagataattcaatgtaattatatgtgtc 108  Q
    ||||||||||| || |||||| |||||| ||||||||||||||||||    
T  20785518 gctaataatttgaggaaatcacataatttaatgtaattatatgtgtc 20785472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 108
Target Start/End: Complemental strand, 28747480 - 28747442
Alignment:
Q  70 ttttagaaaatcagataattcaatgtaattatatgtgtc 108  Q
    |||||||||||||||||  ||||||||||||||||||||    
T  28747480 ttttagaaaatcagatagctcaatgtaattatatgtgtc 28747442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 36934615 - 36934721
Alignment:
Q  1 tatgaaacacggatacagacacagataccagacacgacacagataccaatacgccgacattgctaataattttagaaaatcagataattcaatgtaatta 100  Q
    |||||| || |||||| || ||| | |||| ||||||||| || || || ||| |||||  ||||||||||  | ||||||| |||||||| ||||||||    
T  36934615 tatgaagcatggatacggatacaaacaccaaacacgacacggacactaacacgtcgacaccgctaataattcgaaaaaatcacataattcattgtaatta 36934714  T
Q  101 tatgtgt 107  Q
    |||||||    
T  36934715 tatgtgt 36934721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 64 - 105
Target Start/End: Original strand, 3677794 - 3677835
Alignment:
Q  64 taataattttagaaaatcagataattcaatgtaattatatgt 105  Q
    ||||||||||| ||||||| ||||||| ||||||||||||||    
T  3677794 taataattttaaaaaatcacataattctatgtaattatatgt 3677835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 31 - 108
Target Start/End: Complemental strand, 12570592 - 12570515
Alignment:
Q  31 gacacgacacagataccaatacgccgacattgctaataattttagaaaatcagataattcaatgtaattatatgtgtc 108  Q
    ||||||| ||||| ||| | |||  |||| |||||||||||| |||||| || |||||| | ||||||||||||||||    
T  12570592 gacacgatacagacaccgacacgttgacactgctaataatttaagaaaaacacataattaagtgtaattatatgtgtc 12570515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 63 - 108
Target Start/End: Original strand, 14134706 - 14134751
Alignment:
Q  63 ctaataattttagaaaatcagataattcaatgtaattatatgtgtc 108  Q
    |||||||||| ||||||||| |||||||| ||||||||||| ||||    
T  14134706 ctaataatttgagaaaatcacataattcagtgtaattatatatgtc 14134751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 64 - 105
Target Start/End: Complemental strand, 34201097 - 34201056
Alignment:
Q  64 taataattttagaaaatcagataattcaatgtaattatatgt 105  Q
    ||||||||| ||||||| | ||||||||||||||||||||||    
T  34201097 taataatttgagaaaatgacataattcaatgtaattatatgt 34201056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 108
Target Start/End: Original strand, 7658411 - 7658515
Alignment:
Q  4 gaaacacggatacagacacagataccagacacgacacagataccaatacgccgacattgctaataattttagaaaatcagataattcaatgtaattatat 103  Q
    |||||||| |||| ||||| || | | || || ||||||| | | |||||||||||   |||||||||| ||||||| | |||||||| |||||||||||    
T  7658411 gaaacacgaatacggacacggacatcggatacaacacagacatcgatacgccgacaccactaataatttgagaaaattacataattcagtgtaattatat 7658510  T
Q  104 gtgtc 108  Q
     ||||    
T  7658511 ttgtc 7658515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 108
Target Start/End: Original strand, 12985400 - 12985444
Alignment:
Q  64 taataattttagaaaatcagataattcaatgtaattatatgtgtc 108  Q
    ||||||||| ||||||||| ||||||||||||||| |||| ||||    
T  12985400 taataatttgagaaaatcacataattcaatgtaatcatatatgtc 12985444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 101
Target Start/End: Complemental strand, 24017500 - 24017452
Alignment:
Q  53 gccgacattgctaataattttagaaaatcagataattcaatgtaattat 101  Q
    ||||||||  |||||||||| ||| ||||| ||||||||||||||||||    
T  24017500 gccgacatcactaataatttgagacaatcatataattcaatgtaattat 24017452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 27)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 2 - 107
Target Start/End: Original strand, 21616708 - 21616813
Alignment:
Q  2 atgaaacacggatacagacacagataccagacacgacacagataccaatacgccgacattgctaataattttagaaaatcagataattcaatgtaattat 101  Q
    ||||| ||||||||| |||||||| ||  |||||||||| || ||  | |||||||||  ||||||||||| ||||||||| |||||||| |||||||||    
T  21616708 atgaagcacggatacggacacagacacatgacacgacacggacacggacacgccgacaccgctaataatttgagaaaatcacataattcagtgtaattat 21616807  T
Q  102 atgtgt 107  Q
    ||||||    
T  21616808 atgtgt 21616813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 18276466 - 18276573
Alignment:
Q  1 tatgaaacacggatacagacacagataccagacacgacacagataccaatacgccgacattgctaataattttagaaaatcagataattcaatgtaatta 100  Q
    |||||| ||||||||||||||| || ||| ||||||| ||||| ||  ||| |||||||  ||||||||||| |||||||||  ||||||| ||||||||    
T  18276466 tatgaagcacggatacagacacggacaccggacacgatacagacactgatatgccgacaccgctaataatttgagaaaatcacttaattcagtgtaatta 18276565  T
Q  101 tatgtgtc 108  Q
    | ||||||    
T  18276566 tgtgtgtc 18276573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 32 - 108
Target Start/End: Complemental strand, 10535842 - 10535766
Alignment:
Q  32 acacgacacagataccaatacgccgacattgctaataattttagaaaatcagataattcaatgtaattatatgtgtc 108  Q
    ||||||||||||||| ||||||||||||  | ||||||||| ||||||| | |||||||| |||||| ||| |||||    
T  10535842 acacgacacagatactaatacgccgacaccgataataatttgagaaaatgacataattcagtgtaatcataagtgtc 10535766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 31 - 101
Target Start/End: Complemental strand, 21782902 - 21782832
Alignment:
Q  31 gacacgacacagataccaatacgccgacattgctaataattttagaaaatcagataattcaatgtaattat 101  Q
    ||||||||||| | ||  | ||||||||| |||||||||||| ||||||||| |||||||| |||||||||    
T  21782902 gacacgacacaaacactgacacgccgacactgctaataatttgagaaaatcacataattcagtgtaattat 21782832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 51 - 108
Target Start/End: Original strand, 896206 - 896263
Alignment:
Q  51 acgccgacattgctaataattttagaaaatcagataattcaatgtaattatatgtgtc 108  Q
    ||||||||| |||||||| ||| ||||||||| ||| ||||||||||| |||||||||    
T  896206 acgccgacactgctaatagtttgagaaaatcacatatttcaatgtaatcatatgtgtc 896263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 51 - 108
Target Start/End: Complemental strand, 18420498 - 18420441
Alignment:
Q  51 acgccgacattgctaataattttagaaaatcagataattcaatgtaattatatgtgtc 108  Q
    ||||| ||| |||||||||||| ||||||||| ||||||||||| ||||||| |||||    
T  18420498 acgccaacactgctaataatttgagaaaatcacataattcaatgcaattataagtgtc 18420441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 63 - 106
Target Start/End: Complemental strand, 2665940 - 2665897
Alignment:
Q  63 ctaataattttagaaaatcagataattcaatgtaattatatgtg 106  Q
    |||||||||||||||||||| |||||| | ||||||||||||||    
T  2665940 ctaataattttagaaaatcacataatttagtgtaattatatgtg 2665897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 108
Target Start/End: Original strand, 24011006 - 24011088
Alignment:
Q  25 ataccagacacgacacagataccaatacgccgacattgctaataattttagaaaatcagataattcaatgtaattatatgtgtc 108  Q
    ||||| ||||||||||| | ||||| |||||||||||| ||||||||| ||||||| | |||||| | |||||| ||| |||||    
T  24011006 ataccggacacgacacaaacaccaa-acgccgacattgataataatttgagaaaatgacataatttagtgtaatcataggtgtc 24011088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 53 - 108
Target Start/End: Complemental strand, 37411306 - 37411251
Alignment:
Q  53 gccgacattgctaataattttagaaaatcagataattcaatgtaattatatgtgtc 108  Q
    |||||||  ||||||||||| ||||||||| |||||||| ||| ||||||||||||    
T  37411306 gccgacaccgctaataatttgagaaaatcacataattcagtgtgattatatgtgtc 37411251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 101
Target Start/End: Original strand, 4332901 - 4332971
Alignment:
Q  31 gacacgacacagataccaatacgccgacattgctaataattttagaaaatcagataattcaatgtaattat 101  Q
    |||||| |||||||||  | | ||||||| || |||||||||  |||||||| ||||||||||||||||||    
T  4332901 gacacggcacagatacttacatgccgacactgataataatttgggaaaatcacataattcaatgtaattat 4332971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 108
Target Start/End: Complemental strand, 20242772 - 20242734
Alignment:
Q  70 ttttagaaaatcagataattcaatgtaattatatgtgtc 108  Q
    ||||||||||||| |||||||| ||||||||||||||||    
T  20242772 ttttagaaaatcacataattcagtgtaattatatgtgtc 20242734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 108
Target Start/End: Original strand, 23718032 - 23718078
Alignment:
