View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12235_low_10 (Length: 446)

Name: NF12235_low_10
Description: NF12235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12235_low_10
NF12235_low_10
[»] chr4 (40 HSPs)
chr4 (24-274)||(38433952-38434200)
chr4 (20-274)||(24538014-24538263)
chr4 (20-123)||(37371260-37371363)
chr4 (21-182)||(55343870-55344015)
chr4 (20-112)||(30913653-30913745)
chr4 (158-274)||(37371135-37371251)
chr4 (23-124)||(53370251-53370352)
chr4 (20-118)||(30912726-30912823)
chr4 (24-123)||(25493944-25494040)
chr4 (20-124)||(49263097-49263200)
chr4 (347-402)||(37371003-37371058)
chr4 (20-124)||(45666433-45666533)
chr4 (22-126)||(53393456-53393557)
chr4 (20-124)||(1821450-1821551)
chr4 (340-389)||(24537900-24537949)
chr4 (20-124)||(34031882-34031982)
chr4 (20-124)||(46195874-46195975)
chr4 (20-123)||(54982634-54982734)
chr4 (19-124)||(2492949-2493052)
chr4 (197-264)||(45635041-45635106)
chr4 (19-103)||(47353923-47354007)
chr4 (19-124)||(24074016-24074118)
chr4 (241-274)||(1821181-1821214)
chr4 (20-120)||(19443432-19443529)
chr4 (217-274)||(55344035-55344092)
chr4 (65-124)||(6949277-6949336)
chr4 (241-272)||(6949506-6949537)
chr4 (352-399)||(8077788-8077835)
chr4 (243-274)||(17330896-17330927)
chr4 (341-399)||(38433827-38433885)
chr4 (241-274)||(9808095-9808128)
chr4 (241-274)||(24073445-24073478)
chr4 (241-274)||(37209656-37209689)
chr4 (241-274)||(41503037-41503070)
chr4 (245-274)||(46430513-46430542)
chr4 (241-274)||(47944067-47944100)
chr4 (241-274)||(50721411-50721444)
chr4 (241-273)||(19443154-19443186)
chr4 (72-124)||(38044771-38044823)
chr4 (72-124)||(47944338-47944390)
[»] chr6 (23 HSPs)
chr6 (20-274)||(21527031-21527283)
chr6 (20-274)||(7972369-7972617)
chr6 (20-120)||(6110984-6111084)
chr6 (20-123)||(23410588-23410691)
chr6 (20-90)||(9095657-9095727)
chr6 (20-124)||(8460964-8461070)
chr6 (20-89)||(4184786-4184855)
chr6 (20-89)||(4665990-4666065)
chr6 (45-124)||(34889194-34889273)
chr6 (20-116)||(25056607-25056700)
chr6 (340-393)||(6026615-6026668)
chr6 (340-401)||(21526903-21526964)
chr6 (348-402)||(7972240-7972294)
chr6 (241-274)||(2437336-2437369)
chr6 (76-124)||(8049337-8049385)
chr6 (73-124)||(14093646-14093697)
chr6 (122-187)||(4184999-4185062)
chr6 (122-187)||(4666209-4666272)
chr6 (23-85)||(26252488-26252550)
chr6 (241-274)||(8049834-8049867)
chr6 (241-274)||(14093321-14093354)
chr6 (245-274)||(25057045-25057074)
chr6 (241-274)||(26252119-26252152)
[»] chr7 (40 HSPs)
chr7 (20-274)||(4962661-4962913)
chr7 (20-274)||(14771141-14771393)
chr7 (20-274)||(15221593-15221845)
chr7 (21-274)||(25290731-25290982)
chr7 (32-130)||(39432735-39432833)
chr7 (20-274)||(46671746-46671994)
chr7 (20-124)||(15643465-15643569)
chr7 (122-273)||(4678740-4678889)
chr7 (139-274)||(39434325-39434459)
chr7 (199-274)||(24393807-24393882)
chr7 (23-124)||(4567421-4567519)
chr7 (32-92)||(39430488-39430548)
chr7 (19-102)||(42509667-42509750)
chr7 (22-91)||(1719789-1719858)
chr7 (199-274)||(15643589-15643664)
chr7 (342-400)||(46671617-46671676)
chr7 (347-401)||(4962534-4962588)
chr7 (340-400)||(25291048-25291109)
chr7 (119-233)||(39430365-39430476)
chr7 (340-399)||(14771015-14771075)
chr7 (340-399)||(15221467-15221527)
chr7 (34-124)||(39427507-39427593)
chr7 (31-124)||(27723430-27723520)
chr7 (20-116)||(35792998-35793091)
chr7 (340-401)||(39434526-39434588)
chr7 (241-274)||(3835362-3835395)
chr7 (241-274)||(4567860-4567893)
chr7 (241-274)||(27723760-27723793)
chr7 (75-124)||(37124331-37124380)
chr7 (241-274)||(37124656-37124689)
chr7 (239-274)||(39430041-39430076)
chr7 (19-124)||(39617623-39617725)
chr7 (241-272)||(47541931-47541962)
chr7 (351-401)||(24393680-24393730)
chr7 (20-53)||(3835594-3835627)
chr7 (20-53)||(8614780-8614813)
chr7 (22-79)||(17269583-17269640)
chr7 (31-63)||(4678504-4678536)
chr7 (241-269)||(16197328-16197356)
chr7 (65-124)||(17269662-17269722)
[»] chr2 (43 HSPs)
chr2 (20-274)||(4959089-4959341)
chr2 (19-274)||(34424488-34424736)
chr2 (54-274)||(12412756-12412973)
chr2 (54-274)||(12424816-12425033)
chr2 (135-274)||(27746858-27746995)
chr2 (122-275)||(25965360-25965514)
chr2 (20-124)||(41541155-41541259)
chr2 (20-117)||(157953-158050)
chr2 (19-124)||(15507559-15507666)
chr2 (20-120)||(33659809-33659909)
chr2 (24-123)||(11084033-11084130)
chr2 (20-95)||(44898219-44898294)
chr2 (30-124)||(33024373-33024467)
chr2 (20-118)||(4316818-4316916)
chr2 (20-124)||(7486178-7486276)
chr2 (20-124)||(42872140-42872244)
chr2 (45-124)||(36243903-36243982)
chr2 (212-271)||(7485809-7485868)
chr2 (20-124)||(21252687-21252787)
chr2 (20-74)||(27746598-27746652)
chr2 (20-124)||(29408650-29408751)
chr2 (34-91)||(34847051-34847108)
chr2 (343-399)||(7485680-7485736)
chr2 (340-399)||(34424362-34424421)
chr2 (340-398)||(33660702-33660760)
chr2 (41-83)||(42758096-42758138)
chr2 (241-274)||(1397961-1397994)
chr2 (241-274)||(16806135-16806168)
chr2 (241-274)||(16845416-16845449)
chr2 (340-396)||(4958966-4959022)
chr2 (340-400)||(20170897-20170957)
chr2 (340-399)||(12413041-12413100)
chr2 (340-399)||(12425101-12425160)
chr2 (243-274)||(45271948-45271979)
chr2 (23-124)||(1397586-1397684)
chr2 (20-54)||(25965802-25965836)
chr2 (346-392)||(27747066-27747112)
chr2 (241-274)||(11084373-11084406)
chr2 (23-60)||(12411784-12411821)
chr2 (23-60)||(12423844-12423881)
chr2 (241-274)||(21253057-21253090)
chr2 (241-274)||(25713922-25713955)
chr2 (241-274)||(41541648-41541681)
[»] chr3 (43 HSPs)
chr3 (20-274)||(21959434-21959686)
chr3 (23-270)||(7259416-7259666)
chr3 (20-120)||(3751570-3751670)
chr3 (20-124)||(296562-296664)
chr3 (20-124)||(6512439-6512543)
chr3 (20-124)||(6749092-6749196)
chr3 (20-118)||(15638370-15638468)
chr3 (20-124)||(9588872-9588976)
chr3 (199-274)||(13779103-13779178)
chr3 (29-124)||(34824063-34824158)
chr3 (31-124)||(6472607-6472700)
chr3 (197-273)||(25841574-25841650)
chr3 (340-400)||(7259284-7259344)
chr3 (21-123)||(23701822-23701923)
chr3 (21-123)||(23720277-23720378)
chr3 (21-123)||(23738733-23738834)
chr3 (20-124)||(45759805-45759906)
chr3 (20-124)||(2093889-2093990)
chr3 (20-124)||(375852-375952)
chr3 (21-123)||(23772118-23772219)
chr3 (20-124)||(37030853-37030954)
chr3 (72-124)||(27817596-27817648)
chr3 (31-95)||(29556426-29556490)
chr3 (23-124)||(20841424-20841522)
chr3 (20-95)||(38750995-38751070)
chr3 (22-124)||(42735489-42735588)
chr3 (21-124)||(45646708-45646808)
chr3 (73-124)||(45667607-45667658)
chr3 (241-274)||(38750566-38750599)
chr3 (241-274)||(45647070-45647103)
chr3 (76-124)||(5493713-5493761)
chr3 (243-275)||(21916039-21916071)
chr3 (241-272)||(21934016-21934047)
chr3 (19-124)||(34668785-34668887)
chr3 (31-123)||(2440535-2440625)
chr3 (340-402)||(21933887-21933949)
chr3 (241-271)||(37030484-37030514)
chr3 (20-53)||(2599164-2599197)
chr3 (346-399)||(16236976-16237029)
chr3 (241-274)||(45667911-45667944)
chr3 (340-400)||(13779244-13779302)
chr3 (70-124)||(21934409-21934460)
chr3 (348-400)||(21959307-21959359)
[»] scaffold1130 (2 HSPs)
scaffold1130 (20-267)||(487-733)
scaffold1130 (348-400)||(815-867)
[»] chr8 (34 HSPs)
chr8 (20-274)||(3443431-3443683)
chr8 (20-274)||(9455345-9455593)
chr8 (63-274)||(2742651-2742862)
chr8 (47-182)||(7578000-7578133)
chr8 (20-124)||(1358767-1358871)
chr8 (20-124)||(34038997-34039098)
chr8 (22-117)||(16599223-16599318)
chr8 (19-117)||(43026542-43026640)
chr8 (37-124)||(35318835-35318921)
chr8 (19-124)||(16393810-16393912)
chr8 (340-390)||(7577822-7577872)
chr8 (20-124)||(7695148-7695249)
chr8 (23-120)||(25496759-25496853)
chr8 (20-100)||(3741763-3741843)
chr8 (65-124)||(5870924-5870983)
chr8 (20-95)||(29315774-29315849)
chr8 (23-124)||(11087241-11087339)
chr8 (23-120)||(25400580-25400673)
chr8 (340-385)||(3443318-3443363)
chr8 (66-123)||(34146355-34146412)
chr8 (340-396)||(9455659-9455715)
chr8 (34-124)||(36682665-36682751)
chr8 (243-274)||(1256347-1256378)
chr8 (351-402)||(2742532-2742583)
chr8 (241-272)||(3742211-3742242)
chr8 (19-100)||(30887759-30887837)
chr8 (348-399)||(34039464-34039515)
chr8 (33-67)||(14896763-14896797)
chr8 (340-402)||(35970059-35970121)
chr8 (241-274)||(7695005-7695038)
chr8 (366-399)||(34038819-34038852)
chr8 (241-274)||(34146747-34146780)
chr8 (241-274)||(38402014-38402047)
chr8 (79-123)||(1256571-1256615)
[»] scaffold0006 (3 HSPs)
scaffold0006 (20-246)||(46337-46562)
scaffold0006 (83-274)||(46027-46217)
scaffold0006 (348-400)||(45901-45953)
[»] chr5 (33 HSPs)
chr5 (64-274)||(17558120-17558328)
chr5 (20-272)||(16365838-16366074)
chr5 (20-272)||(32717715-32717961)
chr5 (75-274)||(14655144-14655335)
chr5 (20-124)||(19133341-19133444)
chr5 (197-274)||(20202117-20202194)
chr5 (122-274)||(36059662-36059812)
chr5 (20-124)||(19931940-19932042)
chr5 (23-120)||(39614946-39615043)
chr5 (20-150)||(6428342-6428468)
chr5 (20-124)||(19922241-19922344)
chr5 (20-124)||(18413248-18413349)
chr5 (23-124)||(36437228-36437326)
chr5 (31-95)||(14967651-14967715)
chr5 (20-124)||(8544617-8544718)
chr5 (20-116)||(17201344-17201437)
chr5 (340-401)||(20202261-20202322)
chr5 (20-124)||(19924991-19925094)
chr5 (33-124)||(249402-249490)
chr5 (19-95)||(10704527-10704603)
chr5 (19-124)||(1583563-1583664)
chr5 (340-399)||(17558394-17558453)
chr5 (20-63)||(20201767-20201810)
chr5 (340-395)||(32717593-32717648)
chr5 (20-91)||(43346584-43346655)
chr5 (20-124)||(42673959-42674060)
chr5 (241-274)||(6428561-6428594)
chr5 (340-399)||(248881-248940)
chr5 (244-274)||(1584179-1584209)
chr5 (20-117)||(11992078-11992172)
chr5 (241-275)||(17201988-17202022)
chr5 (241-271)||(32474648-32474678)
chr5 (241-273)||(19804236-19804268)
[»] chr1 (29 HSPs)
chr1 (20-187)||(788071-788242)
chr1 (20-124)||(1674642-1674746)
chr1 (23-124)||(31622978-31623079)
chr1 (20-124)||(1394720-1394824)
chr1 (24-95)||(11238130-11238201)
chr1 (20-116)||(19269841-19269937)
chr1 (199-274)||(11237705-11237780)
chr1 (210-274)||(31622889-31622953)
chr1 (197-274)||(23697528-23697605)
chr1 (22-124)||(4395929-4396036)
chr1 (340-399)||(1674238-1674297)
chr1 (199-273)||(1674364-1674438)
chr1 (72-122)||(41116669-41116719)
chr1 (197-264)||(2656147-2656212)
chr1 (20-100)||(23699305-23699385)
chr1 (241-274)||(32769469-32769502)
chr1 (35-92)||(33755604-33755661)
chr1 (241-274)||(41117464-41117497)
chr1 (347-399)||(11237580-11237632)
chr1 (235-274)||(786691-786730)
chr1 (241-274)||(11795574-11795607)
chr1 (241-274)||(13254258-13254291)
chr1 (19-52)||(23697658-23697691)
