View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12235_high_5 (Length: 557)

Name: NF12235_high_5
Description: NF12235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12235_high_5
NF12235_high_5
[»] chr4 (10 HSPs)
chr4 (20-201)||(30089731-30089912)
chr4 (223-291)||(30090023-30090091)
chr4 (144-212)||(30089913-30089981)
chr4 (358-420)||(33911778-33911840)
chr4 (360-420)||(26934537-26934597)
chr4 (359-404)||(23710500-23710545)
chr4 (290-339)||(19451124-19451173)
chr4 (359-404)||(42116646-42116691)
chr4 (287-339)||(7905923-7905975)
chr4 (287-339)||(41496393-41496445)
[»] chr2 (6 HSPs)
chr2 (284-356)||(681676-681747)
chr2 (359-419)||(681850-681910)
chr2 (286-339)||(11188161-11188214)
chr2 (290-339)||(37038685-37038734)
chr2 (287-339)||(4658145-4658196)
chr2 (287-339)||(45423796-45423848)
[»] chr8 (10 HSPs)
chr8 (358-420)||(35908413-35908475)
chr8 (279-352)||(22699575-22699647)
chr8 (287-339)||(12339900-12339952)
chr8 (302-348)||(6115932-6115977)
chr8 (281-339)||(9419980-9420038)
chr8 (371-420)||(1162507-1162556)
chr8 (286-339)||(24245129-24245182)
chr8 (287-339)||(7612685-7612737)
chr8 (287-339)||(13367863-13367915)
chr8 (287-339)||(39765783-39765835)
[»] chr1 (7 HSPs)
chr1 (287-348)||(27209545-27209605)
chr1 (359-418)||(19563843-19563902)
chr1 (287-339)||(26594980-26595032)
chr1 (287-345)||(25009805-25009863)
chr1 (287-339)||(14593268-14593318)
chr1 (287-339)||(1430448-1430500)
chr1 (287-339)||(29568084-29568136)
[»] chr5 (5 HSPs)
chr5 (284-348)||(7736554-7736618)
chr5 (359-418)||(13123534-13123593)
chr5 (287-339)||(4631108-4631160)
chr5 (287-339)||(10344855-10344907)
chr5 (287-339)||(11977776-11977828)
[»] chr7 (7 HSPs)
chr7 (284-339)||(48843743-48843798)
chr7 (287-327)||(34733509-34733549)
chr7 (287-339)||(44057532-44057584)
chr7 (297-348)||(8292989-8293040)
chr7 (287-339)||(4268920-4268972)
chr7 (360-420)||(31929315-31929374)
chr7 (287-339)||(42286086-42286138)
[»] chr6 (5 HSPs)
chr6 (287-335)||(12459231-12459279)
chr6 (287-339)||(32429465-32429517)
chr6 (287-352)||(26405188-26405252)
chr6 (287-339)||(21271315-21271367)
chr6 (287-339)||(29915731-29915783)
[»] chr3 (7 HSPs)
chr3 (287-339)||(19897476-19897528)
chr3 (287-338)||(11337532-11337583)
chr3 (372-419)||(35461987-35462034)
chr3 (286-339)||(19115564-19115615)
chr3 (358-418)||(383186-383247)
chr3 (287-344)||(4759463-4759520)
chr3 (286-339)||(36844651-36844704)
[»] scaffold0026 (1 HSPs)
scaffold0026 (287-339)||(4329-4381)


Alignment Details
Target: chr4 (Bit Score: 170; Significance: 6e-91; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 170; E-Value: 6e-91
Query Start/End: Original strand, 20 - 201
Target Start/End: Original strand, 30089731 - 30089912
Alignment:
Q  20 ccgactccatttgttgttttcaagaggctgattcatcagaagtgaaccatcaatactaaatcaaatgatcacataattatattaacaagtaaggtaaaat 119  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  30089731 ccgactccatttgttgttttcaagaggctgattcatcagaagtaaaccatcaatactaaatcaaatgatcacataattatattaacaaggaaggtaaaat 30089830  T
Q  120 caaacacaacaatgagaacctcataaaagctactccgtgaatattgaagagcatcaatgatatagccatgtattataaacaa 201  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  30089831 caaacacaacaatgagaacctcataaaagctactccttgaatattgaagagcatcaatgatatagccatgtattataaacaa 30089912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 223 - 291