Q  62 gctaataattttagaaaatcagataattcaatgtaattatatgtgtc 108  Q
    ||||||||||| ||||| ||| |||||||| ||||||||||||||||    
T  23718032 gctaataatttgagaaagtcacataattcagtgtaattatatgtgtc 23718078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 108
Target Start/End: Original strand, 24105704 - 24105750
Alignment:
Q  62 gctaataattttagaaaatcagataattcaatgtaattatatgtgtc 108  Q
    ||||||||||| ||||| ||| |||||||| ||||||||||||||||    
T  24105704 gctaataatttgagaaagtcacataattcagtgtaattatatgtgtc 24105750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 96
Target Start/End: Original strand, 27084260 - 27084302
Alignment:
Q  54 ccgacattgctaataattttagaaaatcagataattcaatgta 96  Q
    |||||| |||||||||||| ||||||||| |||||||||||||    
T  27084260 ccgacactgctaataatttgagaaaatcatataattcaatgta 27084302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 105
Target Start/End: Original strand, 28677904 - 28677958
Alignment:
Q  51 acgccgacattgctaataattttagaaaatcagataattcaatgtaattatatgt 105  Q
    |||||||||  ||||||||||| | ||||||| |||||||| |||||||||||||    
T  28677904 acgccgacaccgctaataatttgaaaaaatcacataattcagtgtaattatatgt 28677958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 101
Target Start/End: Original strand, 31284043 - 31284093
Alignment:
Q  51 acgccgacattgctaataattttagaaaatcagataattcaatgtaattat 101  Q
    ||||||||| |||||||||||| ||||||||| ||||| || |||||||||    
T  31284043 acgccgacactgctaataatttgagaaaatcacataatccattgtaattat 31284093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 108
Target Start/End: Original strand, 31808083 - 31808129
Alignment:
Q  62 gctaataattttagaaaatcagataattcaatgtaattatatgtgtc 108  Q
    ||||||||||| | ||||||| |||||||| ||||||||||||||||    
T  31808083 gctaataatttaacaaaatcacataattcagtgtaattatatgtgtc 31808129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 108
Target Start/End: Complemental strand, 34691858 - 34691812
Alignment:
Q  62 gctaataattttagaaaatcagataattcaatgtaattatatgtgtc 108  Q
    ||||||||||| | ||||||| |||||||| ||||||||||||||||    
T  34691858 gctaataatttgataaaatcatataattcagtgtaattatatgtgtc 34691812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 108
Target Start/End: Complemental strand, 34714270 - 34714224
Alignment:
Q  62 gctaataattttagaaaatcagataattcaatgtaattatatgtgtc 108  Q
    ||||||||||| | ||||||| |||||||| ||||||||||||||||    
T  34714270 gctaataatttgataaaatcatataattcagtgtaattatatgtgtc 34714224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 108
Target Start/End: Original strand, 44860326 - 44860372
Alignment:
Q  62 gctaataattttagaaaatcagataattcaatgtaattatatgtgtc 108  Q
    ||||||||||| ||||||||  |||||||| ||||||||||||||||    
T  44860326 gctaataatttgagaaaatcgcataattcagtgtaattatatgtgtc 44860372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 63 - 108
Target Start/End: Original strand, 5367199 - 5367244
Alignment:
Q  63 ctaataattttagaaaatcagataattcaatgtaattatatgtgtc 108  Q
    |||||||||| || |||||| |||||||| ||||||||||||||||    
T  5367199 ctaataatttgaggaaatcacataattcagtgtaattatatgtgtc 5367244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 63 - 108
Target Start/End: Original strand, 30471045 - 30471090
Alignment:
Q  63 ctaataattttagaaaatcagataattcaatgtaattatatgtgtc 108  Q
    |||||| ||| ||||||||| ||||||| |||||||||||||||||    
T  30471045 ctaatattttgagaaaatcacataattcgatgtaattatatgtgtc 30471090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 108
Target Start/End: Original strand, 18570980 - 18571024
Alignment:
Q  64 taataattttagaaaatcagataattcaatgtaattatatgtgtc 108  Q
    ||||||||| ||||||| | ||||||||||||||| |||||||||    
T  18570980 taataatttgagaaaatgacataattcaatgtaatcatatgtgtc 18571024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 108
Target Start/End: Complemental strand, 30527646 - 30527602
Alignment:
Q  64 taataattttagaaaatcagataattcaatgtaattatatgtgtc 108  Q
    ||||||||| ||||||||| |||||| | ||||||||||||||||    
T  30527646 taataatttgagaaaatcatataatttagtgtaattatatgtgtc 30527602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 108
Target Start/End: Original strand, 35449521 - 35449565
Alignment:
Q  64 taataattttagaaaatcagataattcaatgtaattatatgtgtc 108  Q
    ||||||||| ||||||||| | |||||| ||||||||||||||||    
T  35449521 taataatttgagaaaatcacagaattcagtgtaattatatgtgtc 35449565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 108
Target Start/End: Original strand, 39279683 - 39279727
Alignment:
Q  64 taataattttagaaaatcagataattcaatgtaattatatgtgtc 108  Q
    ||||||| | ||||||||| |||||||| ||||||||||||||||    
T  39279683 taataatatgagaaaatcaaataattcagtgtaattatatgtgtc 39279727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 108
Target Start/End: Complemental strand, 44605190 - 44605146
Alignment:
Q  64 taataattttagaaaatcagataattcaatgtaattatatgtgtc 108  Q
    ||||||||| ||||||| | ||||||||||||||||| |||||||    
T  44605190 taataatttgagaaaataacataattcaatgtaattacatgtgtc 44605146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 4e-16; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 9 - 108
Target Start/End: Original strand, 25093455 - 25093554
Alignment:
Q  9 acggatacagacacagataccagacacgacacagataccaatacgccgacattgctaataattttagaaaatcagataattcaatgtaattatatgtgtc 108  Q
    ||||||||| ||||||| ||| |||||||||| || || || ||||||||| || |||| |||| ||||||||| | |||||| ||||||||||||||||    
T  25093455 acggatacaaacacagacaccggacacgacactgacactaacacgccgacactgttaatgatttgagaaaatcacacaattcagtgtaattatatgtgtc 25093554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 56 - 104
Target Start/End: Original strand, 9624641 - 9624689
Alignment:
Q  56 gacattgctaataattttagaaaatcagataattcaatgtaattatatg 104  Q
    |||| |||||||||||| ||||||||| |||||||||||||||||||||    
T  9624641 gacactgctaataatttgagaaaatcacataattcaatgtaattatatg 9624689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 70 - 108
Target Start/End: Original strand, 13414483 - 13414521
Alignment:
Q  70 ttttagaaaatcagataattcaatgtaattatatgtgtc 108  Q
    ||||||||||||| |||||||||||||||||||||||||    
T  13414483 ttttagaaaatcaaataattcaatgtaattatatgtgtc 13414521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 70 - 108
Target Start/End: Original strand, 35222952 - 35222990
Alignment:
Q  70 ttttagaaaatcagataattcaatgtaattatatgtgtc 108  Q
    ||||||||||||| |||||||||||||||||||||||||    
T  35222952 ttttagaaaatcacataattcaatgtaattatatgtgtc 35222990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 51 - 108
Target Start/End: Original strand, 8383252 - 8383309
Alignment:
Q  51 acgccgacattgctaataattttagaaaatcagataattcaatgtaattatatgtgtc 108  Q
    |||||||||  ||||||||||| ||||||||| |||||||| |||||||||| |||||    
T  8383252 acgccgacaccgctaataatttgagaaaatcatataattcagtgtaattataagtgtc 8383309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 56 - 101
Target Start/End: Original strand, 11251978 - 11252023
Alignment:
Q  56 gacattgctaataattttagaaaatcagataattcaatgtaattat 101  Q
    ||||||||||||||||| ||||||||| |||||||| |||||||||    
T  11251978 gacattgctaataatttgagaaaatcacataattcagtgtaattat 11252023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 54 - 107
Target Start/End: Complemental strand, 11313861 - 11313808
Alignment:
Q  54 ccgacattgctaataattttagaaaatcagataattcaatgtaattatatgtgt 107  Q
    |||||| |||||||||||| ||||||||| |||||| | |||||||||||||||    
T  11313861 ccgacactgctaataatttgagaaaatcacataatttagtgtaattatatgtgt 11313808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 65 - 108
Target Start/End: Complemental strand, 8930880 - 8930837
Alignment:
Q  65 aataattttagaaaatcagataattcaatgtaattatatgtgtc 108  Q
    |||||||||| ||||||| ||||||| |||||||||||||||||    
T  8930880 aataattttaaaaaatcacataattcgatgtaattatatgtgtc 8930837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 49 - 108
Target Start/End: Original strand, 9789111 - 9789170
Alignment:
Q  49 atacgccgacattgctaataattttagaaaatcagataattcaatgtaattatatgtgtc 108  Q
    ||||| ||| |||| ||||||||||| ||||| | |||||| ||||||||||||||||||    