chr1 (241-274)||(36319551-36319584)
chr1 (20-53)||(39386798-39386831)
chr1 (241-274)||(52415627-52415660)
chr1 (340-397)||(52415728-52415785)
chr1 (19-63)||(37710401-37710445)
chr1 (70-124)||(40519094-40519145)
[»] scaffold0188 (1 HSPs)
scaffold0188 (20-117)||(6296-6393)
[»] scaffold0242 (2 HSPs)
scaffold0242 (20-100)||(14908-14988)
scaffold0242 (20-100)||(23743-23823)
[»] scaffold0005 (3 HSPs)
scaffold0005 (208-274)||(271973-272039)
scaffold0005 (340-390)||(271850-271900)
scaffold0005 (241-274)||(257262-257295)
[»] scaffold0097 (1 HSPs)
scaffold0097 (217-274)||(48596-48653)
[»] scaffold1327 (1 HSPs)
scaffold1327 (241-275)||(1251-1285)
[»] scaffold1986 (1 HSPs)
scaffold1986 (84-124)||(321-361)


Alignment Details
Target: chr4 (Bit Score: 163; Significance: 7e-87; HSPs: 40)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 163; E-Value: 7e-87
Query Start/End: Original strand, 24 - 274
Target Start/End: Complemental strand, 38434200 - 38433952
Alignment:
Q  24 tatctttaaatttaaacaaaattttgttacctatgataatagttccatgaagagttaaaattctataaataacatgagtagtacttgttaaaaatttcaa 123  Q
    |||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38434200 tatcttcaaatttaaacaaaattttgttaccgatgataatagttccatgaagagttaaaattctataaataacatgagtagtacttgttaaaaatttcaa 38434101  T
Q  124 gagatatccataatatttagaaaattggaaattgtgtttcttatgagagaaagataaagtgcgcnnnnnnntcgaaatttcttggagaaagatagtagta 223  Q
    ||||||| || |||||||||||||||||||||  ||||| ||||||||||||||||||| || |       ||| ||||| || |||||| | |||||||    
T  38434100 gagatatgcacaatatttagaaaattggaaat--tgtttgttatgagagaaagataaagcgcacaaagaaatcggaatttgttagagaaatagagtagta 38434003  T
Q  224 actaacaattctttgttacatattaaatttattggaaagataaagtgtgtg 274  Q
    ||| |||||| ||||||||||||||||||||||||||||||||||||||||    
T  38434002 actcacaattgtttgttacatattaaatttattggaaagataaagtgtgtg 38433952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 20 - 274
Target Start/End: Complemental strand, 24538263 - 24538014
Alignment:
Q  20 ttgttatctttaaatttaaacaaaattttgttacctatgataatagttccatgaagagttaaaattctataaataacatgagtagtacttgttaaaaatt 119  Q
    ||||||||||  |||| |||||||||||||||||||||||||||    ||||||||| ||||||||||||||||||||||||||||| ||||||||||||    
T  24538263 ttgttatcttcgaattcaaacaaaattttgttacctatgataatc---ccatgaagacttaaaattctataaataacatgagtagtaattgttaaaaatt 24538167  T
Q  120 tcaagagatatccataatatttagaaaattggaaattgtgtttcttatgagagaaagataaagtgcgc-nnnnnnntcgaaatttcttggagaaagatag 218  Q
    ||||||||||| || |||||||| ||||||||||||  ||||| ||||||||||||||||||| || |        ||| ||||| ||||||||||| ||    
T  24538166 tcaagagatatgcacaatattta-aaaattggaaat--tgtttgttatgagagaaagataaagcgcacaaaaaaaatcggaatttgttggagaaagagag 24538070  T
Q  219 tagtaactaacaattctttgttacatattaaatttattggaaagataaagtgtgtg 274  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  24538069 tagtaactaacaattgtttgttacatattaaatttattggaaagataaagtgtgtg 24538014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 20 - 123
Target Start/End: Complemental strand, 37371363 - 37371260
Alignment:
Q  20 ttgttatctttaaatttaaacaaaattttgttacctatgataatagttccatgaagagttaaaattctataaataacatgagtagtacttgttaaaaatt 119  Q
    |||||||||| ||||||||| ||||||||||||| | |||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  37371363 ttgttatcttcaaatttaaataaaattttgttacttgtgataatagttctatgaaaagttaaaattctataaataacatgagtagtacttgttaaaaatt 37371264  T
Q  120 tcaa 123  Q
    ||||    
T  37371263 tcaa 37371260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 21 - 182
Target Start/End: Original strand, 55343870 - 55344015
Alignment:
Q  21 tgttatctttaaatttaaacaaaattttgttacctatgataatagttccatgaagagttaaaattctataaataacatgagtagtacttgttaaaaattt 120  Q
    ||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| ||||              |||||||||||||||||||||||||    
T  55343870 tgttatctttaaatttaaacaaattttttttacctatgataatagttccatgaagaattaa--------------catgagtagtacttgttaaaaattt 55343955  T
Q  121 caagagatatccataatatttagaaaattggaaattgtgtttcttatgagagaaagataaag 182  Q
    ||||||||||||| |||||||||||||||| ||||  ||||| |||| ||||||||||||||    
T  55343956 caagagatatccacaatatttagaaaattgaaaat--tgtttgttataagagaaagataaag 55344015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 20 - 112
Target Start/End: Original strand, 30913653 - 30913745
Alignment:
Q  20 ttgttatctttaaatttaaacaaaattttgttacctatgataatagttccatgaagagttaaaattctataaataacatgagtagtacttgtt 112  Q
    |||||||||| ||||||||||||| ||||||||||||| ||||||||| |||||| |||||||||||||||||||| |||| ||||| |||||    
T  30913653 ttgttatcttaaaatttaaacaaatttttgttacctataataatagtttcatgaatagttaaaattctataaataagatgattagtaattgtt 30913745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 158 - 274
Target Start/End: Complemental strand, 37371251 - 37371135
Alignment:
Q  158 tgtttcttatgagagaaagataaagtgcgcnnnnnnntcgaaatttcttggagaaagatagtagtaactaacaattctttgttacatattaaatttattg 257  Q
    ||||| |||| |||||||||||||||||||       | ||||||| ||||| ||||| ||||||||||||||||| ||||||  |||||||||||||||    
T  37371251 tgtttgttataagagaaagataaagtgcgcaaaaaaatagaaatttgttggaaaaagagagtagtaactaacaattgtttgttgtatattaaatttattg 37371152  T
Q  258 gaaagataaagtgtgtg 274  Q
     ||||||||||||||||    
T  37371151 aaaagataaagtgtgtg 37371135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 23 - 124
Target Start/End: Complemental strand, 53370352 - 53370251
Alignment:
Q  23 ttatctttaaatttaaacaaaattttgttacctatgataatagttccatgaagagttaaaattctataaataacatgagtagtacttgttaaaaatttca 122  Q
    ||||||| |||||||||||||| |||||||||||| ||||| ||| | |||| |||||||||||||||||||| || ||||||  | |||||||||||||    
T  53370352 ttatcttaaaatttaaacaaaagtttgttacctataataatggttacttgaatagttaaaattctataaataagataagtagtcatcgttaaaaatttca 53370253  T
Q  123 ag 124  Q
    ||    
T  53370252 ag 53370251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 20 - 118
Target Start/End: Original strand, 30912726 - 30912823
Alignment:
Q  20 ttgttatctttaaatttaaacaaaattttgttacctatgataatagttccatgaagagttaaaattctataaataacatgagtagtacttgttaaaaat 118  Q
    |||||||||| |||||||||||||  |||||||||||  ||||| ||| |||||| |||||||||||||| ||||| |||| || || |||||||||||    
T  30912726 ttgttatcttaaaatttaaacaaatatttgttacctacaataatggtttcatgaatagttaaaattctatcaataagatgattatta-ttgttaaaaat 30912823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 24 - 123
Target Start/End: Original strand, 25493944 - 25494040
Alignment:
Q  24 tatctttaaatttaaacaaaattttgttacctatgataatagttccatgaagagttaaaattctataaataacatgagtagtacttgttaaaaatttcaa 123  Q
    |||||| |||||||||||||||||||||||  |    ||| |||||| |||||||||||||| ||||||||| |||||||  | ||||||||||||||||    
T  25493944 tatcttcaaatttaaacaaaattttgttacaaac---aatggttccaagaagagttaaaattatataaataagatgagtaacaattgttaaaaatttcaa 25494040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 20 - 124
Target Start/End: Original strand, 49263097 - 49263200
Alignment:
Q  20 ttgttatctttaaatttaaacaaaattttgttacctatgataatagttccatgaagagttaaaattctataaataacatgagtagtacttgttaaaaatt 119  Q
    |||| ||||| ||||||||||||||||||||||   |  ||| ||||| || ||||  |||||||||||||||||| |||||||| | ||||||||||||    
T  49263097 ttgtcatcttcaaatttaaacaaaattttgttataaacaata-tagttacaagaagtattaaaattctataaataagatgagtagcaattgttaaaaatt 49263195  T
Q  120 tcaag 124  Q
    |||||    
T  49263196 tcaag 49263200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 347 - 402
Target Start/End: Complemental strand, 37371058 - 37371003
Alignment:
Q  347 ctatttttatgttaaaattctaaaacgatgcttaaaaaggaacggagggagtatta 402  Q
    |||||||| |||||||||||||||||||  |||||||||||||||| |||||||||    
T  37371058 ctatttttgtgttaaaattctaaaacgacacttaaaaaggaacggatggagtatta 37371003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 20 - 124
Target Start/End: Original strand, 45666433 - 45666533
Alignment:
Q  20 ttgttatctttaaatttaaacaaaattttgttacctatgataatagttccatgaagagttaaaattctataaataacatgagtagtacttgttaaaaatt 119  Q
    ||||||| || |||||||||||||||||||||  |||  |  || |||||| |||||||||||||||||||||||| |||||||  | ||||||||| ||    
T  45666433 ttgttattttgaaatttaaacaaaattttgtt--cta--aacatggttccaagaagagttaaaattctataaataagatgagtaacaattgttaaaattt 45666528  T
Q  120 tcaag 124  Q
    |||||    
T  45666529 tcaag 45666533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 22 - 126
Target Start/End: Original strand, 53393456 - 53393557
Alignment:
Q  22 gttatctttaaatttaaacaaaattttgttacctatgataatagttccatgaagagttaaaattctataaataacatgagtagtacttgttaaaaatttc 121  Q
    ||||||||||||||||||||||||||||||||     | ||| |||| | |||||||||||||| ||||||| | || ||||  | ||||||||||||||    
T  53393456 gttatctttaaatttaaacaaaattttgttac---aaacaatggttctaagaagagttaaaattttataaatgagataagtaacaattgttaaaaatttc 53393552  T
Q  122 aagag 126  Q
    |||||    
T  53393553 aagag 53393557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 20 - 124
Target Start/End: Complemental strand, 1821551 - 1821450
Alignment:
Q  20 ttgttatctttaaatttaaacaaaattttgttacctatgataatagttccatgaagagttaaaattctataaataacatgagtagtacttgttaaaaatt 119  Q
    |||||||||| ||||||||||||||||||||| || || |  ||  || || ||| |||||||||||||||||||| |||||||  | ||||||||||||    
T  1821551 ttgttatcttcaaatttaaacaaaattttgtt-ccaatca--atgatttcaagaaaagttaaaattctataaataaaatgagtaacaattgttaaaaatt 1821455  T
Q  120 tcaag 124  Q
    |||||    
T  1821454 tcaag 1821450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 340 - 389
Target Start/End: Complemental strand, 24537949 - 24537900
Alignment:
Q  340 cactttgctatttttatgttaaaattctaaaacgatgcttaaaaaggaac 389  Q
    ||||| |||||||||||||||||||||||||||||  |||||||||||||    
T  24537949 cacttcgctatttttatgttaaaattctaaaacgacacttaaaaaggaac 24537900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 20 - 124
Target Start/End: Complemental strand, 34031982 - 34031882
Alignment:
Q  20 ttgttatctttaaatttaaacaaaattttgttacctatgataatagttccatgaagagttaaaattctataaataacatgagtagtacttgttaaaaatt 119  Q
    ||||||| ||||||||||||||||||||| || || |  | ||| |||||| |||||||||||||||||||||| | |||||| ||| ||| ||||||||    
T  34031982 ttgttatttttaaatttaaacaaaattttctt-ccaa--aaaatggttccaagaagagttaaaattctataaatgaaatgagt-gtaattgataaaaatt 34031887  T
Q  120 tcaag 124  Q
    |||||    
T  34031886 tcaag 34031882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 20 - 124
Target Start/End: Original strand, 46195874 - 46195975
Alignment:
Q  20 ttgttatctttaaatttaaacaaaattttgttacctatgataatagttccatgaagagttaaaattctataaataacatgagtagtacttgttaaaaatt 119  Q
    |||||||||| ||||||||||||||||||||| || |  | ||| ||| || |||||||||||||||||||||| | ||||||   | ||||||||||||    