Target Start/End: Original strand, 30090023 - 30090091
Alignment:
Q  223 cgccttcacaatctgtatatattatgggatgtatcaaagagtttatttaagcttatctaataagtactc 291  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30090023 cgccttcacaatctgtatatattatgggatgtatcaaagagtttatttaagcttatctaataagtactc 30090091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 144 - 212
Target Start/End: Original strand, 30089913 - 30089981
Alignment:
Q  144 aaaagctactccgtgaatattgaagagcatcaatgatatagccatgtattataaacaatggtcaacaat 212  Q
    |||||||||||  | ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30089913 aaaagctactcattaaatattgaagagcatcaatgatatagccatgtattataaacaatggtcaacaat 30089981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 358 - 420
Target Start/End: Original strand, 33911778 - 33911840
Alignment:
Q  358 ccattaattagagggcataattgtaaaagtttacattgaaaagtgaatatgacattcattttg 420  Q
    |||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||    
T  33911778 ccattaattagagggcataattgtaaaagtttgcattgaaaagtgaacatgacattcattttg 33911840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 360 - 420
Target Start/End: Original strand, 26934537 - 26934597
Alignment:
Q  360 attaattagagggcataattgtaaaagtttacattgaaaagtgaatatgacattcattttg 420  Q
    |||||||| | |||||||||||||||||||| ||||||||||||| |||||||| ||||||    
T  26934537 attaattaaaaggcataattgtaaaagtttatattgaaaagtgaacatgacatttattttg 26934597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 359 - 404
Target Start/End: Original strand, 23710500 - 23710545
Alignment:
Q  359 cattaattagagggcataattgtaaaagtttacattgaaaagtgaa 404  Q
    |||||||||||||| |||||||||||| |||||||| |||||||||    
T  23710500 cattaattagagggtataattgtaaaaatttacattaaaaagtgaa 23710545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 290 - 339
Target Start/End: Original strand, 19451124 - 19451173
Alignment:
Q  290 tccctccatttaaaaatgagtgttgtttaaggtttttgcacacatattaa 339  Q
    ||||||| ||| ||||||| |||||||||| |||||| ||||||||||||    
T  19451124 tccctccgtttcaaaatgaatgttgtttaaagtttttacacacatattaa 19451173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 359 - 404
Target Start/End: Original strand, 42116646 - 42116691
Alignment:
Q  359 cattaattagagggcataattgtaaaagtttacattgaaaagtgaa 404  Q
    |||||||||||  | ||||||||||||||||| |||||||||||||    
T  42116646 cattaattagaatgtataattgtaaaagtttatattgaaaagtgaa 42116691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 287 - 339
Target Start/End: Original strand, 7905923 - 7905975
Alignment:
Q  287 tactccctccatttaaaaatgagtgttgtttaaggtttttgcacacatattaa 339  Q
    |||||||||| ||| ||||||||||| |||| |||| ||| ||||||||||||    
T  7905923 tactccctccgttttaaaatgagtgtcgttttaggtgtttacacacatattaa 7905975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 287 - 339
Target Start/End: Complemental strand, 41496445 - 41496393
Alignment:
Q  287 tactccctccatttaaaaatgagtgttgtttaaggtttttgcacacatattaa 339  Q
    |||||| ||||||| ||||||| | | ||||||||||||| ||||||||||||    
T  41496445 tactccttccattttaaaatgaatatcgtttaaggtttttacacacatattaa 41496393  T

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Target: chr2 (Bit Score: 49; Significance: 9e-19; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 284 - 356
Target Start/End: Original strand, 681676 - 681747
Alignment:
Q  284 aagtactccctccatttaaaaatgagtgttgtttaaggtttttgcacacatattaacaaaatgcaataaagtt 356  Q