T  9789111 atacgtcgaaattgataataattttataaaataatataatttaatgtaattatatgtgtc 9789170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 34307894 - 34307787
Alignment:
Q  1 tatgaaacacggatacagacacagataccagacacgacacagataccaatacgccgacattgctaataattttagaaaatcagataattcaatgtaatta 100  Q
    |||||| || |||||| |||||  | ||| |||| |||||||| || || |||| ||||  ||||||||||| ||||||||| ||| |||| ||||||||    
T  34307894 tatgaagcatggatacggacacgaacaccggacatgacacagacacgaacacgctgacaccgctaataatttgagaaaatcacatatttcagtgtaatta 34307795  T
Q  101 tatgtgtc 108  Q
    || |||||    
T  34307794 taagtgtc 34307787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 107
Target Start/End: Complemental strand, 3587399 - 3587341
Alignment:
Q  49 atacgccgacattgctaataattttagaaaatcagataattcaatgtaattatatgtgt 107  Q
    ||||| ||| |||| ||||||||||| ||||| | |||||| |||||||||||||||||    
T  3587399 atacgtcgaaattgataataattttacaaaataatataatttaatgtaattatatgtgt 3587341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 97
Target Start/End: Original strand, 5339103 - 5339149
Alignment:
Q  51 acgccgacattgctaataattttagaaaatcagataattcaatgtaa 97  Q
    |||||||||||| ||||||||| ||||||||| |||||| |||||||    
T  5339103 acgccgacattgttaataatttgagaaaatcacataatttaatgtaa 5339149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 108
Target Start/End: Original strand, 7928456 - 7928502
Alignment:
Q  62 gctaataattttagaaaatcagataattcaatgtaattatatgtgtc 108  Q
    ||||||||||| | ||||||| |||||||| ||||||||||||||||    
T  7928456 gctaataatttgaaaaaatcacataattcagtgtaattatatgtgtc 7928502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 108
Target Start/End: Complemental strand, 8039888 - 8039842
Alignment:
Q  62 gctaataattttagaaaatcagataattcaatgtaattatatgtgtc 108  Q
    ||||||||||| ||||||| | |||||||| ||||||||||||||||    
T  8039888 gctaataatttgagaaaattatataattcagtgtaattatatgtgtc 8039842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 147
Target Start/End: Complemental strand, 27277814 - 27277780
Alignment:
Q  113 acatgtctaatccgagtagtgtatgtgcttcatag 147  Q
    |||||||||||||||| ||||||||||||||||||    
T  27277814 acatgtctaatccgaggagtgtatgtgcttcatag 27277780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 108
Target Start/End: Original strand, 38731224 - 38731270
Alignment:
Q  62 gctaataattttagaaaatcagataattcaatgtaattatatgtgtc 108  Q
    ||||||||||||| ||||||| |||||||| |||| |||||||||||    
T  38731224 gctaataattttaaaaaatcacataattcagtgtagttatatgtgtc 38731270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 108
Target Start/End: Complemental strand, 49505207 - 49505161
Alignment:
Q  62 gctaataattttagaaaatcagataattcaatgtaattatatgtgtc 108  Q
    ||||||||||| ||||||||| |||||| | ||||||||||||||||    
T  49505207 gctaataatttgagaaaatcacataatttagtgtaattatatgtgtc 49505161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 51 - 100
Target Start/End: Original strand, 28917996 - 28918045
Alignment:
Q  51 acgccgacattgctaataattttagaaaatcagataattcaatgtaatta 100  Q
    |||||||||| ||||||||||| | ||||||| |||||||| ||||||||    
T  28917996 acgccgacatagctaataatttgaaaaaatcacataattcagtgtaatta 28918045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 63 - 108
Target Start/End: Original strand, 29508451 - 29508496
Alignment:
Q  63 ctaataattttagaaaatcagataattcaatgtaattatatgtgtc 108  Q
    |||||||||| | ||||||| |||||||| ||||||||||||||||    
T  29508451 ctaataatttgaaaaaatcatataattcagtgtaattatatgtgtc 29508496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 51 - 108
Target Start/End: Complemental strand, 48202333 - 48202276
Alignment:
Q  51 acgccgacattgctaataattttagaaaatcagataattcaatgtaattatatgtgtc 108  Q
    ||||||||||   ||||| ||| ||||||||| |||||| ||||||||||||||||||    
T  48202333 acgccgacatccataatagtttgagaaaatcacataatttaatgtaattatatgtgtc 48202276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 107
Target Start/End: Complemental strand, 23184128 - 23184080
Alignment:
Q  59 attgctaataattttagaaaatcagataattcaatgtaattatatgtgt 107  Q
    |||| ||||||||| | ||||||| ||||||| ||||||||||||||||    
T  23184128 attgataataatttgacaaaatcatataattctatgtaattatatgtgt 23184080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 108
Target Start/End: Complemental strand, 32804591 - 32804547
Alignment:
Q  64 taataattttagaaaatcagataattcaatgtaattatatgtgtc 108  Q
    ||||||||| ||||||||| |||||| | ||||||||||||||||    
T  32804591 taataatttgagaaaatcacataatttagtgtaattatatgtgtc 32804547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 108
Target Start/End: Complemental strand, 40150622 - 40150578
Alignment:
Q  64 taataattttagaaaatcagataattcaatgtaattatatgtgtc 108  Q
    ||||||||| ||||||| | ||||||||||||||| |||||||||    
T  40150622 taataatttgagaaaatgatataattcaatgtaatcatatgtgtc 40150578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 34 - 108
Target Start/End: Complemental strand, 135393 - 135319
Alignment:
Q  34 acgacacagataccaatacgccgacattgctaataattttagaaaatcagataattcaatgtaattatatgtgtc 108  Q
    |||||||||| ||||| || |||||| |||||||||||| ||||||||| |||||||  ||||||||||||||||    
T  135393 acgacacagacaccaacacaccgacactgctaataatttgagaaaatcacataattctgtgtaattatatgtgtc 135319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 39)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 398879 - 398735
Alignment:
Q  1 tatgaaacacggatacagacacagataccagacacgacacagataccaatacgccgacattgctaataattttagaaaatcagataattcaatgtaatta 100  Q
    |||||| ||||||||| ||| | || ||| |||||||||| || ||  | |||||||||  ||||||||||| | ||||||| |||||||| ||||||||    
T  398879 tatgaagcacggatacggacgcggacaccggacacgacacggacactgacacgccgacaccgctaataatttgaaaaaatcacataattcagtgtaatta 398780  T
Q  101 tatgtgtccggaacatgtctaatccgagtagtgtatgtgcttcat 145  Q
    || |||||||| ||| | ||||||  || |||||  |||||||||    
T  398779 taggtgtccgggacacgcctaatctaagaagtgtccgtgcttcat 398735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 7918325 - 7918218
Alignment:
Q  1 tatgaaacacggatacagacacagataccagacacgacacagataccaatacgccgacattgctaataattttagaaaatcagataattcaatgtaatta 100  Q
    |||||| ||||| ||||||||  || ||| ||||||||||||| |   | |||| |||||  |||||||||| ||||||||| |||||||| ||||||||    
T  7918325 tatgaagcacggttacagacatggacaccggacacgacacagacaatgacacgctgacatcactaataatttgagaaaatcacataattcagtgtaatta 7918226  T
Q  101 tatgtgtc 108  Q
    ||||||||    
T  7918225 tatgtgtc 7918218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 10577849 - 10577742
Alignment:
Q  1 tatgaaacacggatacagacacagataccagacacgacacagataccaatacgccgacattgctaataattttagaaaatcagataattcaatgtaatta 100  Q
    |||||| ||||||||| ||||| || ||| |||||||||| || ||| | |||||||||  ||||||  ||||||||||||| | ||| || ||||||||    
T  10577849 tatgaagcacggatacggacacggacaccggacacgacacggacaccgacacgccgacacagctaatttttttagaaaatcacaaaatgcagtgtaatta 10577750  T
Q  101 tatgtgtc 108  Q
    ||||||||    
T  10577749 tatgtgtc 10577742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 41877584 - 41877485
Alignment:
Q  1 tatgaaacacggatacagacacagataccagacacgacacagataccaatacgccgacattgctaataattttagaaaatcagataattcaatgtaatta 100  Q
    |||||| ||||||||| ||||  |||||||||||||||||||| ||   ||||||||||  ||||||||||| ||||||| | |||||| | ||||||||    
T  41877584 tatgaagcacggatacggacatggataccagacacgacacagacactggtacgccgacaccgctaataatttgagaaaattacataatttagtgtaatta 41877485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 62 - 107
Target Start/End: Original strand, 6427356 - 6427401
Alignment:
Q  62 gctaataattttagaaaatcagataattcaatgtaattatatgtgt 107  Q
    ||||||||||| ||||||||| ||||||||||||||||||||||||    
T  6427356 gctaataatttgagaaaatcacataattcaatgtaattatatgtgt 6427401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 34298381 - 34298482
Alignment:
Q  1 tatgaaacacggatacagacacagataccagacacgacacagataccaatacgccgacattgctaataattttagaaaatcagataattcaatgtaatta 100  Q
    |||||||||| |||||||||||  | |||||||||||||| || ||  | || ||||||   |||||||||| ||||||||| |||||||| ||||||||    
T  34298381 tatgaaacaccgatacagacacgtacaccagacacgacacggaaactgacacaccgacaccactaataatttgagaaaatcacataattcagtgtaatta 34298480  T
