View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12235_high_3 (Length: 628)
Name: NF12235_high_3
Description: NF12235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12235_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 196; Significance: 1e-106; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 145 - 364
Target Start/End: Complemental strand, 16006175 - 16005956
Alignment:
| Q |
145 |
gcatacatgtgttaaaattggaagtgcacgtgtaatcaatttttatcaaattttaaagtcaactgaaccttggttaattatttggaagtattaaacaata |
244 |
Q |
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| T |
16006175 |
gcatacatatgttaaaattggaagtgcacgtgtaatcaatttttaagaaatttcaaagtcaactgaaccttggttaattaattggaagtattaaacaata |
16006076 |
T |
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| Q |
245 |
aggtaattttgtcccacttaaacacaaaaaatgggttcacaatcatacttgaactaaccatcacattcaccatatcacctcagcaatacacatatggacc |
344 |
Q |
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| T |
16006075 |
aggtaattttgtcccacttaaacacaaaaaatgggttcacaatcatacttgaactaaccatcacattcaccatatcacctgagcaatacacatatggacc |
16005976 |
T |
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| Q |
345 |
aaaccatgagtaccaaaatc |
364 |
Q |
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| T |
16005975 |
aaaccatgagtaccaaaatc |
16005956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 478 - 608
Target Start/End: Complemental strand, 16005874 - 16005729
Alignment:
| Q |
478 |
caaaaatatcaaatcaaacttcatcttgttcagcctccagattctgtgcaacttcttcagcttgttct---------------acctgtgcattttcttc |
562 |
Q |
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| T |
16005874 |
caaaaatatcaaatcaaacttcatcttgttcagcctccagattctgtgcaacttcttcagcttgttctacctcaatatcatcaacctgtgcattttcttc |
16005775 |
T |
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| Q |
563 |
tgcgccaagattttctgcaacttcttgtgcttgatttgccccaaca |
608 |
Q |
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| T |
16005774 |
tgcctcaagattttctacaacttcttgtgcttgatttgccccaaca |
16005729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 85 - 126
Target Start/End: Complemental strand, 16006235 - 16006194
Alignment:
| Q |
85 |
attatatggtcaaatgttattcaacttacatacgttcctaac |
126 |
Q |
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| T |
16006235 |
attatgtggtcaaatgttattcaacttacatatgttcctaac |
16006194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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