    ||||||||||||| ||| ||||||||||| ||||||||||||||||||||||||||  |||||||||||||||    
T  681676 aagtactccctccgtttcaaaatgagtgtcgtttaaggtttttgcacacatattaa-gaaatgcaataaagtt 681747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 359 - 419
Target Start/End: Original strand, 681850 - 681910
Alignment:
Q  359 cattaattagagggcataattgtaaaagtttacattgaaaagtgaatatgacattcatttt 419  Q
    |||||||||||||||||||||||||||||||  ||||||||||||| ||||||||||||||    
T  681850 cattaattagagggcataattgtaaaagtttgtattgaaaagtgaacatgacattcatttt 681910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 286 - 339
Target Start/End: Original strand, 11188161 - 11188214
Alignment:
Q  286 gtactccctccatttaaaaatgagtgttgtttaaggtttttgcacacatattaa 339  Q
    ||||||||||| ||| ||||||| ||| |||||||||| || ||||||||||||    
T  11188161 gtactccctccgtttcaaaatgaatgtcgtttaaggttcttacacacatattaa 11188214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 290 - 339
Target Start/End: Original strand, 37038685 - 37038734
Alignment:
Q  290 tccctccatttaaaaatgagtgttgtttaaggtttttgcacacatattaa 339  Q
    ||||||| ||| ||||||||||| ||||||| ||||| ||||||||||||    
T  37038685 tccctccgtttcaaaatgagtgtcgtttaagatttttacacacatattaa 37038734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 287 - 339
Target Start/End: Original strand, 4658145 - 4658196
Alignment:
Q  287 tactccctccatttaaaaatgagtgttgtttaaggtttttgcacacatattaa 339  Q
    ||||| |||||||| ||||||||||| |||||| |||||| ||||||||||||    
T  4658145 tactcactccatttcaaaatgagtgtcgtttaa-gtttttacacacatattaa 4658196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 287 - 339
Target Start/End: Complemental strand, 45423848 - 45423796
Alignment:
Q  287 tactccctccatttaaaaatgagtgttgtttaaggtttttgcacacatattaa 339  Q
    |||||||||||||| ||||||| ||| ||||||  ||||| ||||||||||||    
T  45423848 tactccctccattttaaaatgaatgtcgtttaaaatttttacacacatattaa 45423796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 358 - 420
Target Start/End: Original strand, 35908413 - 35908475
Alignment:
Q  358 ccattaattagagggcataattgtaaaagtttacattgaaaagtgaatatgacattcattttg 420  Q
    ||||||||||||||||| ||||||||||| || |||||||||||||| |||||||||||||||    
T  35908413 ccattaattagagggcacaattgtaaaagcttgcattgaaaagtgaacatgacattcattttg 35908475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 279 - 352
Target Start/End: Complemental strand, 22699647 - 22699575
Alignment:
Q  279 ctaataagtactccctccatttaaaaatgagtgttgtttaaggtttttgcacacatattaacaaaatgcaataa 352  Q
    |||| ||||| ||||||| ||| ||||||||||| |||||||||| || ||||||||||||  |||||||||||    
T  22699647 ctaaaaagtaatccctccgtttcaaaatgagtgtcgtttaaggttgttccacacatattaa-gaaatgcaataa 22699575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 287 - 339
Target Start/End: Complemental strand, 12339952 - 12339900
Alignment:
Q  287 tactccctccatttaaaaatgagtgttgtttaaggtttttgcacacatattaa 339  Q
    |||||| ||||||| ||||||| ||| ||||||||||||| ||||||||||||    
T  12339952 tactccgtccatttcaaaatgaatgtcgtttaaggtttttacacacatattaa 12339900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 302 - 348
Target Start/End: Original strand, 6115932 - 6115977
Alignment:
Q  302 aaaatgagtgttgtttaaggtttttgcacacatattaacaaaatgca 348  Q
    ||||||||||| ||||||||||||| |||||||||||| ||||||||    
T  6115932 aaaatgagtgtcgtttaaggtttttacacacatattaa-aaaatgca 6115977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 281 - 339