Q  101 ta 102  Q
    ||    
T  34298481 ta 34298482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 32 - 108
Target Start/End: Complemental strand, 1864962 - 1864887
Alignment:
Q  32 acacgacacagataccaatacgccgacattgctaataattttagaaaatcagataattcaatgtaattatatgtgtc 108  Q
    ||||||||||||||| | ||| ||||||  | ||||||||| ||||||||| |||||||| ||||||||||||||||    
T  1864962 acacgacacagatacta-tacaccgacacagttaataatttgagaaaatcacataattcagtgtaattatatgtgtc 1864887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 51 - 107
Target Start/End: Original strand, 13436453 - 13436509
Alignment:
Q  51 acgccgacattgctaataattttagaaaatcagataattcaatgtaattatatgtgt 107  Q
    ||||||||| |||||||||||| || |||||| |||||||| |||||||||||||||    
T  13436453 acgccgacactgctaataatttaaggaaatcacataattcagtgtaattatatgtgt 13436509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 1486823 - 1486716
Alignment:
Q  1 tatgaaacacggatacagacacagataccagacacgacacagataccaatacgccgacattgctaataattttagaaaatcagataattcaatgtaatta 100  Q
    |||||| || |||||| ||||| |||||| || ||||||| |||||  | |||| ||||  ||||||||||| | ||||||| |||||||| ||||||||    
T  1486823 tatgaagcatggatacggacacggataccggatacgacacggatactgacacgctgacacagctaataatttgaaaaaatcacataattcagtgtaatta 1486724  T
Q  101 tatgtgtc 108  Q
    || |||||    
T  1486723 taagtgtc 1486716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 47989443 - 47989541
Alignment:
Q  1 tatgaaacacggatacagacacagataccagacacgacacagataccaatacgccgacattgctaataattttagaaaatcagataattcaatgtaatta 100  Q
    |||||| || |||||||||||| |||||||||||||||||||| ||  | |||||||||    ||||||||| | ||||||| |||||||| ||||||||    
T  47989443 tatgaagcatggatacagacacggataccagacacgacacagacactgacacgccgaca-caataataatttaaaaaaatcacataattcagtgtaatta 47989541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 108
Target Start/End: Original strand, 9709767 - 9709872
Alignment:
Q  3 tgaaacacggatacagacacagataccagacacgacacagataccaatacgccgacattgctaataattttagaaaatcagataattcaatgtaattata 102  Q
    |||| ||||||||||||||  || | |||||||||||| || ||  | | ||| |||  ||||||||||| ||||||||| |||||||  ||||||||||    
T  9709767 tgaagcacggatacagacatggacatcagacacgacacggacactgacatgcctacaccgctaataatttgagaaaatcacataattcgttgtaattata 9709866  T
Q  103 tgtgtc 108  Q
    ||||||    
T  9709867 tgtgtc 9709872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 49 - 106
Target Start/End: Original strand, 19324555 - 19324612
Alignment:
Q  49 atacgccgacattgctaataattttagaaaatcagataattcaatgtaattatatgtg 106  Q
    ||||| ||||| |||| ||||||| ||||||||| |||||||| ||||||||||||||    
T  19324555 atacgtcgacactgctgataatttgagaaaatcacataattcagtgtaattatatgtg 19324612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 51 - 108
Target Start/End: Original strand, 36878456 - 36878513
Alignment:
Q  51 acgccgacattgctaataattttagaaaatcagataattcaatgtaattatatgtgtc 108  Q
    |||||||||  ||||||||||| ||||||||| |||||||| |||||||||| |||||    
T  36878456 acgccgacaccgctaataatttgagaaaatcacataattcagtgtaattataggtgtc 36878513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 51 - 108
Target Start/End: Complemental strand, 39953210 - 39953153
Alignment:
Q  51 acgccgacattgctaataattttagaaaatcagataattcaatgtaattatatgtgtc 108  Q
    |||||||||  ||||||||||||||||||||| |||||| | ||||||| ||||||||    
T  39953210 acgccgacaccgctaataattttagaaaatcacataatttagtgtaattgtatgtgtc 39953153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 56 - 105
Target Start/End: Original strand, 40181871 - 40181920
Alignment:
Q  56 gacattgctaataattttagaaaatcagataattcaatgtaattatatgt 105  Q
    |||| |||||||||||| ||||||||| |||||||| |||||||||||||    
T  40181871 gacactgctaataatttgagaaaatcacataattcagtgtaattatatgt 40181920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 17831639 - 17831538
Alignment:
Q  1 tatgaaacacggatacagacacagataccagacacgacacagataccaatacgccgacattgctaataattttagaaaatcagataattcaatgtaatta 100  Q
    |||||| |||||||||||||||||| ||| || ||||||| || ||      |||||||  ||||||||||| ||||||||| || ||||| |||||| |    
T  17831639 tatgaagcacggatacagacacagacaccggatacgacactgacac------gccgacaccgctaataatttgagaaaatcacattattcagtgtaatca 17831546  T
Q  101 tatgtgtc 108  Q
    ||||||||    
T  17831545 tatgtgtc 17831538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 51 - 107
Target Start/End: Complemental strand, 19562685 - 19562629
Alignment:
Q  51 acgccgacattgctaataattttagaaaatcagataattcaatgtaattatatgtgt 107  Q
    ||||||||| |||||||||||| ||||||||  ||| |||| |||||||||||||||    
T  19562685 acgccgacactgctaataatttgagaaaatctcatagttcagtgtaattatatgtgt 19562629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 55 - 103
Target Start/End: Original strand, 28460767 - 28460815
Alignment:
Q  55 cgacattgctaataattttagaaaatcagataattcaatgtaattatat 103  Q
    |||||||| ||||||||| ||||||||| |||||| |||||||||||||    
T  28460767 cgacattgttaataatttcagaaaatcaaataattaaatgtaattatat 28460815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 108
Target Start/End: Original strand, 38503272 - 38503372
Alignment:
Q  8 cacggatacagacacagataccagacacgacacagataccaatacgccgacattgctaataattttagaaaatcagataattcaatgtaattatatgtgt 107  Q
    ||||||||| ||||| || ||  |||| ||||| || || || || ||||||  ||||||||||| ||||||||| ||| |||| |||||||||||||||    
T  38503272 cacggatacggacacggacacgggacatgacacggacactaacacaccgacaccgctaataatttgagaaaatcatatatttcagtgtaattatatgtgt 38503371  T
Q  108 c 108  Q
    |    
T  38503372 c 38503372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 51 - 106
Target Start/End: Complemental strand, 12443524 - 12443469
Alignment:
Q  51 acgccgacattgctaataattttagaaaatcagataattcaatgtaattatatgtg 106  Q
    |||||||||  ||||||||||| ||||||||| |||||||| ||||||| ||||||    
T  12443524 acgccgacacagctaataatttgagaaaatcacataattcagtgtaattgtatgtg 12443469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 16927297 - 16927197
Alignment:
Q  1 tatgaaacacggatacagacacagataccagacacgacacagataccaatacgccgacattgctaataattttagaaaatcagataattcaatgtaatta 100  Q
    |||||| ||||||||||  |||||| | || |||||||||||| ||  | ||| || ||| ||||||||||| | ||||||| |||||||| ||||||||    
T  16927297 tatgaagcacggataca--cacagacatcaaacacgacacagacactgacacgtcggcatagctaataatttgaaaaaatcatataattcagtgtaatta 16927200  T
Q  101 tat 103  Q
    |||    
T  16927199 tat 16927197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 64 - 107
Target Start/End: Complemental strand, 17425144 - 17425101
Alignment:
Q  64 taataattttagaaaatcagataattcaatgtaattatatgtgt 107  Q
    ||||||||| | ||||||| ||||||||||||||||||||||||    
T  17425144 taataatttgataaaatcacataattcaatgtaattatatgtgt 17425101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 49 - 108
Target Start/End: Complemental strand, 32724164 - 32724105
Alignment:
Q  49 atacgccgacattgctaataattttagaaaatcagataattcaatgtaattatatgtgtc 108  Q
    |||||||||||| | ||||||||| ||||| | | |||||| ||||||||||||||||||    
T  32724164 atacgccgacatcgttaataatttgagaaatttacataatttaatgtaattatatgtgtc 32724105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 107
Target Start/End: Complemental strand, 25098617 - 25098563
Alignment:
Q  53 gccgacattgctaataattttagaaaatcagataattcaatgtaattatatgtgt 107  Q
    |||||||  ||| ||||||| ||||||||| |||||||| |||||||||||||||    
T  25098617 gccgacaccgctgataatttgagaaaatcacataattcagtgtaattatatgtgt 25098563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 108
Target Start/End: Original strand, 25361896 - 25361938
Alignment:
Q  66 ataattttagaaaatcagataattcaatgtaattatatgtgtc 108  Q
    ||||||| ||||||||| |||||||| ||||||||||||||||    
T  25361896 ataatttgagaaaatcacataattcagtgtaattatatgtgtc 25361938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 108
Target Start/End: Original strand, 30749854 - 30749892
Alignment:
Q  70 ttttagaaaatcagataattcaatgtaattatatgtgtc 108  Q
    ||||||||||||| |||||||| ||||||||||||||||    
T  30749854 ttttagaaaatcacataattcagtgtaattatatgtgtc 30749892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 108
Target Start/End: Original strand, 30771305 - 30771343
Alignment:
