View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12235_high_2 (Length: 653)
Name: NF12235_high_2
Description: NF12235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12235_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 518; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 518; E-Value: 0
Query Start/End: Original strand, 21 - 637
Target Start/End: Original strand, 3789713 - 3790334
Alignment:
| Q |
21 |
gcaaagccaccattctccaaaatttatagtttgtatctcttgcacaaaatgatcaaagaagatcttatctacgccgcgccatgggaagtttgttgtgttc |
120 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3789713 |
gcaaagccaccattctccaaaatttatagtttgtatctcttgcacaaaatgatcaaagaagatcttatctacgccgcgccatgggaagtttgttgtgttc |
3789812 |
T |
|
| Q |
121 |
atcataggtatatcaggggagatttgaatttcttgttttttggtgggatttcctacaatgcgaaaaggagatcatgaagtattctat--gttaatctcaa |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
3789813 |
atcataggtatatcaggggagatttgaatttcttgttttttggtgggatttcctacaatgcgaaaaggagatcatgaagtattctatatgttaatctcaa |
3789912 |
T |
|
| Q |
219 |
cctcagctcgaaattatgttatatcggaaattagtaacaaaagagtatagaaacatatatcacaaacaatggaacatgatcaattgtttatgcaattcag |
318 |
Q |
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||| ||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
3789913 |
cctaagctcgaaattatgttacatcagaaattagtaacaaaagagtatagaaacatatatcacaaacaatggaacatgatcaattctttatgcaattcag |
3790012 |
T |
|
| Q |
319 |
ccacgtgtatgcctaccactgcgactaaagagtagcagtagtttgatatactacttgagtgagttaaggtttacaatattacaagtcatatgtata---- |
414 |
Q |
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| T |
3790013 |
ccacgtgtatgcctaccactgcgactaaagagtagcagtagttcgatatactacttgagtgagttaaggtttacaatattacaagtcatatgtatatatg |
3790112 |
T |
|
| Q |
415 |
gtactacgatcaacgtttcaacaatatctctaaagttgaagggagcttcgcaatgccatgctagatgatcaccttcctcgcccttcccctcgtatgtgtc |
514 |
Q |
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| T |
3790113 |
gtactacgatccacgtttcaacaatagatctaaagttgaagggagcttcgcaatgccatgctagatgatcaccttcctcttccttcccctcttatgtgtc |
3790212 |
T |
|
| Q |
515 |
tatgagtagtcatactcaacaaattaattgaaaacaaattagaataatcataagcgagataagttttaattgagatgatgagtttannnnnnnncttgtt |
614 |
Q |
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| T |
3790213 |
tatgagtagtcatactcaacaaattaattgaaaacaaattagaataatcataagcgagataagttctaattgagatgatgagttta-ttttttccttgtt |
3790311 |
T |
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| Q |
615 |
gagaaatatgactatttgctcct |
637 |
Q |
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| T |
3790312 |
gagaaatatgactatttgctcct |
3790334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 21 - 294
Target Start/End: Complemental strand, 3800394 - 3800118
Alignment:
| Q |
21 |
gcaaagccaccattctccaaaatt---tatagtttgtatctcttgcacaaaatgatcaaagaagatcttatctacgccgcgccatgggaagtttgttgtg |
117 |
Q |
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|||||||||||||||||||||||| || |||||| ||||||||||| | || |||||| ||||||||||||||||| |||||||||| |||||||||| |
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| T |
3800394 |
gcaaagccaccattctccaaaattatttaaagtttgcatctcttgcaccatattatcaaataagatcttatctacgccacgccatgggatgtttgttgtg |
3800295 |
T |
|
| Q |
118 |
ttcatcataggtatatcaggggagatttgaatttcttgttttttggtgggatttcctacaatgcgaaaaggagatcatgaagtattctatgttaatctca |
217 |
Q |
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| T |
3800294 |
tccatcataggtatatccggggagatttgaatttcttgttttttggttggatttcctgcaatgccaaaacgagatcatgaaatatttgatgttgaactca |
3800195 |
T |
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| Q |
218 |
acctcagctcgaaattatgttatatcggaaattagtaacaaaagagtatagaaacatatatcacaaacaatggaaca |
294 |
Q |
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||| ||||||||||||||||| || || ||||||||||||| || ||| ||| | |||| |||||||| |||| |
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| T |
3800194 |
accaaagctcgaaattatgttacctcaacaactagtaacaaaagattaaagagacagaaatcataaacaatgaaaca |
3800118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 371 - 422
Target Start/End: Complemental strand, 34940260 - 34940209
Alignment:
| Q |
371 |
acttgagtgagttaaggtttacaatattacaagtcatatgtatagtactacg |
422 |
Q |
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| T |
34940260 |
acttgagtgaattaaggtttacaaagttacaagccatatatatagtactacg |
34940209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 365 - 414
Target Start/End: Original strand, 8808196 - 8808245
Alignment:
| Q |
365 |
tatactacttgagtgagttaaggtttacaatattacaagtcatatgtata |
414 |
Q |
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|||| ||||||||||||||| |||||||| | ||||||||||||| |||| |
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| T |
8808196 |
tatattacttgagtgagttagggtttacattgttacaagtcatatatata |
8808245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 364 - 436
Target Start/End: Complemental strand, 38970131 - 38970059
Alignment:
| Q |
364 |
atatactacttgagtgagttaaggtttacaatattacaagtcatatgtatagtactacgatcaacgtttcaac |
436 |
Q |
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||||| ||||||||||| ||| |||||||| | ||||||| |||| |||||||||||| |||| ||| |||| |
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| T |
38970131 |
atatattacttgagtgaattagggtttacagtgttacaagccatagatatagtactacgttcaaagttacaac |
38970059 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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