T  46195874 ttgttatcttcaaatttaaacaaaattttgtt-ccaa--acaatggtttcaagaagagttaaaattctataaattatatgagtgacaattgttaaaaatt 46195970  T
Q  120 tcaag 124  Q
    |||||    
T  46195971 tcaag 46195975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 20 - 123
Target Start/End: Complemental strand, 54982734 - 54982634
Alignment:
Q  20 ttgttatctttaaatttaaacaaaattttgttacctatgataatagttccatgaagagttaaaattctataaataacatgagtagtacttgttaaaaatt 119  Q
    |||||||||| ||||||| ||||||||||| |||  |    ||| ||| || |||||||||||||||||||||||| |||||||  | ||||||||||||    
T  54982734 ttgttatcttcaaatttatacaaaattttgctacaaac---aatggtttcaagaagagttaaaattctataaataagatgagtaacaattgttaaaaatt 54982638  T
Q  120 tcaa 123  Q
    ||||    
T  54982637 tcaa 54982634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 19 - 124
Target Start/End: Original strand, 2492949 - 2493052
Alignment:
Q  19 tttgttatctttaaatttaaacaaaattttgttacctatgataatagttccatgaagagtt-aaaattctataaataacatgagtagtacttgttaaaaa 117  Q
    ||||||||||| |||||||||||||||||||||||     | ||| |||  | |||||||| ||||||||||||| || |||||||| | ||||||||||    
T  2492949 tttgttatcttcaaatttaaacaaaattttgttac---aaacaatggttataagaagagttaaaaattctataaaaaagatgagtagcaattgttaaaaa 2493045  T
Q  118 tttcaag 124  Q
    |||||||    
T  2493046 tttcaag 2493052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 197 - 264
Target Start/End: Complemental strand, 45635106 - 45635041
Alignment:
Q  197 gaaatttcttggagaaagatagtagtaactaacaattctttgttacatattaaatttattggaaagat 264  Q
    ||||||| ||||| ||||| ||||||||||||||||| |||||  ||||||||||||||| |||||||    
T  45635106 gaaatttgttggaaaaagagagtagtaactaacaattgtttgt--catattaaatttatttgaaagat 45635041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 19 - 103
Target Start/End: Complemental strand, 47354007 - 47353923
Alignment:
Q  19 tttgttatctttaaatttaaacaaaattttgttacctatgataatagttccatgaagagttaaaattctataaataacatgagta 103  Q
    ||||||||||  ||||||||||||| |||||||| |||| ||||| |||  || || |||| ||||||||||||||| |||||||    
T  47354007 tttgttatctgcaaatttaaacaaatttttgttaactattataatggtttgattaatagttgaaattctataaataagatgagta 47353923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 19 - 124
Target Start/End: Complemental strand, 24074118 - 24074016
Alignment:
Q  19 tttgttatctttaaatttaaacaaaattttgttacctatgataatagttccatgaagagttaaaattctataaataacatgagtagtacttgttaaaaat 118  Q
    ||||| ||||| |||||||||||||||||||||||  |    ||| ||| || ||||||||||||||||| |||||| |||||||  | |||||||||||    
T  24074118 tttgtcatcttcaaatttaaacaaaattttgttacaaac---aatggtttcaagaagagttaaaattctagaaataagatgagtaacaattgttaaaaat 24074022  T
Q  119 ttcaag 124  Q
     |||||    
T  24074021 ctcaag 24074016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 241 - 274
Target Start/End: Complemental strand, 1821214 - 1821181
Alignment:
Q  241 acatattaaatttattggaaagataaagtgtgtg 274  Q
    ||||||||||||||||||||||||||||||||||    
T  1821214 acatattaaatttattggaaagataaagtgtgtg 1821181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 20 - 120
Target Start/End: Complemental strand, 19443529 - 19443432
Alignment:
Q  20 ttgttatctttaaatttaaacaaaattttgttacctatgataatagttccatgaagagttaaaattctataaataacatgagtagtacttgttaaaaatt 119  Q
    |||||||||| |||||||||||||||||| || || |  | ||  ||| || |||||||||||||||||||||||| |||||||  | ||||||||||||    
T  19443529 ttgttatcttcaaatttaaacaaaattttatt-ccaa--acaaaggtttcaagaagagttaaaattctataaataagatgagtaacaattgttaaaaatt 19443433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 217 - 274
Target Start/End: Original strand, 55344035 - 55344092
Alignment:
Q  217 agtagtaactaacaattctttgttacatattaaatttattggaaagataaagtgtgtg 274  Q
    ||||||| ||||||||| | | |||||||||||||||||| || ||||||||||||||    
T  55344035 agtagtacctaacaattgtctattacatattaaatttattagacagataaagtgtgtg 55344092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 65 - 124
Target Start/End: Original strand, 6949277 - 6949336
Alignment:
Q  65 gttccatgaagagttaaaattctataaataacatgagtagtacttgttaaaaatttcaag 124  Q
    |||||| ||||| |||||||||||||||||| | |||||  | |||||||||||||||||    
T  6949277 gttccaagaagatttaaaattctataaataagaagagtaacaattgttaaaaatttcaag 6949336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 241 - 272
Target Start/End: Original strand, 6949506 - 6949537
Alignment:
Q  241 acatattaaatttattggaaagataaagtgtg 272  Q
    ||||||||||||||||||||||||||||||||    
T  6949506 acatattaaatttattggaaagataaagtgtg 6949537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 352 - 399
Target Start/End: Complemental strand, 8077835 - 8077788
Alignment:
Q  352 tttatgttaaaattctaaaacgatgcttaaaaaggaacggagggagta 399  Q
    |||||||||||||||||||||||  |||||||||||| ||| ||||||    
T  8077835 tttatgttaaaattctaaaacgacacttaaaaaggaatggatggagta 8077788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 243 - 274
Target Start/End: Original strand, 17330896 - 17330927
Alignment:
Q  243 atattaaatttattggaaagataaagtgtgtg 274  Q
    ||||||||||||||||||||||||||||||||    
T  17330896 atattaaatttattggaaagataaagtgtgtg 17330927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 341 - 399
Target Start/End: Complemental strand, 38433885 - 38433827
Alignment:
Q  341 actttgctatttttatgttaaaattctaaaacgatgcttaaaaaggaacggagggagta 399  Q
    |||| ||||||||| |||||||||| ||||||||  |||||||||||||| | ||||||    
T  38433885 acttcgctatttttgtgttaaaattttaaaacgacacttaaaaaggaacgaatggagta 38433827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 241 - 274
Target Start/End: Original strand, 9808095 - 9808128
Alignment:
Q  241 acatattaaatttattggaaagataaagtgtgtg 274  Q
    |||||||||||||||| |||||||||||||||||    
T  9808095 acatattaaatttattagaaagataaagtgtgtg 9808128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 241 - 274
Target Start/End: Complemental strand, 24073478 - 24073445
Alignment:
Q  241 acatattaaatttattggaaagataaagtgtgtg 274  Q
    ||||||||||||||||| ||||||||||||||||    
T  24073478 acatattaaatttattgaaaagataaagtgtgtg 24073445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 241 - 274
Target Start/End: Complemental strand, 37209689 - 37209656
Alignment:
Q  241 acatattaaatttattggaaagataaagtgtgtg 274  Q
    ||||||||||||||||| ||||||||||||||||    
T  37209689 acatattaaatttattgaaaagataaagtgtgtg 37209656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 241 - 274
Target Start/End: Original strand, 41503037 - 41503070
Alignment:
Q  241 acatattaaatttattggaaagataaagtgtgtg 274  Q
    |||||||||||||||| |||||||||||||||||    
T  41503037 acatattaaatttattagaaagataaagtgtgtg 41503070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 245 - 274
Target Start/End: Complemental strand, 46430542 - 46430513
Alignment:
Q  245 attaaatttattggaaagataaagtgtgtg 274  Q
    ||||||||||||||||||||||||||||||    
T  46430542 attaaatttattggaaagataaagtgtgtg 46430513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 241 - 274
Target Start/End: Complemental strand, 47944100 - 47944067
Alignment:
Q  241 acatattaaatttattggaaagataaagtgtgtg 274  Q
    |||||||||||||||| |||||||||||||||||    
T  47944100 acatattaaatttattagaaagataaagtgtgtg 47944067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 241 - 274
Target Start/End: Original strand, 50721411 - 50721444
Alignment:
Q  241 acatattaaatttattggaaagataaagtgtgtg 274  Q
    |||||||||||||| |||||||||||||||||||    
T  50721411 acatattaaatttagtggaaagataaagtgtgtg 50721444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 241 - 273
Target Start/End: Complemental strand, 19443186 - 19443154
Alignment:
Q  241 acatattaaatttattggaaagataaagtgtgt 273  Q
    ||||||||||||||||||||||||||| |||||    
T  19443186 acatattaaatttattggaaagataaaatgtgt 19443154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 72 - 124
Target Start/End: Complemental strand, 38044823 - 38044771
Alignment:
Q  72 gaagagttaaaattctataaataacatgagtagtacttgttaaaaatttcaag 124  Q
    |||||||||||||| ||||||||| |||  ||| | |||||||||||||||||    
T  38044823 gaagagttaaaattatataaataagatggatagaaattgttaaaaatttcaag 38044771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 72 - 124
Target Start/End: Complemental strand, 47944390 - 47944338
Alignment:
Q  72 gaagagttaaaattctataaataacatgagtagtacttgttaaaaatttcaag 124  Q
    |||||||||||||| ||||||||| |||| ||  | |||||||||||||||||    
T  47944390 gaagagttaaaattatataaataagatgaataaaaattgttaaaaatttcaag 47944338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 155; Significance: 4e-82; HSPs: 23)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 20 - 274
Target Start/End: Complemental strand, 21527283 - 21527031
Alignment:
Q  20 ttgttatctttaaatttaaacaaaattttgttacctatgataatagttccatgaagagttaaaattctataaataacatgagtagtacttgttaaaaatt 119  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  21527283 ttgttatcttcaaatttaaacaaaattttgttacctatgataatagttccatgaagagttaaaattctatgaataacatgagtagtacttgttaaaaatt 21527184  T
Q  120 tcaagagatatccataatatttagaaaattggaaattgtgtttcttatgagagaaagataaagtgcgcnnnnnnntcgaaatttcttggagaaagatagt 219  Q
    |||||| |||| ||||||||||| ||||||| ||||  ||||| ||||||||||||||||||| ||||       |   ||||| ||||||||| | |||    
T  21527183 tcaagacatatgcataatatttaaaaaattgaaaat--tgtttgttatgagagaaagataaagcgcgcaagaaaatatgaatttgttggagaaaaagagt 21527086  T
Q  220 agtaactaacaattctttgttacatattaaatttattggaaagataaagtgtgtg 274  Q
    |||||| ||||||| ||||||||||||||||||||||| ||||||||||||||||    
T  21527085 agtaaccaacaattgtttgttacatattaaatttattgaaaagataaagtgtgtg 21527031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 20 - 274
Target Start/End: Complemental strand, 7972617 - 7972369
Alignment:
Q  20 ttgttatctttaaatttaaacaaaattttgttacctatgataatagttccatgaagagttaaaattctataaataacatgagtagtacttgttaaaaatt 119  Q
    |||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  7972617 ttgttatcttcaaatttaaacaaaattttgttacctgtgataatagttccatgaagagttaaaattctatgaataacatgagtagtacttgttaaaaatt 7972518  T
Q  120 tcaagagatatccataatatttagaaaattggaaattgtgtttcttatgagagaaagataaagtgcgcnnnnnnntcgaaatttcttggagaaagatagt 219  Q
    | |||||||||  |||||||||||||||||| ||||  ||||| |||||||    |||||||||||||       | | ||||| ||||||||||| |||    
T  7972517 ttaagagatatgtataatatttagaaaattgaaaat--tgtttgttatgag----agataaagtgcgcaaaaaaataggaatttgttggagaaagagagt 7972424  T
Q  220 agtaactaacaattctttgttacatattaaatttattggaaagataaagtgtgtg 274  Q
    |||||| ||||||  ||||||||||||||||||||||||||||||||| ||||||    
T  7972423 agtaaccaacaatggtttgttacatattaaatttattggaaagataaaatgtgtg 7972369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 20 - 120
