View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12235_low_1 (Length: 723)
Name: NF12235_low_1
Description: NF12235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12235_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 589; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 589; E-Value: 0
Query Start/End: Original strand, 1 - 716
Target Start/End: Original strand, 4236143 - 4236867
Alignment:
| Q |
1 |
gcatcgtttgttccatctccagttacagcaactacatgacctttttgttttaagcattgtaccattagaagtttatcaaaaggagaagaccttgccatca |
100 |
Q |
| |
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|||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| |
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| T |
4236143 |
gcatcgtttgttccgtctccggttacagcaactacatgacctttttgttttaagcattgtaccattagaagtttatcaaatggagaagatcttgccatca |
4236242 |
T |
|
| Q |
101 |
cagatattttctcaactttcgccaacctctcttcgtgtgtgaagttacgaaattgttcaccttcaaccactgtttcatctgtgtcctgatttggttgaag |
200 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |||||||| |
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| T |
4236243 |
cagagattttctcaactttcgccaacctctcttcgtgtgtgaagttacgaaattgttcgccttcaaccactgtttcatccgtgtcctgattaggttgaag |
4236342 |
T |
|
| Q |
201 |
aattccgcattcaaatgctatagcttttgcagtgaaaacattatcacctgtcatcagagataaagttagttaatagtcaattaagaattagtta------ |
294 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| || |||||| || |||||| |
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| T |
4236343 |
aattccacattcaaatgctatagcttttgcagtgaaaacattgtcacctgtcatcagagataaagtatgttaatggttaattaacaactagttaggttaa |
4236442 |
T |
|
| Q |
295 |
---ttcttattatcttcttcgtattcatatagactcgtatgtataaatagagaattttatattatcaagttatcgataaataagatattttagtaatacc |
391 |
Q |
| |
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|||||||||| ||| || | | ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4236443 |
ctattcttattatattcatcatttccatataggctcgtatgtataaatagagaattttatattatcaagttatcgataaataagatattttagtaatacc |
4236542 |
T |
|
| Q |
392 |
tgtaatcattttgacattcacaccagcatgttggcaagcttccactgccgtcttcacccccgggcgacatggatccttaatgcctacaagtcctaacaat |
491 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4236543 |
tgtaatcattttgacattcacaccagcatgttggcaagcttccactgtcgtcttcacccccgggcgacatggatccttaatgcctacaagtcctaacaat |
4236642 |
T |
|
| Q |
492 |
gttaaaccattgtcttttaccaccatcttgttcatatctccttcaacttcaagctcttcgtctgtaacttttgtatacgctaaagcgatgcaacgaagac |
591 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4236643 |
gttaaaccattgtcttttaccaccatcttgttcatatctccttcaacttcaagctcttcgtctgtaacttttgtatacgctaaagcgatgcaacgaagac |
4236742 |
T |
|
| Q |
592 |
tactagccgccataccttgaataatcctttcgaatttcaacatggtttcattgtcaagatctttcgaaattccaaaacgatcatggtattttgagcacat |
691 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| |
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|
| T |
4236743 |
tactagccgccataccttgaataatcctttcgaatttcaacatggtttcattgtcaagatctttcgaaattccaaaaccatcatggtattttgaacacat |
4236842 |
T |
|
| Q |
692 |
tcttagtaccatctctgctcctcct |
716 |
Q |
| |
|
||||||||||||||||||| ||||| |
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|
| T |
4236843 |
tcttagtaccatctctgctgctcct |
4236867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 355 - 394
Target Start/End: Complemental strand, 37067926 - 37067887
Alignment:
| Q |
355 |
atcaagttatcgataaataagatattttagtaatacctgt |
394 |
Q |
| |
|
||||||||||| |||||| ||||||||||||||||||||| |
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|
| T |
37067926 |
atcaagttatcaataaatgagatattttagtaatacctgt |
37067887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 356 - 394
Target Start/End: Complemental strand, 37060449 - 37060411
Alignment:
| Q |
356 |
tcaagttatcgataaataagatattttagtaatacctgt |
394 |
Q |
| |
|
|||||||||| |||||| ||||||||||||||||||||| |
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|
| T |
37060449 |
tcaagttatcaataaatgagatattttagtaatacctgt |
37060411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 210; Significance: 1e-114; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 210; E-Value: 1e-114
Query Start/End: Original strand, 367 - 716
Target Start/End: Original strand, 6185611 - 6185960
Alignment:
| Q |
367 |