Q  70 ttttagaaaatcagataattcaatgtaattatatgtgtc 108  Q
    ||||||||||||| |||||||| ||||||||||||||||    
T  30771305 ttttagaaaatcacataattcagtgtaattatatgtgtc 30771343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 108
Target Start/End: Original strand, 44482240 - 44482282
Alignment:
Q  66 ataattttagaaaatcagataattcaatgtaattatatgtgtc 108  Q
    ||||||| ||||||||| |||||||| ||||||||||||||||    
T  44482240 ataatttgagaaaatcacataattcagtgtaattatatgtgtc 44482282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 51 - 100
Target Start/End: Original strand, 1262879 - 1262928
Alignment:
Q  51 acgccgacattgctaataattttagaaaatcagataattcaatgtaatta 100  Q
    |||||||||  ||||||||||| ||||||||| |||||||||| ||||||    
T  1262879 acgccgacacagctaataatttgagaaaatcacataattcaatataatta 1262928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 64 - 101
Target Start/End: Complemental strand, 2288218 - 2288181
Alignment:
Q  64 taataattttagaaaatcagataattcaatgtaattat 101  Q
    ||||||||| ||||||||| ||||||||||||||||||    
T  2288218 taataatttaagaaaatcacataattcaatgtaattat 2288181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 31 - 100
Target Start/End: Complemental strand, 5376584 - 5376515
Alignment:
Q  31 gacacgacacagataccaatacgccgacattgctaataattttagaaaatcagataattcaatgtaatta 100  Q
    |||||||||| || || || |||||||||  ||||||||||| ||||||| | |||||||| ||||||||    
T  5376584 gacacgacacggacactaacacgccgacaccgctaataatttaagaaaataacataattcagtgtaatta 5376515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 63 - 108
Target Start/End: Original strand, 10233260 - 10233305
Alignment:
Q  63 ctaataattttagaaaatcagataattcaatgtaattatatgtgtc 108  Q
    ||||||| || ||||||||| |||||||| ||||||||||||||||    
T  10233260 ctaataaattgagaaaatcacataattcagtgtaattatatgtgtc 10233305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 51 - 108
Target Start/End: Complemental strand, 29163445 - 29163388
Alignment:
Q  51 acgccgacattgctaataattttagaaaatcagataattcaatgtaattatatgtgtc 108  Q
    |||||||||  ||||| |||||  |||||||| |||||||||| ||||||||||||||    
T  29163445 acgccgacaccgctaaaaatttaggaaaatcacataattcaatttaattatatgtgtc 29163388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 108
Target Start/End: Complemental strand, 16164366 - 16164322
Alignment:
Q  64 taataattttagaaaatcagataattcaatgtaattatatgtgtc 108  Q
    ||||||||| | ||||||| |||||| ||||||||||||||||||    
T  16164366 taataatttgaaaaaatcacataatttaatgtaattatatgtgtc 16164322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 104
Target Start/End: Original strand, 22781434 - 22781490
Alignment:
Q  48 aatacgccgacattgctaataattttagaaaatcagataattcaatgtaattatatg 104  Q
    ||||||| ||||  ||||||||||||| ||||||| |||||| ||| ||||||||||    
T  22781434 aatacgctgacaccgctaataattttataaaatcatataattaaatataattatatg 22781490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 108
Target Start/End: Complemental strand, 30847779 - 30847727
Alignment:
Q  56 gacattgctaataattttagaaaatcagataattcaatgtaattatatgtgtc 108  Q
    |||| |||||||||||| | ||||| | ||||||||||||||| |||||||||    
T  30847779 gacactgctaataatttgaaaaaatgacataattcaatgtaatcatatgtgtc 30847727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 108
Target Start/End: Complemental strand, 39130818 - 39130774
Alignment:
Q  64 taataattttagaaaatcagataattcaatgtaattatatgtgtc 108  Q
    ||||||||||||||||| | |||||| | ||||||||||||||||    
T  39130818 taataattttagaaaattatataatttagtgtaattatatgtgtc 39130774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 108
Target Start/End: Complemental strand, 40747824 - 40747780
Alignment:
Q  64 taataattttagaaaatcagataattcaatgtaattatatgtgtc 108  Q
    ||||||||| ||||||| | ||||||||||||||||||| |||||    
T  40747824 taataatttgagaaaatgacataattcaatgtaattataggtgtc 40747780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 108
Target Start/End: Original strand, 52903257 - 52903301
Alignment:
Q  64 taataattttagaaaatcagataattcaatgtaattatatgtgtc 108  Q
    ||||||||| | ||||||| |||||||| ||||||||||||||||    
T  52903257 taataatttaataaaatcatataattcagtgtaattatatgtgtc 52903301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 225382 - 225275
Alignment:
Q  1 tatgaaacacggatacagacacagataccagacacgacacagataccaatacgccgacattgctaataattttagaaaatcagataattcaatgtaatta 100  Q
    ||||||||||||| |||||||| || ||| |||||||||| || ||  | |||||||||  | ||||||||| ||||||| | ||||| |||||||||||    
T  225382 tatgaaacacggacacagacacggacaccggacacgacacggacactgacacgccgacacagataataatttgagaaaatgacataatacaatgtaatta 225283  T
Q  101 tatgtgtc 108  Q
    || |||||    
T  225282 taagtgtc 225275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 28)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 12 - 108
Target Start/End: Complemental strand, 16203898 - 16203802
Alignment:
Q  12 gatacagacacagataccagacacgacacagataccaatacgccgacattgctaataattttagaaaatcagataattcaatgtaattatatgtgtc 108  Q
    |||||||||||||| |||  ||| ||||| || || || | ||||||| |||||||||||| ||||||||  |||||| | ||||||||||||||||    
T  16203898 gatacagacacagacaccgaacatgacacggacactaacatgccgacactgctaataatttgagaaaatctcataatttagtgtaattatatgtgtc 16203802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 61 - 108
Target Start/End: Complemental strand, 23012462 - 23012415
Alignment:
Q  61 tgctaataattttagaaaatcagataattcaatgtaattatatgtgtc 108  Q
    |||||||||||| ||||||||| |||||| ||||||||||||||||||    
T  23012462 tgctaataatttgagaaaatcatataatttaatgtaattatatgtgtc 23012415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 62 - 107
Target Start/End: Complemental strand, 6471942 - 6471897
Alignment:
Q  62 gctaataattttagaaaatcagataattcaatgtaattatatgtgt 107  Q
    ||||||||||| ||||||||| |||||||| |||||||||||||||    
T  6471942 gctaataatttgagaaaatcacataattcagtgtaattatatgtgt 6471897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 108
Target Start/End: Complemental strand, 17925223 - 17925179
Alignment:
Q  64 taataattttagaaaatcagataattcaatgtaattatatgtgtc 108  Q
    ||||||||| ||||||||| ||||||||||||||| |||||||||    
T  17925223 taataatttaagaaaatcacataattcaatgtaataatatgtgtc 17925179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 108
Target Start/End: Complemental strand, 32630786 - 32630742
Alignment:
Q  64 taataattttagaaaatcagataattcaatgtaattatatgtgtc 108  Q
    ||||||||| ||||||| | |||||||||||||||||||||||||    
T  32630786 taataatttgagaaaattatataattcaatgtaattatatgtgtc 32630742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 108
Target Start/End: Complemental strand, 41091316 - 41091264
Alignment:
Q  56 gacattgctaataattttagaaaatcagataattcaatgtaattatatgtgtc 108  Q
    |||| ||||||| |||| ||||||||| |||||||| ||||||||||||||||    
T  41091316 gacactgctaatgatttgagaaaatcacataattcagtgtaattatatgtgtc 41091264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 53 - 108
Target Start/End: Original strand, 3966500 - 3966555
Alignment:
Q  53 gccgacattgctaataattttagaaaatcagataattcaatgtaattatatgtgtc 108  Q
    |||||||  ||||||||||| ||||||||| | |||||| ||||||||||||||||    
T  3966500 gccgacaccgctaataatttgagaaaatcacacaattcagtgtaattatatgtgtc 3966555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 6401443 - 6401550
Alignment:
Q  1 tatgaaacacggatacagacacagataccagacacgacacagataccaatacgccgacattgctaataattttagaaaatcagataattcaatgtaatta 100  Q
    |||||| ||||||||||||||| || ||| ||| |||||| || ||| | |||||||||   ||||   ||||||||||||| | ||| || ||||||||    
T  6401443 tatgaagcacggatacagacacggacaccggacgcgacacggacaccgacacgccgacacaactaaattttttagaaaatcacaaaatacagtgtaatta 6401542  T
Q  101 tatgtgtc 108  Q
    ||||||||    
T  6401543 tatgtgtc 6401550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 17177137 - 17177038
Alignment:
Q  1 tatgaaacacggatacagacacagataccagacacgacacagataccaatacgccgacattgctaataattttagaaaatcagataattcaatgtaatta 100  Q
    |||||| ||||||||| |||||||| |||||| ||||| | || ||  ||||||| |||  ||||||||||| | ||||||| | |||||| ||||||||    
T  17177137 tatgaagcacggatacggacacagacaccagatacgactcggacactgatacgccaacacagctaataatttgaaaaaatcaaaaaattcattgtaatta 17177038  T