Target Start/End: Complemental strand, 6111084 - 6110984
Alignment:
Q  20 ttgttatctttaaatttaaacaaaattttgttacctatgataatagttccatgaagagttaaaattctataaataacatgagtagtacttgttaaaaatt 119  Q
    |||||||||| ||| ||||| ||||||||||||||||| ||||| |||| |||||||||||||||| ||||||||| |||||||||| ||||||||||||    
T  6111084 ttgttatcttcaaacttaaataaaattttgttacctataataattgttcaatgaagagttaaaattttataaataagatgagtagtaattgttaaaaatt 6110985  T
Q  120 t 120  Q
    |    
T  6110984 t 6110984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 20 - 123
Target Start/End: Original strand, 23410588 - 23410691
Alignment:
Q  20 ttgttatctttaaatttaaacaaaattttgttacctatgataatagttccatgaagagttaaaattctataaataacatgagtagtacttgttaaaaatt 119  Q
    |||||||||| ||||||||||||||||||||||||||||||||  |||| ||||| ||||| |||| ||||||||| || ||||||| ||||||||||||    
T  23410588 ttgttatcttaaaatttaaacaaaattttgttacctatgataacggttctatgaatagttacaattttataaataagataagtagtaattgttaaaaatt 23410687  T
Q  120 tcaa 123  Q
    ||||    
T  23410688 tcaa 23410691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 20 - 90
Target Start/End: Complemental strand, 9095727 - 9095657
Alignment:
Q  20 ttgttatctttaaatttaaacaaaattttgttacctatgataatagttccatgaagagttaaaattctata 90  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||    
T  9095727 ttgttatcttcaaatttaaacaaaattttgttacctatgataatagtttcatgaagagttaaaattttata 9095657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 20 - 124
Target Start/End: Original strand, 8460964 - 8461070
Alignment:
Q  20 ttgttatctttaaatttaaacaaaattttgttacctatgataatagttccatgaagagttaaaattctataaataacatgagtag--tacttgttaaaaa 117  Q
    |||||||||| |||||||||||||| |||||||||||| | ||| |||||||||| |||||||||||||||||||| || |||||  || ||||||||||    
T  8460964 ttgttatcttaaaatttaaacaaaactttgttacctataacaatggttccatgaatagttaaaattctataaataagataagtagtataattgttaaaaa 8461063  T
Q  118 tttcaag 124  Q
     ||||||    
T  8461064 cttcaag 8461070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 20 - 89
Target Start/End: Original strand, 4184786 - 4184855
Alignment:
Q  20 ttgttatctttaaatttaaacaaaattttgttacctatgataatagttcc--atgaagagttaaaattctat 89  Q
    |||||||||||||||||||||||||||||||||  ||||||||| |||||  ||||||||||||||||||||    
T  4184786 ttgttatctttaaatttaaacaaaattttgtta--tatgataatggttccatatgaagagttaaaattctat 4184855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 20 - 89
Target Start/End: Original strand, 4665990 - 4666065
Alignment:
Q  20 ttgttatctttaaatttaaacaaaattttgttacc----tatgataatagttcc--atgaagagttaaaattctat 89  Q
    |||||||||||||||||||||||||||||||||||    ||||||||| |||||  ||||||||||||||||||||    
T  4665990 ttgttatctttaaatttaaacaaaattttgttacctatatatgataatggttccatatgaagagttaaaattctat 4666065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 45 - 124
Target Start/End: Original strand, 34889194 - 34889273
Alignment:
Q  45 ttttgttacctatgataatagttccatgaagagttaaaattctataaataacatgagtagtacttgttaaaaatttcaag 124  Q
    |||| |||||||| ||||| |||  ||||| |||||||||||||||||||| ||||||| || |||||||||||||||||    
T  34889194 ttttattacctataataatggttttatgaatagttaaaattctataaataagatgagtaataattgttaaaaatttcaag 34889273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 20 - 116
Target Start/End: Original strand, 25056607 - 25056700
Alignment:
Q  20 ttgttatctttaaatttaaacaaaattttgttacctatgataatagttccatgaagagttaaaattctataaataacatgagtagtacttgttaaaa 116  Q
    |||||||||| |||||||||||||||||||||||  |  || ||   |||| |||||||||||||||||||||||| |||||||  | |||||||||    
T  25056607 ttgttatcttcaaatttaaacaaaattttgttacaaacaatgat---tccaagaagagttaaaattctataaataagatgagtaacaattgttaaaa 25056700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 340 - 393
Target Start/End: Original strand, 6026615 - 6026668
Alignment:
Q  340 cactttgctatttttatgttaaaattctaaaacgatgcttaaaaaggaacggag 393  Q
    ||||||||||||||| |||||| ||||||||||||  |||||||||||||||||    
T  6026615 cactttgctatttttgtgttaatattctaaaacgacacttaaaaaggaacggag 6026668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 340 - 401
Target Start/End: Complemental strand, 21526964 - 21526903
Alignment:
Q  340 cactttgctatttttatgttaaaattctaaaacgatgcttaaaaaggaacggagggagtatt 401  Q
    ||||| |||||||||   |||||||||||||||||  |||||||||||||||||||||||||    
T  21526964 cacttcgctatttttgatttaaaattctaaaacgacacttaaaaaggaacggagggagtatt 21526903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 348 - 402
Target Start/End: Complemental strand, 7972294 - 7972240
Alignment:
Q  348 tatttttatgttaaaattctaaaacgatgcttaaaaaggaacggagggagtatta 402  Q
    ||||||| ||||||||||||||||||   ||||||||| ||||||||||||||||    
T  7972294 tatttttgtgttaaaattctaaaacgtcacttaaaaagaaacggagggagtatta 7972240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 241 - 274
Target Start/End: Complemental strand, 2437369 - 2437336
Alignment:
Q  241 acatattaaatttattggaaagataaagtgtgtg 274  Q
    ||||||||||||||||||||||||||||||||||    
T  2437369 acatattaaatttattggaaagataaagtgtgtg 2437336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 76 - 124
Target Start/End: Original strand, 8049337 - 8049385
Alignment:
Q  76 agttaaaattctataaataacatgagtagtacttgttaaaaatttcaag 124  Q
    ||||||||||||||||| || |||||||| | |||||||||||||||||    
T  8049337 agttaaaattctataaaaaagatgagtagcaattgttaaaaatttcaag 8049385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 73 - 124
Target Start/End: Complemental strand, 14093697 - 14093646
Alignment:
Q  73 aagagttaaaattctataaataacatgagtagtacttgttaaaaatttcaag 124  Q
    ||||||||||||||||||||||| |||||||  | || ||||||||||||||    
T  14093697 aagagttaaaattctataaataagatgagtaacaatttttaaaaatttcaag 14093646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 122 - 187
Target Start/End: Original strand, 4184999 - 4185062
Alignment:
Q  122 aagagatatccataatatttagaaaattggaaattgtgtttcttatgagagaaagataaagtgcgc 187  Q
    |||| |||| ||||||||||| ||||||| |||||||  || ||||||||||||||||||| ||||    
T  4184999 aagaaatatgcataatatttaaaaaattgaaaattgt--ttgttatgagagaaagataaagcgcgc 4185062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 122 - 187
Target Start/End: Original strand, 4666209 - 4666272
Alignment:
Q  122 aagagatatccataatatttagaaaattggaaattgtgtttcttatgagagaaagataaagtgcgc 187  Q
    ||||||||| || |||||||| ||||||| |||||||  || ||||||||||||||||||| ||||    
T  4666209 aagagatatgcacaatatttaaaaaattgaaaattgt--ttgttatgagagaaagataaagcgcgc 4666272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 23 - 85
Target Start/End: Complemental strand, 26252550 - 26252488
Alignment:
Q  23 ttatctttaaatttaaacaaaattttgttacctatgataatagttccatgaagagttaaaatt 85  Q
    ||||||| | ||||||||||||||||||||| ||| |||||  ||  ||||||||||||||||    
T  26252550 ttatcttcatatttaaacaaaattttgttacatataataatgattttatgaagagttaaaatt 26252488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 241 - 274
Target Start/End: Original strand, 8049834 - 8049867
Alignment:
Q  241 acatattaaatttattggaaagataaagtgtgtg 274  Q
    ||||||||||||||||||||| ||||||||||||    
T  8049834 acatattaaatttattggaaatataaagtgtgtg 8049867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 241 - 274
Target Start/End: Complemental strand, 14093354 - 14093321
Alignment:
Q  241 acatattaaatttattggaaagataaagtgtgtg 274  Q
    |||||||||||||||||||| |||||||||||||    
T  14093354 acatattaaatttattggaaggataaagtgtgtg 14093321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 245 - 274
Target Start/End: Original strand, 25057045 - 25057074
Alignment:
Q  245 attaaatttattggaaagataaagtgtgtg 274  Q
    ||||||||||||||||||||||||||||||    
T  25057045 attaaatttattggaaagataaagtgtgtg 25057074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 241 - 274
Target Start/End: Complemental strand, 26252152 - 26252119
Alignment:
Q  241 acatattaaatttattggaaagataaagtgtgtg 274  Q
    |||||||||||||||| |||||||||||||||||    
T  26252152 acatattaaatttattagaaagataaagtgtgtg 26252119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 151; Significance: 1e-79; HSPs: 40)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 20 - 274
Target Start/End: Complemental strand, 4962913 - 4962661
Alignment:
Q  20 ttgttatctttaaatttaaacaaaattttgttacctatgataatagttccatgaagagttaaaattctataaataacatgagtagtacttgttaaaaatt 119  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | ||    
T  4962913 ttgttatcttcaaatttaaacaaaattttgttacctatgataatagtttcatgaagagttaaaattctataaataacatgagtagtacttgttaatactt 4962814  T
Q  120 tcaagagatatccataatatttagaaaattggaaattgtgtttcttatgagagaaagataaagtgcgcnnnnnnntcgaaatttcttggagaaagatagt 219  Q
    ||||||||||| || ||| |||||||||||| ||||  ||||| ||||||||||||||||||   | |       |  |||||| ||||||||||| |||    
T  4962813 tcaagagatatgcacaatttttagaaaattgaaaat--tgtttgttatgagagaaagataaaacacacaaaaaaataaaaatttgttggagaaagagagt 4962716  T
Q  220 agtaactaacaattctttgttacatattaaatttattggaaagataaagtgtgtg 274  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  4962715 agtaactaacaattgtttgttacatattaaatttattggaaagataaagtgtgtg 4962661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 20 - 274
Target Start/End: Complemental strand, 14771393 - 14771141
Alignment:
Q  20 ttgttatctttaaatttaaacaaaattttgttacctatgataatagttccatgaagagttaaaattctataaataacatgagtagtacttgttaaaaatt 119  Q
    |||||||||| ||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||    
T  14771393 ttgttatcttcaaatttaaacaaaattttgttaaatatgataatagttccatgaagagttaaaattctataaataacatgagtaatacatgttaaaaatt 14771294  T
Q  120 tcaagagatatccataatatttagaaaattggaaattgtgtttcttatgagagaaagataaagtgcgcnnnnnnntcgaaatttcttggagaaagatagt 219  Q
    ||||||||||| ||||||||||||||||||| ||||  ||||| || |||||||||||||||| |||        | |||| || ||||||||||| |||    
T  14771293 tcaagagatatgcataatatttagaaaattgaaaat--tgtttgttttgagagaaagataaagcgcgtaaaaaaatagaaaattgttggagaaagagagt 14771196  T
Q  220 agtaactaacaattctttgttacatattaaatttattggaaagataaagtgtgtg 274  Q
    ||||||||| |||| ||||||||||||| ||||||||| ||||||||||||||||    
T  14771195 agtaactaagaattttttgttacatatttaatttattgaaaagataaagtgtgtg 14771141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 20 - 274
Target Start/End: Complemental strand, 15221845 - 15221593
Alignment:
Q  20 ttgttatctttaaatttaaacaaaattttgttacctatgataatagttccatgaagagttaaaattctataaataacatgagtagtacttgttaaaaatt 119  Q
    |||||||||| ||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||    
T  15221845 ttgttatcttcaaatttaaacaaaattttgttaaatatgataatagttccatgaagagttaaaattctataaataacatgagtaatacatgttaaaaatt 15221746  T