Target Start/End: Original strand, 9419980 - 9420038
Alignment:
Q  281 aataagtactccctccatttaaaaatgagtgttgtttaaggtttttgcacacatattaa 339  Q
    ||||| |||||||||| ||| ||||||||||| |||||| ||| || ||||||||||||    
T  9419980 aataactactccctccgtttcaaaatgagtgtcgtttaaagttgttccacacatattaa 9420038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 371 - 420
Target Start/End: Original strand, 1162507 - 1162556
Alignment:
Q  371 ggcataattgtaaaagtttacattgaaaagtgaatatgacattcattttg 420  Q
    |||||||||||||||||||||||| | || |||| |||| ||||||||||    
T  1162507 ggcataattgtaaaagtttacattaagaaatgaacatgatattcattttg 1162556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 286 - 339
Target Start/End: Original strand, 24245129 - 24245182
Alignment:
Q  286 gtactccctccatttaaaaatgagtgttgtttaaggtttttgcacacatattaa 339  Q
    ||||||||||| ||| ||||||| ||| ||||||| ||||| ||||||||||||    
T  24245129 gtactccctccgtttcaaaatgaatgtcgtttaagatttttacacacatattaa 24245182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 287 - 339
Target Start/End: Complemental strand, 7612737 - 7612685
Alignment:
Q  287 tactccctccatttaaaaatgagtgttgtttaaggtttttgcacacatattaa 339  Q
    |||||||||||||| ||||||||||||| || || |||| ||||||| |||||    
T  7612737 tactccctccattttaaaatgagtgttgctttagattttggcacacagattaa 7612685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 287 - 339
Target Start/End: Original strand, 13367863 - 13367915
Alignment:
Q  287 tactccctccatttaaaaatgagtgttgtttaaggtttttgcacacatattaa 339  Q
    |||||||||| ||| ||||| | | ||||||||||||||| ||||||||||||    
T  13367863 tactccctccgtttcaaaataaatattgtttaaggtttttacacacatattaa 13367915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 287 - 339
Target Start/End: Original strand, 39765783 - 39765835
Alignment:
Q  287 tactccctccatttaaaaatgagtgttgtttaaggtttttgcacacatattaa 339  Q
    |||||||||| ||| ||||||||||| |||| |||| ||| ||||||||||||    
T  39765783 tactccctccgtttcaaaatgagtgtcgttttaggtgtttacacacatattaa 39765835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 6e-17; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 287 - 348
Target Start/End: Complemental strand, 27209605 - 27209545
Alignment:
Q  287 tactccctccatttaaaaatgagtgttgtttaaggtttttgcacacatattaacaaaatgca 348  Q
    |||||||||||||| ||||||||||||||||||||||||| |||||||||||| ||||||||    
T  27209605 tactccctccatttcaaaatgagtgttgtttaaggtttttacacacatattaa-aaaatgca 27209545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 359 - 418
Target Start/End: Original strand, 19563843 - 19563902
Alignment:
Q  359 cattaattagagggcataattgtaaaagtttacattgaaaagtgaatatgacattcattt 418  Q
    ||||||||| |||  ||||||||||||||||||||| ||||||||| ||| |||||||||    
T  19563843 cattaattaaaggatataattgtaaaagtttacattaaaaagtgaacatgtcattcattt 19563902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 287 - 339
Target Start/End: Original strand, 26594980 - 26595032
Alignment:
Q  287 tactccctccatttaaaaatgagtgttgtttaaggtttttgcacacatattaa 339  Q
    |||||||||| ||| ||||||| ||| ||||||||||||| ||||||||||||    
T  26594980 tactccctccgtttcaaaatgaatgtcgtttaaggtttttacacacatattaa 26595032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 287 - 345
Target Start/End: Complemental strand, 25009863 - 25009805
Alignment:
Q  287 tactccctccatttaaaaatgagtgttgtttaaggtttttgcacacatattaacaaaat 345  Q
    |||||||||||||| |||||||| || |||||| ||||||  ||||||||||| |||||    