ataaataagatattttagtaatacctgtaatcattttgacattcacaccagcatgttggcaagcttccactgccgtcttcacccccgggcgacatggatc |
466 |
Q |
| |
|
|||||| ||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| || ||||||||||| |||||||||||||| |
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| T |
6185611 |
ataaatgagatattatagtaatacctgtaatcattttgacattcacaccggcatgttggcaagcttccaccgctgtcttcacccctgggcgacatggatc |
6185710 |
T |
|
| Q |
467 |
cttaatgcctacaagtcctaacaatgttaaaccattgtcttttaccaccatcttgttcatatctccttcaacttcaagctcttcgtctgtaacttttgta |
566 |
Q |
| |
|
||||||||| ||||||||||||||||||||| |||| |||||||||||||||||| | | ||||||||| | | |||| |||||||| |||| |||| |
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|
| T |
6185711 |
cttaatgccgacaagtcctaacaatgttaaatcattctcttttaccaccatcttggtgttgtctccttcatgtcctagcttttcgtctgagacttctgta |
6185810 |
T |
|
| Q |
567 |
tacgctaaagcgatgcaacgaagactactagccgccataccttgaataatcctttcgaatttcaacatggtttcattgtcaagatctttcgaaattccaa |
666 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| ||| | ||||||||||||||||||| |||||||| |
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| T |
6185811 |
cacgctaaagcgatgcaacgaagactactagctgccataccttgaataatgctttcgaatttcagcatagattcattgtcaagatctttcaaaattccat |
6185910 |
T |
|
| Q |
667 |
aacgatcatggtattttgagcacattcttagtaccatctctgctcctcct |
716 |
Q |
| |
|
||| ||||| |||| |||| |||||||||||||||||||| ||| ||||| |
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|
| T |
6185911 |
aaccatcatagtatcttgaacacattcttagtaccatctcggctgctcct |
6185960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 157; E-Value: 4e-83
Query Start/End: Original strand, 1 - 249
Target Start/End: Original strand, 6185267 - 6185515
Alignment:
| Q |
1 |
gcatcgtttgttccatctccagttacagcaactacatgacctttttgttttaagcattgtaccattagaagtttatcaaaaggagaagaccttgccatca |
100 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||| || |||||||||| |
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|
| T |
6185267 |
gcatcgtttgttccatctcctgttacagcaactacatgacctttttgttttaagcattgaaccattagaagtttgtcaaatggagatgatcttgccatca |
6185366 |
T |
|
| Q |
101 |
cagatattttctcaactttcgccaacctctcttcgtgtgtgaagttacgaaattgttcaccttcaaccactgtttcatctgtgtcctgatttggttgaag |
200 |
Q |
| |
|
|| ||||||| ||||| || | || ||||||||||| || ||||| ||||||||||| ||||||||||| ||||||||| |||||||||| |||||||| |
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|
| T |
6185367 |
cacatattttttcaaccttttctaatctctcttcgtgcgtaaagttgcgaaattgttcgccttcaaccaccgtttcatctatgtcctgattaggttgaag |
6185466 |
T |
|
| Q |
201 |
aattccgcattcaaatgctatagcttttgcagtgaaaacattatcacct |
249 |
Q |
| |
|
|||||| |||||||||||||||||||| |||||||||||||| |||||| |
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|
| T |
6185467 |
aattccacattcaaatgctatagctttcgcagtgaaaacattgtcacct |
6185515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 620 - 716
Target Start/End: Original strand, 21847622 - 21847718
Alignment:
| Q |
620 |
ttcgaatttcaacatggtttcattgtcaagatctttcgaaattccaaaacgatcatggtattttgagcacattcttagtaccatctctgctcctcct |
716 |
Q |
| |
|
||||||||||||||| | | ||||||||||||||||| |||||||| | | | | ||| |||| |||||||||||||||||||||||| ||||| |
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| T |
21847622 |
ttcgaatttcaacatagatccattgtcaagatctttcaaaattccacagccaatgtaatatcttgaacacattcttagtaccatctctgcttctcct |
21847718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000007; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 355 - 394
Target Start/End: Original strand, 402298 - 402337
Alignment:
| Q |
355 |
atcaagttatcgataaataagatattttagtaatacctgt |
394 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
402298 |
atcaagttatcgataaatgagatattttagtaatacctgt |
402337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 281 - 343
Target Start/End: Complemental strand, 45369992 - 45369930
Alignment:
| Q |
281 |
ttaagaattagttattcttattatcttcttcgtattcatatagactcgtatgtataaatagag |
343 |
Q |
| |
|
||||||||||||||| ||| ||||| | ||| | ||||||| ||||| ||||||||||||||| |
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|
| T |
45369992 |
ttaagaattagttatccttgttatccttttcattttcatatggactcatatgtataaatagag |
45369930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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