Q  120 tcaagagatatccataatatttagaaaattggaaattgtgtttcttatgagagaaagataaagtgcgcnnnnnnntcgaaatttcttggagaaagatagt 219  Q
    ||||||||||| ||||||||||||||||||| ||||  ||||| || |||||||||||||||| |||        | |||| || ||||||||||| |||    
T  15221745 tcaagagatatgcataatatttagaaaattgaaaat--tgtttgttttgagagaaagataaagcgcgtaaaaaaatagaaaattgttggagaaagagagt 15221648  T
Q  220 agtaactaacaattctttgttacatattaaatttattggaaagataaagtgtgtg 274  Q
    ||||||||| |||| ||||||||||||| ||||||||| ||||||||||||||||    
T  15221647 agtaactaagaattttttgttacatatttaatttattgaaaagataaagtgtgtg 15221593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 21 - 274
Target Start/End: Original strand, 25290731 - 25290982
Alignment:
Q  21 tgttatctttaaatttaaacaaaattttgttacctatgataatagttccatgaagagttaaaattctataaataacatgagtagtacttgttaaaaattt 120  Q
    ||||||| | ||||||||||||||||||||||||| |||||||||||||||||||||||||| || |||||||||||||||||||||||| |||||||||    
T  25290731 tgttatcatcaaatttaaacaaaattttgttacctgtgataatagttccatgaagagttaaattt-tataaataacatgagtagtacttgctaaaaattt 25290829  T
Q  121 caagagatatccataatatttagaaaattggaaattgtgtttcttatgagagaaagataaagtgcgc-nnnnnnntcgaaatttcttggagaaagatagt 219  Q
    |||||||||| ||||||| ||||| ||||| ||||  ||||| ||||||||||||||||||| ||||        | | ||||| |||||||| || |||    
T  25290830 caagagatatgcataatacttagagaattgaaaat--tgtttgttatgagagaaagataaagcgcgcaaaaaaaataggaatttgttggagaaggaaagt 25290927  T
Q  220 agtaactaacaattctttgttacatattaaatttattggaaagataaagtgtgtg 274  Q
    |||||||||||||| ||||||||||||||||||||||||||  ||||| ||||||    
T  25290928 agtaactaacaattgtttgttacatattaaatttattggaatcataaaatgtgtg 25290982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 32 - 130
Target Start/End: Original strand, 39432735 - 39432833
Alignment:
Q  32 aatttaaacaaaattttgttacctatgataatagttccatgaagagttaaaattctataaataacatgagtagtacttgttaaaaatttcaagagatat 130  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39432735 aatttaaacaaaattttgtcacctatgataatagttccatgaagagttaaaattctataaataacatgagtagtacttgttaaaaatttcaagagatat 39432833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 20 - 274
Target Start/End: Complemental strand, 46671994 - 46671746
Alignment:
Q  20 ttgttatctttaaatttaaacaaaattttgttacctatgataatagttccatgaagagttaaaattctataaataacatgagtagtacttgttaaaaatt 119  Q
    |||||||||| |||||||||||||  |||||||||| |||||||| || ||||||||||||||||| ||||||||||| ||||| |||||     |||||    
T  46671994 ttgttatcttcaaatttaaacaaatatttgttacctgtgataataatttcatgaagagttaaaattttataaataacacgagtaatactt-----aaatt 46671900  T
Q  120 tcaagagatatccataatatttagaaaattggaaattgtgtttcttatgagagaaagataaagtgcgcnnnnnnntcga-aatttcttggagaaagatag 218  Q
    ||||||||||| || |||||||| ||||||| ||||  ||||| |||||||| ||||||||||  |||          | | ||| ||| ||||||| ||    
T  46671899 tcaagagatatgcacaatatttaaaaaattgaaaat--tgtttgttatgagataaagataaagcacgcaaaaaaaaaaagattttgttgtagaaagagag 46671802  T
Q  219 tagtaactaacaattctttgttacatattaaatttattggaaagataaagtgtgtg 274  Q
    | ||||||||||||| ||||||||| ||||||||||||||||| ||||||||||||    
T  46671801 ttgtaactaacaattgtttgttacacattaaatttattggaaaaataaagtgtgtg 46671746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 20 - 124
Target Start/End: Original strand, 15643465 - 15643569
Alignment:
Q  20 ttgttatctttaaatttaaacaaaattttgttacctatgataatagttccatgaagagttaaaattctataaataacatgagtagtacttgttaaaaatt 119  Q
    |||||||||| |||||||||||||||||||||| |||| ||||| ||| ||||||||||||||||||||||||||| |||| |||||||| |||||||||    
T  15643465 ttgttatcttcaaatttaaacaaaattttgttagctatcataatggttacatgaagagttaaaattctataaataagatgaatagtactttttaaaaatt 15643564  T
Q  120 tcaag 124  Q
    |||||    
T  15643565 tcaag 15643569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 122 - 273
Target Start/End: Original strand, 4678740 - 4678889
Alignment:
Q  122 aagagatatccataatatttagaaaattggaaattgtgtttcttatgagagaaagataaagtgcgcnnnnnnntcgaaatttcttggagaaagatagtag 221  Q
    ||||||||| || |||| ||||||||||| |||||||  || ||| ||||||||||||||| ||||       | ||||||| ||||| ||||| |||||    
T  4678740 aagagatatgcacaatacttagaaaattgaaaattgt--ttgttacgagagaaagataaagcgcgcaaaaaaatagaaatttgttggataaagagagtag 4678837  T
Q  222 taactaacaattctttgttacatattaaatttattggaaagataaagtgtgt 273  Q
    ||||||| |||| |||||||||||||||||||||||||||||||||||||||    
T  4678838 taactaataattgtttgttacatattaaatttattggaaagataaagtgtgt 4678889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 139 - 274
Target Start/End: Original strand, 39434325 - 39434459
Alignment:
Q  139 tttagaaaattggaaattgtgtttcttatgagagaaagataaagtgcgcnnnnnnn-tcgaaatttcttggagaaagatagtagtaactaacaattcttt 237  Q
    ||||||||||||||||||||  || ||||||||||||||||||| || |        || |||||| ||||||||||| ||||| |||||| |||| |||    
T  39434325 tttagaaaattggaaattgt--ttgttatgagagaaagataaagcgcacaaaaaaaatcaaaatttgttggagaaagagagtagcaactaaaaattattt 39434422  T
Q  238 gttacatattaaatttattggaaagataaagtgtgtg 274  Q
    |||||||||||||||||||||||||||||||||||||    
T  39434423 gttacatattaaatttattggaaagataaagtgtgtg 39434459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 199 - 274
Target Start/End: Complemental strand, 24393882 - 24393807
Alignment:
Q  199 aatttcttggagaaagatagtagtaactaacaattctttgttacatattaaatttattggaaagataaagtgtgtg 274  Q
    ||||| ||||||||||| |||||||| ||| |||| ||||||||||||||||||||||||||||||||||||||||    
T  24393882 aatttgttggagaaagagagtagtaattaataattgtttgttacatattaaatttattggaaagataaagtgtgtg 24393807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 23 - 124
Target Start/End: Original strand, 4567421 - 4567519
Alignment:
Q  23 ttatctttaaatttaaacaaaattttgttacctatgataatagttccatgaagagttaaaattctataaataacatgagtagtacttgttaaaaatttca 122  Q
    ||||||| |||||||||||||||||||||||  |    ||| |||||| |||||||||||||||||||||||| |||||||| | |||||||||||||||    
T  4567421 ttatcttcaaatttaaacaaaattttgttacaaac---aatggttccaagaagagttaaaattctataaataagatgagtagcaattgttaaaaatttca 4567517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 32 - 92
Target Start/End: Complemental strand, 39430548 - 39430488
Alignment:
Q  32 aatttaaacaaaattttgttacctatgataatagttccatgaagagttaaaattctataaa 92  Q
    |||| |||||||||||||||| ||||||||||| |||||||||||||||||||||||||||    
T  39430548 aattgaaacaaaattttgttatctatgataatacttccatgaagagttaaaattctataaa 39430488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 19 - 102
Target Start/End: Complemental strand, 42509750 - 42509667
Alignment:
Q  19 tttgttatctttaaatttaaacaaaattttgttacctatgataatagttccatgaagagttaaaattctataaataacatgagt 102  Q
    ||||||||||  |||||||||||||||||||||| |||| ||||||| | ||||||||||| |||||||||| |||| ||||||    
T  42509750 tttgttatctgcaaatttaaacaaaattttgttatctataataatagctgcatgaagagtttaaattctatacataagatgagt 42509667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 22 - 91
Target Start/End: Complemental strand, 1719858 - 1719789
Alignment:
Q  22 gttatctttaaatttaaacaaaattttgttacctatgataatagttccatgaagagttaaaattctataa 91  Q
    |||||||  ||||||||||| ||||| ||||||||| ||||||||||||| || ||||||||||||||||    
T  1719858 gttatctgcaaatttaaacataatttcgttacctataataatagttccataaatagttaaaattctataa 1719789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 199 - 274
Target Start/End: Original strand, 15643589 - 15643664
Alignment:
Q  199 aatttcttggagaaagatagtagtaactaacaattctttgttacatattaaatttattggaaagataaagtgtgtg 274  Q
    ||||| ||||||||||| | | |||||||| |||| ||| ||| ||||||||||||||||||||||||| ||||||    
T  15643589 aatttgttggagaaagagattcgtaactaataattttttcttaaatattaaatttattggaaagataaaatgtgtg 15643664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 342 - 400
Target Start/End: Complemental strand, 46671676 - 46671617
Alignment:
Q  342 ctttgctatttttatgttaaaa-ttctaaaacgatgcttaaaaaggaacggagggagtat 400  Q
    ||||||||||||| |||||||| |||||||||||  ||||||||||||||||||||||||    
T  46671676 ctttgctatttttgtgttaaaaattctaaaacgacacttaaaaaggaacggagggagtat 46671617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 347 - 401
Target Start/End: Complemental strand, 4962588 - 4962534
Alignment:
Q  347 ctatttttatgttaaaattctaaaacgatgcttaaaaaggaacggagggagtatt 401  Q
    |||||||| ||||||||||||||||||   |||||||||||||||||||||||||    
T  4962588 ctatttttgtgttaaaattctaaaacggcacttaaaaaggaacggagggagtatt 4962534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 340 - 400
Target Start/End: Original strand, 25291048 - 25291109
Alignment:
Q  340 cactttgctatttttatgttaaaa-ttctaaaacgatgcttaaaaaggaacggagggagtat 400  Q
    ||||| ||||||||| |||||||| |||||||||||  ||||||||||||||||||||||||    
T  25291048 cacttcgctatttttgtgttaaaaattctaaaacgacacttaaaaaggaacggagggagtat 25291109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 119 - 233
Target Start/End: Complemental strand, 39430476 - 39430365
Alignment:
Q  119 ttcaagagatatccataatatttagaaaattggaaattgtgtttcttatgagagaaagataaagtgcgcnnnnnnntcgaaatttcttggagaaagatag 218  Q
    |||||||||||| || ||| |||||||||||| |||||||  || |||||||||||||||||||||| |       || |||||| ||||||||||  ||    
T  39430476 ttcaagagatatgcacaatttttagaaaattgtaaattgt--ttgttatgagagaaagataaagtgcac-aaaaaatcaaaatttgttggagaaagggag 39430380  T
Q  219 tagtaactaacaatt 233  Q
    |||||||||||||||    
T  39430379 tagtaactaacaatt 39430365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 340 - 399
Target Start/End: Complemental strand, 14771075 - 14771015
Alignment:
Q  340 cactttgctatttttatgttaaaattctaaaac-gatgcttaaaaaggaacggagggagta 399  Q
    |||||| |||||||| ||||||||||||||||| ||  |||||||||||||||||||||||    
T  14771075 cactttactatttttgtgttaaaattctaaaactgacacttaaaaaggaacggagggagta 14771015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 340 - 399
Target Start/End: Complemental strand, 15221527 - 15221467
Alignment:
Q  340 cactttgctatttttatgttaaaattctaaaac-gatgcttaaaaaggaacggagggagta 399  Q
    |||||| |||||||| ||||||||||||||||| ||  |||||||||||||||||||||||    
T  15221527 cactttactatttttgtgttaaaattctaaaactgacacttaaaaaggaacggagggagta 15221467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 34 - 124
Target Start/End: Original strand, 39427507 - 39427593
Alignment:
Q  34 tttaaacaaaattttgttacctatgataatagttccatgaagagttaaaattctataaataacatgagtagtacttgttaaaaatttcaag 124  Q
    |||||||||||||||||||| ||| |||||  ||  |||||||||||||||||||||||||| |||   | || |||||||||||||||||    
T  39427507 tttaaacaaaattttgttacatat-ataatgattttatgaagagttaaaattctataaataagatg---aataattgttaaaaatttcaag 39427593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 31 - 124
Target Start/End: Original strand, 27723430 - 27723520