T  25009863 tactccctccattttaaaatgagcgtcgtttaacgtttttatacacatattaaaaaaat 25009805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 287 - 339
Target Start/End: Original strand, 14593268 - 14593318
Alignment:
Q  287 tactccctccatttaaaaatgagtgttgtttaaggtttttgcacacatattaa 339  Q
    |||||||||| ||| |||||||||||||||| ||||||||  |||||||||||    
T  14593268 tactccctccgttttaaaatgagtgttgttttaggttttt--acacatattaa 14593318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 287 - 339
Target Start/End: Original strand, 1430448 - 1430500
Alignment:
Q  287 tactccctccatttaaaaatgagtgttgtttaaggtttttgcacacatattaa 339  Q
    |||||||||||||| ||||||||||| |||| |||| || ||||||| |||||    
T  1430448 tactccctccattttaaaatgagtgtcgttttaggtgttggcacacagattaa 1430500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 287 - 339
Target Start/End: Complemental strand, 29568136 - 29568084
Alignment:
Q  287 tactccctccatttaaaaatgagtgttgtttaaggtttttgcacacatattaa 339  Q
    |||||| ||| ||| ||||||| ||| ||||||||||||| ||||||||||||    
T  29568136 tactccatccgtttcaaaatgaatgtcgtttaaggtttttacacacatattaa 29568084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 284 - 348
Target Start/End: Complemental strand, 7736618 - 7736554
Alignment:
Q  284 aagtactccctccatttaaaaatgagtgttgtttaaggtttttgcacacatattaacaaaatgca 348  Q
    ||||||||||||||||| ||||||| ||| ||||||| ||||| |||||||||||| ||||||||    
T  7736618 aagtactccctccatttcaaaatgaatgtcgtttaagatttttacacacatattaaaaaaatgca 7736554  T

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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 359 - 418
Target Start/End: Complemental strand, 13123593 - 13123534
Alignment:
Q  359 cattaattagagggcataattgtaaaagtttacattgaaaagtgaatatgacattcattt 418  Q
    |||| ||| ||||||||||||| |||||||| |||||||||||||| |||||||||||||    
T  13123593 cattcatttgagggcataattggaaaagtttccattgaaaagtgaacatgacattcattt 13123534  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 287 - 339
Target Start/End: Complemental strand, 4631160 - 4631108
Alignment:
Q  287 tactccctccatttaaaaatgagtgttgtttaaggtttttgcacacatattaa 339  Q
    |||||||||| ||| ||||||||||| |||| |||| ||| ||||||||||||    
T  4631160 tactccctccgtttcaaaatgagtgtcgttttaggtgtttacacacatattaa 4631108  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 287 - 339
Target Start/End: Original strand, 10344855 - 10344907
Alignment:
Q  287 tactccctccatttaaaaatgagtgttgtttaaggtttttgcacacatattaa 339  Q
    |||||||||| ||| ||||||||||| |||| |||| ||| ||||||||||||    
T  10344855 tactccctccgtttcaaaatgagtgtcgttttaggtctttacacacatattaa 10344907  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 287 - 339
Target Start/End: Complemental strand, 11977828 - 11977776
Alignment:
Q  287 tactccctccatttaaaaatgagtgttgtttaaggtttttgcacacatattaa 339  Q
    |||||| ||| ||| ||||||||||| ||||||| ||||| ||||||||||||    
T  11977828 tactccatccgtttcaaaatgagtgtcgtttaagctttttacacacatattaa 11977776  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000005; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 284 - 339
Target Start/End: Complemental strand, 48843798 - 48843743
Alignment:
Q  284 aagtactccctccatttaaaaatgagtgttgtttaaggtttttgcacacatattaa 339  Q
    ||||||||||| ||||| ||||||||||| ||||||||||||| || |||||||||    