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Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 21522695 - 21522794
Alignment:
Q  1 tatgaaacacggatacagacacagataccagacacgacacagataccaatacgccgacattgctaataattttagaaaatcagataattcaatgtaatta 100  Q
    |||||| ||||||||| ||||| |  ||| |||||||||| || ||  | |||||||||  ||||||||||||| ||||| | |||||||| ||||||||    
T  21522695 tatgaagcacggatacggacacggtcaccggacacgacacggacactgacacgccgacacagctaataattttaaaaaataacataattcagtgtaatta 21522794  T

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Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 21533261 - 21533360
Alignment:
Q  1 tatgaaacacggatacagacacagataccagacacgacacagataccaatacgccgacattgctaataattttagaaaatcagataattcaatgtaatta 100  Q
    |||||| ||||||||| ||||| |  ||| |||||||||| || ||  | |||||||||  ||||||||||||| ||||| | |||||||| ||||||||    
T  21533261 tatgaagcacggatacggacacggtcaccggacacgacacggacactgacacgccgacacagctaataattttaaaaaataacataattcagtgtaatta 21533360  T

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Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 108
Target Start/End: Original strand, 12927652 - 12927706
Alignment:
Q  54 ccgacattgctaataattttagaaaatcagataattcaatgtaattatatgtgtc 108  Q
    ||||||| ||||||||||| ||||||||| |||||| | ||||||||||| ||||    
T  12927652 ccgacatcgctaataatttgagaaaatcatataatttagtgtaattatatatgtc 12927706  T