Alignment:
Q  31 aaatttaaacaaaattttgttacctatgataatagttccatgaagagttaaaattctataaataacatgagtagtacttgttaaaaatttcaag 124  Q
    ||||||||||||||||||||| || |  | ||| ||| || |||||| ||||||||||||||||| |||||||  | |||||||||||||||||    
T  27723430 aaatttaaacaaaattttgtt-ccaa--acaatggtttcaagaagagctaaaattctataaataagatgagtaacaattgttaaaaatttcaag 27723520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 20 - 116
Target Start/End: Complemental strand, 35793091 - 35792998
Alignment:
Q  20 ttgttatctttaaatttaaacaaaattttgttacctatgataatagttccatgaagagttaaaattctataaataacatgagtagtacttgttaaaa 116  Q
    |||||||||| |||||||||||||||||||| ||  |    ||| |||| | ||| |||||||||||||||||||| |||||||| | |||||||||    
T  35793091 ttgttatcttcaaatttaaacaaaattttgtaacaaac---aatggttctaagaaaagttaaaattctataaataagatgagtagaaattgttaaaa 35792998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 340 - 401
Target Start/End: Original strand, 39434526 - 39434588
Alignment:
Q  340 cactttgctatttttatgttaaaa-ttctaaaacgatgcttaaaaaggaacggagggagtatt 401  Q
    ||||| ||||||||| | |||||| |||||||||||  |||||||||||||||||||||||||    
T  39434526 cacttcgctatttttgtattaaaaattctaaaacgacacttaaaaaggaacggagggagtatt 39434588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 241 - 274
Target Start/End: Complemental strand, 3835395 - 3835362
Alignment:
Q  241 acatattaaatttattggaaagataaagtgtgtg 274  Q
    ||||||||||||||||||||||||||||||||||    
T  3835395 acatattaaatttattggaaagataaagtgtgtg 3835362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 241 - 274
Target Start/End: Original strand, 4567860 - 4567893
Alignment:
Q  241 acatattaaatttattggaaagataaagtgtgtg 274  Q
    ||||||||||||||||||||||||||||||||||    
T  4567860 acatattaaatttattggaaagataaagtgtgtg 4567893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 241 - 274
Target Start/End: Original strand, 27723760 - 27723793
Alignment:
Q  241 acatattaaatttattggaaagataaagtgtgtg 274  Q
    ||||||||||||||||||||||||||||||||||    
T  27723760 acatattaaatttattggaaagataaagtgtgtg 27723793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 75 - 124
Target Start/End: Original strand, 37124331 - 37124380
Alignment:
Q  75 gagttaaaattctataaataacatgagtagtacttgttaaaaatttcaag 124  Q
    |||||||||||||||||| || |||||||| | |||||||||||||||||    
T  37124331 gagttaaaattctataaaaaagatgagtagcatttgttaaaaatttcaag 37124380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 241 - 274
Target Start/End: Original strand, 37124656 - 37124689
Alignment:
Q  241 acatattaaatttattggaaagataaagtgtgtg 274  Q
    ||||||||||||||||||||||||||||||||||    
T  37124656 acatattaaatttattggaaagataaagtgtgtg 37124689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 239 - 274
Target Start/End: Complemental strand, 39430076 - 39430041
Alignment:
Q  239 ttacatattaaatttattggaaagataaagtgtgtg 274  Q
    ||||||||||||||||||| ||||||||||||||||    
T  39430076 ttacatattaaatttattgaaaagataaagtgtgtg 39430041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 124
Target Start/End: Original strand, 39617623 - 39617725
Alignment:
Q  19 tttgttatctttaaatttaaacaaaattttgttacctatgataatagttccatgaagagttaaaattctataaataacatgagtagtacttgttaaaaat 118  Q
    ||||||||||| |||||||||||||||||||||   |   | ||| ||| ||  ||||||||||||||||||||| | ||||||||   ||| |||||||    
T  39617623 tttgttatcttcaaatttaaacaaaattttgtt---tcaaacaatggtttcaaaaagagttaaaattctataaattagatgagtagcgattgctaaaaat 39617719  T
Q  119 ttcaag 124  Q
    ||||||    
T  39617720 ttcaag 39617725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 241 - 272
Target Start/End: Original strand, 47541931 - 47541962
Alignment:
Q  241 acatattaaatttattggaaagataaagtgtg 272  Q
    ||||||||||||||||||||||||||||||||    
T  47541931 acatattaaatttattggaaagataaagtgtg 47541962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 351 - 401
Target Start/End: Complemental strand, 24393730 - 24393680
Alignment:
Q  351 ttttatgttaaaattctaaaacgatgcttaaaaaggaacggagggagtatt 401  Q
    |||| ||||||| |||||||||||  ||||||||| |||||||||||||||    
T  24393730 ttttgtgttaaatttctaaaacgacacttaaaaagaaacggagggagtatt 24393680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 53
Target Start/End: Complemental strand, 3835627 - 3835594
Alignment:
Q  20 ttgttatctttaaatttaaacaaaattttgttac 53  Q
    |||||||||| |||||||||||||||||||||||    
T  3835627 ttgttatcttcaaatttaaacaaaattttgttac 3835594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 53
Target Start/End: Complemental strand, 8614813 - 8614780
Alignment:
Q  20 ttgttatctttaaatttaaacaaaattttgttac 53  Q
    |||||||||| |||||||||||||||||||||||    
T  8614813 ttgttatcttcaaatttaaacaaaattttgttac 8614780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 79
Target Start/End: Original strand, 17269583 - 17269640
Alignment:
Q  22 gttatctttaaatttaaacaaaattttgttacctatgataatagttccatgaagagtt 79  Q
    |||||| | |||||| |||||||||||||||||||| ||||| ||| |||||| ||||    
T  17269583 gttatcataaaatttcaacaaaattttgttacctataataatggtttcatgaatagtt 17269640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 31 - 63
Target Start/End: Original strand, 4678504 - 4678536
Alignment:
Q  31 aaatttaaacaaaattttgttacctatgataat 63  Q
    ||||||||||||||||||||||| |||||||||    
T  4678504 aaatttaaacaaaattttgttacatatgataat 4678536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 241 - 269
Target Start/End: Original strand, 16197328 - 16197356
Alignment:
Q  241 acatattaaatttattggaaagataaagt 269  Q
    |||||||||||||||||||||||||||||    
T  16197328 acatattaaatttattggaaagataaagt 16197356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 65 - 124
Target Start/End: Original strand, 17269662 - 17269722
Alignment:
Q  65 gttccatgaagagttaaaattctataaataacatgagt-agtacttgttaaaaatttcaag 124  Q
    |||| ||||| |||||||||||||||||||| |||| | | || |||||||||||||||||    
T  17269662 gttctatgaatagttaaaattctataaataagatgaataattaattgttaaaaatttcaag 17269722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 151; Significance: 1e-79; HSPs: 43)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 20 - 274
Target Start/End: Complemental strand, 4959341 - 4959089
Alignment:
Q  20 ttgttatctttaaatttaaacaaaattttgttacctatgataatagttccatgaagagttaaaattctataaataacatgagtagtacttgttaaaaatt 119  Q
    |||||||||| ||||||||| ||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| |||||    
T  4959341 ttgttatcttcaaatttaaataaaattttgttacctatgataatagtttcataaagagttaaaattctataaataacatgagtagtacttgttataaatt 4959242  T
Q  120 tcaagagatatccataatatttagaaaattggaaattgtgtttcttatgagagaaagataaagtgcgcnnnnnnntcgaaatttcttggagaaagatagt 219  Q
    ||||||||||| || |||||||||||||||| ||||  ||||| ||||||||||||||||||  ||||       | | ||||| ||||||||||| |||    
T  4959241 tcaagagatatgcacaatatttagaaaattgaaaat--tgtttgttatgagagaaagataaaacgcgcaaaaaaataggaatttgttggagaaagagagt 4959144  T
Q  220 agtaactaacaattctttgttacatattaaatttattggaaagataaagtgtgtg 274  Q
    ||||||||| |||| |||||||||||||||||||| |||||||||||||||||||    
T  4959143 agtaactaataattatttgttacatattaaatttaatggaaagataaagtgtgtg 4959089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 19 - 274
Target Start/End: Complemental strand, 34424736 - 34424488
Alignment:
Q  19 tttgttatctttaaatttaaacaaaattttgttacctatgataatagttccatgaagagttaaaattctataaataacatgagtagtacttgttaaaaat 118  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||    
T  34424736 tttgttatcttcaaatttaaacaaaattttgttacctatgataatagttccat-------taaaattctataaataacatgagtagtacttgttaaaaat 34424644  T
Q  119 ttcaagagatatccataatatttagaaaattggaaattgtgtttcttatgagagaaagataaagtgcgc--nnnnnnntcgaaatttcttggagaaagat 216  Q
    |||||||||||| ||||||||||||||||||  ||||  ||||| |||||| ||||| |||||| || |           | ||||| | || |||| |     
T  34424643 ttcaagagatatgcataatatttagaaaattaaaaat--tgtttgttatgaaagaaaaataaagcgcacaaaaaaaaaaaggaatttgtcggggaaatag 34424546  T
Q  217 agtagtaactaacaattctttgttacatattaaatttattggaaagataaagtgtgtg 274  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  34424545 agtagtaactaacaattgtttgttacatattaaatttattggaaagataaagtgtgtg 34424488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 54 - 274
Target Start/End: Original strand, 12412756 - 12412973
Alignment:
Q  54 ctatgataatagttccatgaagagttaaaattctataaataacatgagtagtacttgttaaaaatttcaagagatatccataatatttagaaaattggaa 153  Q
    |||||||||| ||||||||||||||||||||||||||||||| |||| || |||||||| ||||||||||||||||| |  |||||||||||||||||||    
T  12412756 ctatgataattgttccatgaagagttaaaattctataaataaaatgattattacttgttgaaaatttcaagagatattcgcaatatttagaaaattggaa 12412855  T
Q  154 attgtgtttcttatgagagaaagataaagtgcgcnnnnnnntcgaaatttcttggagaaagatagtagtaactaacaattctttgttacatattaaattt 253  Q
    ||  ||||| ||||| ||||||||||||| || |       ||| ||||| ||||||||||| ||||||||||||||||| ||||| || ||||||||||    
T  12412856 at--tgtttgttatgggagaaagataaagcgcac-aaaaaatcggaatttgttggagaaagagagtagtaactaacaattgtttgtcacgtattaaattt 12412952  T
Q  254 attggaaagataaagtgtgtg 274  Q
    |||||||||||||||||||||    
T  12412953 attggaaagataaagtgtgtg 12412973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 54 - 274
Target Start/End: Original strand, 12424816 - 12425033
Alignment:
Q  54 ctatgataatagttccatgaagagttaaaattctataaataacatgagtagtacttgttaaaaatttcaagagatatccataatatttagaaaattggaa 153  Q
    |||||||||| ||||||||||||||||||||||||||||||| |||| || |||||||| ||||||||||||||||| |  |||||||||||||||||||    
T  12424816 ctatgataattgttccatgaagagttaaaattctataaataaaatgattattacttgttgaaaatttcaagagatattcgcaatatttagaaaattggaa 12424915  T
Q  154 attgtgtttcttatgagagaaagataaagtgcgcnnnnnnntcgaaatttcttggagaaagatagtagtaactaacaattctttgttacatattaaattt 253  Q
    ||  ||||| ||||| ||||||||||||| || |       ||| ||||| ||||||||||| ||||||||||||||||| ||||| || ||||||||||    
T  12424916 at--tgtttgttatgggagaaagataaagcgcac-aaaaaatcggaatttgttggagaaagagagtagtaactaacaattgtttgtcacgtattaaattt 12425012  T
Q  254 attggaaagataaagtgtgtg 274  Q
    |||||||||||||||||||||    
T  12425013 attggaaagataaagtgtgtg 12425033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 135 - 274
Target Start/End: Original strand, 27746858 - 27746995
Alignment:
Q  135 aatatttagaaaattggaaattgtgtttcttatgagagaaagataaagtgcgcnnnnnnntcgaaatttcttggagaaagatagtagtaactaacaattc 234  Q
    |||||||||||||||| |||||||  || ||| |||||||||||||||||||        | ||||||| ||||||||||| |||||||||||||||||     
T  27746858 aatatttagaaaattgaaaattgt--ttgttaggagagaaagataaagtgcgtaaaaaaatagaaatttattggagaaagagagtagtaactaacaattg 27746955  T
Q  235 tttgttacatattaaatttattggaaagataaagtgtgtg 274  Q