T  48843798 aagtactcccttcattttaaaatgagtgtcgtttaaggtttttacatacatattaa 48843743  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 287 - 327
Target Start/End: Complemental strand, 34733549 - 34733509
Alignment:
Q  287 tactccctccatttaaaaatgagtgttgtttaaggtttttg 327  Q
    |||||||||||||| | ||||||||||||||||||||||||    
T  34733549 tactccctccatttcacaatgagtgttgtttaaggtttttg 34733509  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 287 - 339
Target Start/End: Original strand, 44057532 - 44057584
Alignment:
Q  287 tactccctccatttaaaaatgagtgttgtttaaggtttttgcacacatattaa 339  Q
    |||||||||| ||| ||||||||||||||||||| ||||| |||||| |||||    
T  44057532 tactccctccgtttcaaaatgagtgttgtttaagatttttacacacaaattaa 44057584  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 297 - 348
Target Start/End: Original strand, 8292989 - 8293040
Alignment:
Q  297 atttaaaaatgagtgttgtttaaggtttttgcacacatattaacaaaatgca 348  Q
    |||| ||||||| |||||||||||||||||||| || |||||| ||||||||    
T  8292989 atttcaaaatgaatgttgtttaaggtttttgcatacgtattaaaaaaatgca 8293040  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 287 - 339
Target Start/End: Complemental strand, 4268972 - 4268920
Alignment:
Q  287 tactccctccatttaaaaatgagtgttgtttaaggtttttgcacacatattaa 339  Q
    ||||||| || ||| ||||||| ||| ||||||||||||| ||||||||||||    
T  4268972 tactcccgccgttttaaaatgaatgtcgtttaaggtttttacacacatattaa 4268920  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 360 - 420
Target Start/End: Complemental strand, 31929374 - 31929315
Alignment:
Q  360 attaattagagggcataattgtaaaagtttacattgaaaagtgaatatgacattcattttg 420  Q
    |||||||||||| ||||||||||||| ||||  ||||||||| || || ||||||||||||    
T  31929374 attaattagaggacataattgtaaaattttatgttgaaaagtaaacat-acattcattttg 31929315  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 287 - 339
Target Start/End: Complemental strand, 42286138 - 42286086
Alignment:
Q  287 tactccctccatttaaaaatgagtgttgtttaaggtttttgcacacatattaa 339  Q
    |||||||||| ||| ||||||| ||| ||||||||||||| || |||||||||    
T  42286138 tactccctccgttttaaaatgaatgtcgtttaaggtttttacaaacatattaa 42286086  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 287 - 335
Target Start/End: Original strand, 12459231 - 12459279
Alignment:
Q  287 tactccctccatttaaaaatgagtgttgtttaaggtttttgcacacata 335  Q
    |||| ||||| ||||||||||| ||||||||||||||||| ||||||||    
T  12459231 tacttcctccgtttaaaaatgaatgttgtttaaggtttttacacacata 12459279  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 287 - 339
Target Start/End: Complemental strand, 32429517 - 32429465
Alignment:
Q  287 tactccctccatttaaaaatgagtgttgtttaaggtttttgcacacatattaa 339  Q
    |||||||||| ||| |||||||||||||||| |||| ||| ||||||||||||    
T  32429517 tactccctccgtttcaaaatgagtgttgttttaggtgtttacacacatattaa 32429465  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 287 - 352
Target Start/End: Original strand, 26405188 - 26405252
Alignment:
Q  287 tactccctccatttaaaaatgagtgttgtttaaggtttttgcacacatattaacaaaatgcaataa 352  Q
    |||||| ||| ||| ||||||||||| |||||||||| || ||||||||||||  |||||||||||    
T  26405188 tactccatccgtttcaaaatgagtgtggtttaaggttgttacacacatattaa-taaatgcaataa 26405252  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 287 - 339
Target Start/End: Original strand, 21271315 - 21271367
Alignment:
Q  287 tactccctccatttaaaaatgagtgttgtttaaggtttttgcacacatattaa 339  Q
    |||||||||  ||| ||||||| ||| ||||||||||||| ||||||||||||    