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Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 15410562 - 15410456
Alignment:
Q  1 tatgaaacacggatacagacacagataccagacacgacacagataccaatacgccgacattgctaataattttagaaaatcagataattcaatgtaatta 100  Q
    |||||||||||||||| |||   || | |||||||||||| || ||  | |||||||||  ||||||||||| ||||||| | || ||||| |||||| |    
T  15410562 tatgaaacacggatacggacgtggacatcagacacgacacggacactgacacgccgacaccgctaataatttaagaaaattatatgattcagtgtaatca 15410463  T
Q  101 tatgtgt 107  Q
    |||||||    
T  15410462 tatgtgt 15410456  T

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Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 102
Target Start/End: Original strand, 30098334 - 30098372
Alignment:
Q  64 taataattttagaaaatcagataattcaatgtaattata 102  Q
    ||||||||| ||||||||| |||||||||||||||||||    
T  30098334 taataatttgagaaaatcacataattcaatgtaattata 30098372  T

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Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 108
Target Start/End: Complemental strand, 30502441 - 30502395
Alignment:
Q  62 gctaataattttagaaaatcagataattcaatgtaattatatgtgtc 108  Q
    ||||||||||| |||||||||  ||||||| ||||||||||||||||    
T  30502441 gctaataatttgagaaaatcacttaattcagtgtaattatatgtgtc 30502395  T

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Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 108
Target Start/End: Complemental strand, 30542784 - 30542738
Alignment:
Q  62 gctaataattttagaaaatcagataattcaatgtaattatatgtgtc 108  Q
    ||||||||||| |||||||||  ||||||| ||||||||||||||||    
T  30542784 gctaataatttgagaaaatcacttaattcagtgtaattatatgtgtc 30542738  T

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Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 108
Target Start/End: Original strand, 39758286 - 39758324
Alignment:
Q  70 ttttagaaaatcagataattcaatgtaattatatgtgtc 108  Q
    ||||||||||||| |||||||| ||||||||||||||||    
T  39758286 ttttagaaaatcacataattcagtgtaattatatgtgtc 39758324  T

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Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 105
Target Start/End: Original strand, 42029767 - 42029801
Alignment:
Q  71 tttagaaaatcagataattcaatgtaattatatgt 105  Q
    |||||||||||| ||||||||||||||||||||||    
T  42029767 tttagaaaatcacataattcaatgtaattatatgt 42029801  T

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Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 51 - 100
Target Start/End: Original strand, 8420022 - 8420071
Alignment:
Q  51 acgccgacattgctaataattttagaaaatcagataattcaatgtaatta 100  Q
    |||||||||| ||||||||||| | ||||| | |||||||||||||||||    
T  8420022 acgccgacatagctaataatttgaaaaaataacataattcaatgtaatta 8420071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 53 - 106
Target Start/End: Original strand, 18592070 - 18592123
Alignment:
Q  53 gccgacattgctaataattttagaaaatcagataattcaatgtaattatatgtg 106  Q
    |||||||  ||||||| ||| ||||||| | |||||||||||||||||||||||    
T  18592070 gccgacaccgctaatattttaagaaaattacataattcaatgtaattatatgtg 18592123  T

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Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 51 - 108
Target Start/End: Original strand, 27144458 - 27144515
Alignment:
Q  51 acgccgacattgctaataattttagaaaatcagataattcaatgtaattatatgtgtc 108  Q
    |||||||||  ||||||||||| || |||||| |||||| | ||||||||||||||||    
T  27144458 acgccgacaccgctaataatttgaggaaatcacataatttagtgtaattatatgtgtc 27144515  T