    ||||||| ||||||||||||||||||| ||||||||||||    
T  27746956 tttgttaaatattaaatttattggaaaaataaagtgtgtg 27746995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 122 - 275
Target Start/End: Complemental strand, 25965514 - 25965360
Alignment:
Q  122 aagagatatccataatatttagaaaattggaaattgtgtttcttatgagagaaagataaa---gtgcgcnnnnnnntcgaaatttcttggagaaagatag 218  Q
    ||||||||| || |||||||||||||||| ||||  ||||| ||||||||||||||||||     ||||       | | | ||| ||||||||||| ||    
T  25965514 aagagatatgcacaatatttagaaaattgaaaat--tgtttgttatgagagaaagataaaacgccgcgcaaaaaaataggattttattggagaaagagag 25965417  T
Q  219 tagtaactaacaattctttgttacatattaaatttattggaaagataaagtgtgtgt 275  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  25965416 tagtaactaacaattgtttgttacatattaaatttattggaaagataaagtgtgtgt 25965360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 20 - 124
Target Start/End: Original strand, 41541155 - 41541259
Alignment:
Q  20 ttgttatctttaaatttaaacaaaattttgttacctatgataatagttccatgaagagttaaaattctataaataacatgagtagtacttgttaaaaatt 119  Q
    |||||||||| |||||||||||||||||||||| |||| ||||| |||| ||||| ||||||| |||||||||||| ||| ||| || ||||||||||||    
T  41541155 ttgttatcttaaaatttaaacaaaattttgttatctataataatggttcgatgaatagttaaagttctataaataagatgcgtattaattgttaaaaatt 41541254  T
Q  120 tcaag 124  Q
    |||||    
T  41541255 tcaag 41541259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 20 - 117
Target Start/End: Complemental strand, 158050 - 157953
Alignment:
Q  20 ttgttatctttaaatttaaacaaaattttgttacctatgataatagttccatgaagagttaaaattctataaataacatgagtagtacttgttaaaaa 117  Q
    |||||| ||| |||||||||||||||||||||| |||| ||||| |||| |||||||||||||||| ||||||||| | |||||||| ||||||||||    
T  158050 ttgttaccttcaaatttaaacaaaattttgttatctataataatggttcaatgaagagttaaaattttataaataagacgagtagtaattgttaaaaa 157953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 19 - 124
Target Start/End: Original strand, 15507559 - 15507666
Alignment:
Q  19 tttgttatctttaaatttaaacaaaattttgttacctatga--taatagttccatgaagagttaaaattctataaataacatgagtagtacttgttaaaa 116  Q
    ||||||||||| ||||| ||||||||||||| ||||||| |  |||| |||||||||| ||||||||| |||||||||| ||||||| || |||||||||    
T  15507559 tttgttatcttaaaattcaaacaaaattttgctacctataaattaatggttccatgaatagttaaaatactataaataagatgagtaataattgttaaaa 15507658  T
Q  117 atttcaag 124  Q
    ||||||||    
T  15507659 atttcaag 15507666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 20 - 120
Target Start/End: Original strand, 33659809 - 33659909
Alignment:
Q  20 ttgttatctttaaatttaaacaaaattttgttacctatgataatagttccatgaagagttaaaattctataaataacatgagtagtacttgttaaaaatt 119  Q
    ||||||||||  |||||||||||||||||||||||||| | ||| ||||||| || || ||||||||||||||||| || ||||||| ||||||||||||    
T  33659809 ttgttatcttacaatttaaacaaaattttgttacctataacaatggttccataaatagctaaaattctataaataagataagtagtaattgttaaaaatt 33659908  T
Q  120 t 120  Q
    |    
T  33659909 t 33659909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 24 - 123
Target Start/End: Original strand, 11084033 - 11084130
Alignment:
Q  24 tatctttaaatttaaacaaaattttgttacctatgataatagttccatgaagagttaaaattctataaataacatgagtagtacttgttaaaaatttcaa 123  Q
    |||||| ||||||||||||| |||||| |||||| ||||| |||||||||| ||||||||||| |||||||| |||||||||| ||||||||||||||||    
T  11084033 tatcttaaaatttaaacaaa-ttttgtcacctataataatggttccatgaatagttaaaattc-ataaataagatgagtagtaattgttaaaaatttcaa 11084130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 20 - 95
Target Start/End: Original strand, 44898219 - 44898294
Alignment:
Q  20 ttgttatctttaaatttaaacaaaattttgttacctatgataatagttccatgaagagttaaaattctataaataa 95  Q
    |||||||||| |||||||||||||||||| |||||||| ||||| |||| ||||||||||||||||||||||||||    
T  44898219 ttgttatcttcaaatttaaacaaaattttattacctataataatggttctatgaagagttaaaattctataaataa 44898294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 30 - 124
Target Start/End: Original strand, 33024373 - 33024467
Alignment:
Q  30 taaatttaaacaaaattttgttacctatgataatagttccatgaagagttaaaattctataaataacatgagtagtacttgttaaaaatttcaag 124  Q
    |||||||||||||||||||||||||||| ||||| ||| |||||| |||||||||| |||||| || ||||||| || | |||||||||||||||    
T  33024373 taaatttaaacaaaattttgttacctataataatggtttcatgaatagttaaaattttataaacaaaatgagtattaatcgttaaaaatttcaag 33024467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 20 - 118
Target Start/End: Original strand, 4316818 - 4316916
Alignment:
Q  20 ttgttatctttaaatttaaacaaaattttgttacctatgataatagttccatgaagagttaaaattctataaataacatgagtagtacttgttaaaaat 118  Q
    ||||||||||||||||||||||||||||||| |||||| |||||  || ||| |||| ||||||||||| |||||| |||| ||||  |||||||||||    
T  4316818 ttgttatctttaaatttaaacaaaattttgtaacctataataatgatttcataaagacttaaaattctacaaataagatgaatagtcattgttaaaaat 4316916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 20 - 124
Target Start/End: Complemental strand, 7486276 - 7486178
Alignment:
Q  20 ttgttatctttaaatttaaacaaaattttgttacctatgataatagttccatgaagagttaaaattctataaataacatgagtagtacttgttaaaaatt 119  Q
    |||||||||| ||||||||||||||||| ||||     |||||| ||| ||||||||||||||||||||||||||| |||| || |||||||||||||||    
T  7486276 ttgttatcttcaaatttaaacaaaattt-gtta-----gataatggtttcatgaagagttaaaattctataaataagatgaataatacttgttaaaaatt 7486183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 20 - 124
Target Start/End: Complemental strand, 42872244 - 42872140
Alignment:
Q  20 ttgttatctttaaatttaaacaaaattttgttacctatgataatagttccatgaagagttaaaattctataaataacatgagtagtacttgttaaaaatt 119  Q
    |||||||||| |||||||||||||| |||||||||||| | ||| |||  ||||| | |||||||| ||||||| | ||||||| || ||||||||||||    
T  42872244 ttgttatcttaaaatttaaacaaaactttgttacctataacaatggttttatgaataattaaaattttataaatcagatgagtaataattgttaaaaatt 42872145  T
Q  120 tcaag 124  Q
    |||||    
T  42872144 tcaag 42872140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 45 - 124
Target Start/End: Complemental strand, 36243982 - 36243903
Alignment:
Q  45 ttttgttacctatgataatagttccatgaagagttaaaattctataaataacatgagtagtacttgttaaaaatttcaag 124  Q
    |||| |||||||| ||||||||| |||| | |||||||||||||||||||| ||||||| || |||||||||||||||||    
T  36243982 tttttttacctataataatagtttcatggatagttaaaattctataaataagatgagtaataattgttaaaaatttcaag 36243903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 212 - 271
Target Start/End: Complemental strand, 7485868 - 7485809
Alignment:
Q  212 aagatagtagtaactaacaattctttgttacatattaaatttattggaaagataaagtgt 271  Q
    |||| ||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||    
T  7485868 aagagagtagtaactaacaattgtttgttacatactaaatttattgcaaagataaagtgt 7485809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 20 - 124
Target Start/End: Original strand, 21252687 - 21252787
Alignment:
Q  20 ttgttatctttaaatttaaacaaaattttgttacctatgataatagttccatgaagagttaaaattctataaataacatgagtagtacttgttaaaaatt 119  Q
    |||||||||||||||||||||||||||| ||| |  |    ||| |||||| |||||||||||||||||||||||| |||||||  | ||||||||||||    
T  21252687 ttgttatctttaaatttaaacaaaattt-gttgcaaac---aatggttccaagaagagttaaaattctataaataagatgagtaacaattgttaaaaatt 21252782  T
Q  120 tcaag 124  Q
    |||||    
T  21252783 tcaag 21252787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 20 - 74
Target Start/End: Original strand, 27746598 - 27746652
Alignment:
Q  20 ttgttatctttaaatttaaacaaaattttgttacctatgataatagttccatgaa 74  Q
    |||||||||| ||||||||||||||||||| ||||||||||||| ||||||||||    
T  27746598 ttgttatcttcaaatttaaacaaaattttgctacctatgataatggttccatgaa 27746652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 20 - 124
Target Start/End: Complemental strand, 29408751 - 29408650
Alignment:
Q  20 ttgttatctttaaatttaaacaaaattttgttacctatgataatagttccatgaagagttaaaattctataaataacatgagtagtacttgttaaaaatt 119  Q
    |||||||||| |||||||||||||||||||||  |||  | ||| ||||||  ||||||||||||||||||||||| |||||||  | |||||||| |||    
T  29408751 ttgttatcttcaaatttaaacaaaattttgtt--ctaa-acaatggttccaataagagttaaaattctataaataaaatgagtaacaattgttaaagatt 29408655  T
Q  120 tcaag 124  Q
    |||||    
T  29408654 tcaag 29408650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 34 - 91
Target Start/End: Complemental strand, 34847108 - 34847051
Alignment:
Q  34 tttaaacaaaattttgttacctatgataatagttccatgaagagttaaaattctataa 91  Q
    |||||||||||||||||||||| ||||||||| ||||||||||||  |||||||||||    
T  34847108 tttaaacaaaattttgttacctttgataatagatccatgaagagtagaaattctataa 34847051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 343 - 399
Target Start/End: Complemental strand, 7485736 - 7485680
Alignment:
Q  343 tttgctatttttatgttaaaattctaaaacgatgcttaaaaaggaacggagggagta 399  Q
    ||||||||||||  ||||||||||||||||||| |||| ||||||||||||||||||    
T  7485736 tttgctatttttgagttaaaattctaaaacgatccttacaaaggaacggagggagta 7485680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 340 - 399
Target Start/End: Complemental strand, 34424421 - 34424362
Alignment:
Q  340 cactttgctatttttatgttaaaattctaaaacgatgcttaaaaaggaacggagggagta 399  Q
    ||||| ||||||||| |||||||||| ||||||||  |||||||||||||||| ||||||    
T  34424421 cacttcgctatttttgtgttaaaattttaaaacgacacttaaaaaggaacggatggagta 34424362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 340 - 398
Target Start/End: Original strand, 33660702 - 33660760
Alignment:
Q  340 cactttgctatttttatgttaaaattctaaaacgatgcttaaaaaggaacggagggagt 398  Q
    ||||||||||||||| | |||| ||||||||||||  |||||||||||||||| |||||    
T  33660702 cactttgctatttttgtattaatattctaaaacgacacttaaaaaggaacggatggagt 33660760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 41 - 83
Target Start/End: Original strand, 42758096 - 42758138
Alignment:
Q  41 aaaattttgttacctatgataatagttccatgaagagttaaaa 83  Q
    |||| |||||||| |||||||||||||||||||||||||||||    
T  42758096 aaaaatttgttacttatgataatagttccatgaagagttaaaa 42758138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 241 - 274
Target Start/End: Original strand, 1397961 - 1397994
Alignment:
Q  241 acatattaaatttattggaaagataaagtgtgtg 274  Q
    ||||||||||||||||||||||||||||||||||    
T  1397961 acatattaaatttattggaaagataaagtgtgtg 1397994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 241 - 274
Target Start/End: Complemental strand, 16806168 - 16806135
Alignment:
Q  241 acatattaaatttattggaaagataaagtgtgtg 274  Q
    ||||||||||||||||||||||||||||||||||    
T  16806168 acatattaaatttattggaaagataaagtgtgtg 16806135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 241 - 274
Target Start/End: Complemental strand, 16845449 - 16845416