T  21271315 tactccctctgtttcaaaatgaatgtcgtttaaggtttttacacacatattaa 21271367  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 287 - 339
Target Start/End: Complemental strand, 29915783 - 29915731
Alignment:
Q  287 tactccctccatttaaaaatgagtgttgtttaaggtttttgcacacatattaa 339  Q
    |||||||||| ||| ||||||| |||||||| |||| || |||||||||||||    
T  29915783 tactccctccgtttcaaaatgaatgttgttttaggtgttggcacacatattaa 29915731  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 287 - 339
Target Start/End: Complemental strand, 19897528 - 19897476
Alignment:
Q  287 tactccctccatttaaaaatgagtgttgtttaaggtttttgcacacatattaa 339  Q
    |||||||||  ||| |||||||||||||||||||||| || ||||||||||||    
T  19897528 tactccctctgttttaaaatgagtgttgtttaaggttgttacacacatattaa 19897476  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 287 - 338
Target Start/End: Original strand, 11337532 - 11337583
Alignment:
Q  287 tactccctccatttaaaaatgagtgttgtttaaggtttttgcacacatatta 338  Q
    |||||| ||||||| ||||||| ||| ||||||||||||| |||||||||||    
T  11337532 tactccttccatttcaaaatgaatgtcgtttaaggtttttacacacatatta 11337583  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 372 - 419
Target Start/End: Original strand, 35461987 - 35462034
Alignment:
Q  372 gcataattgtaaaagtttacattgaaaagtgaatatgacattcatttt 419  Q
    |||||||| |||||||||| |||||||| ||||||| |||||||||||    
T  35461987 gcataattataaaagtttatattgaaaaatgaatataacattcatttt 35462034  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 286 - 339
Target Start/End: Complemental strand, 19115615 - 19115564
Alignment:
Q  286 gtactccctccatttaaaaatgagtgttgtttaaggtttttgcacacatattaa 339  Q
    ||||||||||||||| |||||||||||||||| |||| |||  |||||||||||    
T  19115615 gtactccctccattttaaaatgagtgttgttttaggtgttt--acacatattaa 19115564  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 358 - 418
Target Start/End: Original strand, 383186 - 383247
Alignment:
Q  358 ccattaattagagggcataattgtaaaagtttacattg-aaaagtgaatatgacattcattt 418  Q
    ||||||||||||||||||||| |||||| | |  |||| ||||||||| |||||||||||||    
T  383186 ccattaattagagggcataatagtaaaaatctgaattgaaaaagtgaacatgacattcattt 383247  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 287 - 344
Target Start/End: Complemental strand, 4759520 - 4759463
Alignment:
Q  287 tactccctccatttaaaaatgagtgttgtttaaggtttttgcacacatattaacaaaa 344  Q
    |||||||||||||| ||||||||||| |||| |||| |||  ||||||||||| ||||    
T  4759520 tactccctccattttaaaatgagtgtcgttttaggtgtttatacacatattaagaaaa 4759463  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 286 - 339
Target Start/End: Original strand, 36844651 - 36844704
Alignment:
Q  286 gtactccctccatttaaaaatgagtgttgtttaaggtttttgcacacatattaa 339  Q
    ||||||||||| ||| ||||||| ||| |||||||||||||  |||||||||||    
T  36844651 gtactccctccgtttcaaaatgaatgtcgtttaaggtttttagacacatattaa 36844704  T

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Target: scaffold0026 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 287 - 339
Target Start/End: Complemental strand, 4381 - 4329
Alignment:
Q  287 tactccctccatttaaaaatgagtgttgtttaaggtttttgcacacatattaa 339  Q
    ||||| |||| ||| ||||||| | ||||||||||||||| ||||||||||||    
T  4381 tactctctccgttttaaaatgaattttgtttaaggtttttacacacatattaa 4329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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