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Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 51 - 100
Target Start/End: Original strand, 31084318 - 31084367
Alignment:
Q  51 acgccgacattgctaataattttagaaaatcagataattcaatgtaatta 100  Q
    |||||||||  ||||||||||| | ||||||| |||||||||||||||||    
T  31084318 acgccgacacagctaataatttgaaaaaatcacataattcaatgtaatta 31084367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 62 - 107
Target Start/End: Complemental strand, 32766996 - 32766951
Alignment:
Q  62 gctaataattttagaaaatcagataattcaatgtaattatatgtgt 107  Q
    ||||||||||| ||||||||  | ||||||||||||||||||||||    
T  32766996 gctaataatttgagaaaatcgcacaattcaatgtaattatatgtgt 32766951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 108
Target Start/End: Original strand, 9449477 - 9449521
Alignment:
Q  64 taataattttagaaaatcagataattcaatgtaattatatgtgtc 108  Q
    ||||||||| ||||||||| |||||||||||||| ||| ||||||    
T  9449477 taataatttgagaaaatcacataattcaatgtaactatttgtgtc 9449521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 108
Target Start/End: Complemental strand, 18421900 - 18421848
Alignment:
Q  56 gacattgctaataattttagaaaatcagataattcaatgtaattatatgtgtc 108  Q
    |||| |||| ||||||| ||||||||| ||||| || ||||||||||||||||    
T  18421900 gacactgctgataatttgagaaaatcacataatccagtgtaattatatgtgtc 18421848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 108
Target Start/End: Complemental strand, 18607172 - 18607104
Alignment:
Q  40 cagataccaatacgccgacattgctaataattttagaaaatcagataattcaatgtaattatatgtgtc 108  Q
    |||| ||| |||| ||||||| | ||||||||| ||||||| | ||||||||||||||| ||| |||||    
T  18607172 cagacaccgatacaccgacatggataataatttgagaaaataacataattcaatgtaatcataggtgtc 18607104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 107
Target Start/End: Complemental strand, 19293511 - 19293431
Alignment:
Q  27 accagacacgacacagataccaatacgccgacattgctaataattttagaaaatcagataattcaatgtaattatatgtgt 107  Q
    ||||||||||||||||| ||||| |||| ||||    ||||||||| ||||||| | |||||| | |||||| ||||||||    
T  19293511 accagacacgacacagacaccaacacgctgacaccaataataatttaagaaaataacataattaagtgtaatcatatgtgt 19293431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 107
Target Start/End: Original strand, 39205879 - 39205931
Alignment:
Q  55 cgacattgctaataattttagaaaatcagataattcaatgtaattatatgtgt 107  Q
    ||||| |||||||||||| ||||||||| ||||||   |||||||||||||||    
T  39205879 cgacactgctaataatttgagaaaatcatataattaggtgtaattatatgtgt 39205931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0116 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0116
Description:

Target: scaffold0116; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 9843 - 9950
Alignment:
Q  1 tatgaaacacggatacagacacagataccagacacgacacagataccaatacgccgacattgctaataattttagaaaatcagataattcaatgtaatta 100  Q
    |||||| ||||||||| ||||| || ||| |||||||||  || ||| | |||||||||  ||||||  ||||||||||||| | ||| || ||||||||    
T  9843 tatgaagcacggatacggacacggacaccggacacgacatggacaccgacacgccgacacagctaatttttttagaaaatcataaaatgcagtgtaatta 9942  T
Q  101 tatgtgtc 108  Q
    ||||||||    
T  9943 tatgtgtc 9950  T

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Target: scaffold0022 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 64 - 107
Target Start/End: Original strand, 99901 - 99944
Alignment:
Q  64 taataattttagaaaatcagataattcaatgtaattatatgtgt 107  Q
    ||||||||||||||||| | ||||||||||||||||||||||||    
T  99901 taataattttagaaaataacataattcaatgtaattatatgtgt 99944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 108
Target Start/End: Original strand, 90851 - 90895
Alignment:
Q  64 taataattttagaaaatcagataattcaatgtaattatatgtgtc 108  Q
    ||||||||| ||||||||| |||||||| ||||||||||| ||||    
T  90851 taataatttgagaaaatcatataattcagtgtaattatatatgtc 90895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 51 - 108
Target Start/End: Original strand, 28845 - 28902
Alignment:
Q  51 acgccgacattgctaataattttagaaaatcagataattcaatgtaattatatgtgtc 108  Q
    |||||||||  | ||||||||| ||||||||  |||||||||||||||||||||||||    
T  28845 acgccgacaccgttaataatttaagaaaatcgcataattcaatgtaattatatgtgtc 28902  T

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Target: scaffold0652 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0652
Description:

Target: scaffold0652; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 100
Target Start/End: Complemental strand, 575 - 477
Alignment:
Q  2 atgaaacacggatacagacacagataccagacacgacacagataccaatacgccgacattgctaataattttagaaaatcagataattcaatgtaatta 100  Q
    ||||| ||||||||| ||||| || |||  ||||| ||| || ||  ||||||||||| |||||||||||| | ||||||| | |||||| ||||||||    
T  575 atgaagcacggatacggacacggacaccgaacacgccacggacactgatacgccgacactgctaataatttgaaaaaatcacaaaattcagtgtaatta 477  T

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Target: scaffold0475 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0475
Description:

Target: scaffold0475; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 80
Target Start/End: Original strand, 3262 - 3340
Alignment:
Q  2 atgaaacacggatacagacacagataccagacacgacacagataccaatacgccgacattgctaataattttagaaaat 80  Q
    ||||| |||||||| |||||| || ||| |||||||||| |||||  | ||| ||||| |||||| |||||||||||||    
T  3262 atgaagcacggatatagacacggacaccggacacgacacggatactgacacgtcgacaatgctaacaattttagaaaat 3340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0123 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 108
Target Start/End: Complemental strand, 44578 - 44532
Alignment:
Q  62 gctaataattttagaaaatcagataattcaatgtaattatatgtgtc 108  Q
    ||||| ||||| ||||||||| |||||||| ||||||||||||||||    
T  44578 gctaaaaatttgagaaaatcacataattcagtgtaattatatgtgtc 44532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0085 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 63 - 108
Target Start/End: Original strand, 26400 - 26445
Alignment:
Q  63 ctaataattttagaaaatcagataattcaatgtaattatatgtgtc 108  Q
    |||||||||| ||||||||| ||||||||||||  |||||||||||    
T  26400 ctaataatttgagaaaatcacataattcaatgtcgttatatgtgtc 26445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 63 - 108
Target Start/End: Complemental strand, 9799 - 9754
Alignment:
Q  63 ctaataattttagaaaatcagataattcaatgtaattatatgtgtc 108  Q
    |||||||||| |||||||||  ||||||| ||||||||||||||||    
T  9799 ctaataatttgagaaaatcacttaattcagtgtaattatatgtgtc 9754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0376 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0376
Description:

Target: scaffold0376; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 108
Target Start/End: Original strand, 6312 - 6364
Alignment:
Q  56 gacattgctaataattttagaaaatcagataattcaatgtaattatatgtgtc 108  Q
    |||| |||||||||||| | |||||   |||||||||||||||||||||||||    
T  6312 gacactgctaataatttgacaaaattgcataattcaatgtaattatatgtgtc 6364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 108
Target Start/End: Complemental strand, 240072 - 240028
Alignment:
Q  64 taataattttagaaaatcagataattcaatgtaattatatgtgtc 108  Q
    ||||||||| ||||||| | ||||||||||||||| |||||||||    
T  240072 taataatttgagaaaataatataattcaatgtaatcatatgtgtc 240028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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