Alignment:
Q  241 acatattaaatttattggaaagataaagtgtgtg 274  Q
    ||||||||||||||||||||||||||||||||||    
T  16845449 acatattaaatttattggaaagataaagtgtgtg 16845416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 340 - 396
Target Start/End: Complemental strand, 4959022 - 4958966
Alignment:
Q  340 cactttgctatttttatgttaaaattctaaaacgatgcttaaaaaggaacggaggga 396  Q
    ||||||||||||||  |||||||| |||||||| |  ||||||||||||||||||||    
T  4959022 cactttgctattttagtgttaaaactctaaaacaacacttaaaaaggaacggaggga 4958966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 340 - 400
Target Start/End: Complemental strand, 20170957 - 20170897
Alignment:
Q  340 cactttgctatttttatgttaaaattctaaaacgatgcttaaaaaggaacggagggagtat 400  Q
    ||||| |||||||  ||||||| ||||||||||||  |||||| |||||||||||||||||    
T  20170957 cacttcgctatttcaatgttaatattctaaaacgacacttaaagaggaacggagggagtat 20170897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 340 - 399
Target Start/End: Original strand, 12413041 - 12413100
Alignment:
Q  340 cactttgctatttttatgttaaaattctaaaacgatgcttaaaaaggaacggagggagta 399  Q
    ||||| ||| ||||| |||||||||||||||||||  ||||||||||||| |||| ||||    
T  12413041 cacttcgctttttttgtgttaaaattctaaaacgacacttaaaaaggaacagaggaagta 12413100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 340 - 399
Target Start/End: Original strand, 12425101 - 12425160
Alignment:
Q  340 cactttgctatttttatgttaaaattctaaaacgatgcttaaaaaggaacggagggagta 399  Q
    ||||| ||| ||||| |||||||||||||||||||  ||||||||||||| |||| ||||    
T  12425101 cacttcgctttttttgtgttaaaattctaaaacgacacttaaaaaggaacagaggaagta 12425160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 243 - 274
Target Start/End: Complemental strand, 45271979 - 45271948
Alignment:
Q  243 atattaaatttattggaaagataaagtgtgtg 274  Q
    ||||||||||||||||||||||||||||||||    
T  45271979 atattaaatttattggaaagataaagtgtgtg 45271948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 23 - 124
Target Start/End: Original strand, 1397586 - 1397684
Alignment:
Q  23 ttatctttaaatttaaacaaaattttgttacctatgataatagttccatgaagagttaaaattctataaataacatgagtagtacttgttaaaaatttca 122  Q
    |||||||||||||||||||||||||||||  | |  | | ||||| || |||| ||||||||||||||||||| ||||| |  | |||||| ||||||||    
T  1397586 ttatctttaaatttaaacaaaattttgtt--cga-aacagtagtttcaagaagtgttaaaattctataaataagatgaggaacaattgttacaaatttca 1397682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 54
Target Start/End: Complemental strand, 25965836 - 25965802
Alignment:
Q  20 ttgttatctttaaatttaaacaaaattttgttacc 54  Q
    |||||||||| ||||||||||||||||||||||||    
T  25965836 ttgttatcttcaaatttaaacaaaattttgttacc 25965802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 346 - 392
Target Start/End: Original strand, 27747066 - 27747112
Alignment:
Q  346 gctatttttatgttaaaattctaaaacgatgcttaaaaaggaacgga 392  Q
    ||||||||| | |||||||||||||||||  ||||||||||||||||    
T  27747066 gctatttttgttttaaaattctaaaacgacacttaaaaaggaacgga 27747112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 241 - 274
Target Start/End: Original strand, 11084373 - 11084406
Alignment:
Q  241 acatattaaatttattggaaagataaagtgtgtg 274  Q
    ||||||||||||||||||||||| ||||||||||    
T  11084373 acatattaaatttattggaaagagaaagtgtgtg 11084406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 23 - 60
Target Start/End: Original strand, 12411784 - 12411821
Alignment:
Q  23 ttatctttaaatttaaacaaaattttgttacctatgat 60  Q
    ||||||| |||||||||||||||||||||| |||||||    
T  12411784 ttatcttcaaatttaaacaaaattttgttatctatgat 12411821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #40
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 23 - 60
Target Start/End: Original strand, 12423844 - 12423881
Alignment:
Q  23 ttatctttaaatttaaacaaaattttgttacctatgat 60  Q
    ||||||| |||||||||||||||||||||| |||||||    
T  12423844 ttatcttcaaatttaaacaaaattttgttatctatgat 12423881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #41
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 241 - 274
Target Start/End: Original strand, 21253057 - 21253090
Alignment:
Q  241 acatattaaatttattggaaagataaagtgtgtg 274  Q
    ||||||||||||||||| ||||||||||||||||    
T  21253057 acatattaaatttattgaaaagataaagtgtgtg 21253090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #42
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 241 - 274
Target Start/End: Complemental strand, 25713955 - 25713922
Alignment:
Q  241 acatattaaatttattggaaagataaagtgtgtg 274  Q
    ||||||||||||||||||||||| ||||||||||    
T  25713955 acatattaaatttattggaaagagaaagtgtgtg 25713922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #43
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 241 - 274
Target Start/End: Original strand, 41541648 - 41541681
Alignment:
Q  241 acatattaaatttattggaaagataaagtgtgtg 274  Q
    ||||||||||||||||||||||| ||||||||||    
T  41541648 acatattaaatttattggaaagagaaagtgtgtg 41541681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 147; Significance: 2e-77; HSPs: 43)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 20 - 274
Target Start/End: Complemental strand, 21959686 - 21959434
Alignment:
Q  20 ttgttatctttaaatttaaacaaaattttgttacctatgataatagttccatgaagagttaaaattctataaataacatgagtagtacttgttaaaaatt 119  Q
    |||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21959686 ttgttatcttcaaatttaaacaaaatgttgttacctatgataatagttccatgaagagttaaaattctataaataacatgagtagtacttgttaaaaatt 21959587  T
Q  120 tcaagagatatccataatatttagaaaattggaaattgtgtttcttatgagagaaagataaagtgcgcnnnnnnntcgaaatttcttggagaaagatagt 219  Q
    |||||| |||| || |||||||| ||||||| ||||  | ||| ||||||||||||||||||| || |       ||||||| | ||| ||||||| |||    
T  21959586 tcaagaaatatgcacaatatttataaaattgaaaat--tatttgttatgagagaaagataaagcgcacaaaaaaatcgaaatatgttgaagaaagagagt 21959489  T
Q  220 agtaactaacaattctttgttacatattaaatttattggaaagataaagtgtgtg 274  Q
    |||||||||||||| |||||||||||||| ||||||| |||| ||||||||||||    
T  21959488 agtaactaacaattgtttgttacatattatatttattagaaatataaagtgtgtg 21959434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 23 - 270
Target Start/End: Complemental strand, 7259666 - 7259416
Alignment:
Q  23 ttatctttaaatttaaacaaaattttgttacctatgataat------agttccatgaagagttaaaattctataaataacatgagtagtacttgttaaaa 116  Q
    ||||||| |||||||||||||||||||||||||||||||||      |||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  7259666 ttatcttcaaatttaaacaaaattttgttacctatgataatgataatagttccatgaagagttaaaattttataaataacatgagtagtacttgttaaaa 7259567  T
Q  117 atttcaagagatatccataatatttagaaaattggaaattgtgtttcttatgagagaaagataaagtgcgcnnnnnnntcgaaatttcttggagaaagat 216  Q
    |||||||||||||| || |||||||||||||||| ||||  ||||| |||||||||||||||||||  | |       | | | ||| |||||||||||     
T  7259566 atttcaagagatatgcacaatatttagaaaattgaaaat--tgtttgttatgagagaaagataaagcacacaaaaaaataggagtttgttggagaaagag 7259469  T
Q  217 agtagtaactaacaattctttgttacatattaaatttattggaaagataaagtg 270  Q
    | ||||||||||||||| ||||||||||||||| ||||||||||||||||||||    
T  7259468 a-tagtaactaacaattgtttgttacatattaattttattggaaagataaagtg 7259416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 20 - 120
Target Start/End: Original strand, 3751570 - 3751670
Alignment:
Q  20 ttgttatctttaaatttaaacaaaattttgttacctatgataatagttccatgaagagttaaaattctataaataacatgagtagtacttgttaaaaatt 119  Q
    ||||||||||||||||||||||||||||| |||||||| ||||| ||| ||||||||||||||||||||||||||| |||||||||| || |||||||||    
T  3751570 ttgttatctttaaatttaaacaaaattttcttacctataataatggtttcatgaagagttaaaattctataaataagatgagtagtaatttttaaaaatt 3751669  T
Q  120 t 120  Q
    |    
T  3751670 t 3751670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 20 - 124
Target Start/End: Original strand, 296562 - 296664
Alignment:
Q  20 ttgttatctttaaatttaaacaaaattttgttacctatgataatagttccatgaagagttaaaattctataaataacatgagtagtacttgttaaaaatt 119  Q
    |||||||||| ||||||||||||||||||||||  ||| ||||| |||| ||||| |||||||||||||||||||| |||||||||| ||||||||||||    
T  296562 ttgttatcttaaaatttaaacaaaattttgtta--tataataatggttctatgaatagttaaaattctataaataagatgagtagtaattgttaaaaatt 296659  T
Q  120 tcaag 124  Q
    |||||    
T  296660 tcaag 296664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 20 - 124
Target Start/End: Complemental strand, 6512543 - 6512439
Alignment:
Q  20 ttgttatctttaaatttaaacaaaattttgttacctatgataatagttccatgaagagttaaaattctataaataacatgagtagtacttgttaaaaatt 119  Q
    |||||||| | ||||||| ||||||||||||||||||| ||||| ||| ||||||||||||| ||| ||||||||| ||||| |||| ||||||||||||    
T  6512543 ttgttatcctcaaatttatacaaaattttgttacctataataatggtttcatgaagagttaacattttataaataagatgaggagtagttgttaaaaatt 6512444  T
Q  120 tcaag 124  Q
    |||||    
T  6512443 tcaag 6512439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 20 - 124
Target Start/End: Original strand, 6749092 - 6749196
Alignment:
Q  20 ttgttatctttaaatttaaacaaaattttgttacctatgataatagttccatgaagagttaaaattctataaataacatgagtagtacttgttaaaaatt 119  Q
    |||||||| | ||||||| ||||||||||| ||||||| ||||| ||| ||| ||||||||||||| ||||||||| |||||||||| ||||||||||||    
T  6749092 ttgttatcctcaaatttatacaaaattttgctacctatcataatggtttcataaagagttaaaattttataaataagatgagtagtagttgttaaaaatt 6749191  T
Q  120 tcaag 124  Q
    |||||    
T  6749192 tcaag 6749196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 20 - 118
Target Start/End: Complemental strand, 15638468 - 15638370
Alignment:
Q  20 ttgttatctttaaatttaaacaaaattttgttacctatgataatagttccatgaagagttaaaattctataaataacatgagtagtacttgttaaaaat 118  Q
    |||||||||| ||||| ||||||||||||||||||||| ||||| ||| |||||| ||||||||||||  |||||| |||||||||| |||||||||||    
T  15638468 ttgttatcttaaaattcaaacaaaattttgttacctataataatggtttcatgaatagttaaaattcttaaaataagatgagtagtaattgttaaaaat 15638370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 20 - 124
Target Start/End: Original strand, 9588872 - 9588976
Alignment:
Q  20 ttgttatctttaaatttaaacaaaattttgttacctatgataatagttccatgaagagttaaaattctataaataacatgagtagtacttgttaaaaatt 119  Q
    |||||||||| |||||||||||||| |||||||||||| |||||  || |||||| |||||||||| ||||||||| |||||||| | || |||||||||    
T  9588872 ttgttatcttaaaatttaaacaaaactttgttacctataataatgatttcatgaatagttaaaattatataaataagatgagtaggaattattaaaaatt 9588971  T
Q  120 tcaag 124  Q
    |||||    
T  9588972 tcaag 9588976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 199 - 274
Target Start/End: Original strand, 13779103 - 13779178
Alignment:
Q  199 aatttcttggagaaagatagtagtaactaacaattctttgttacatattaaatttattggaaagataaagtgtgtg 274  Q
    ||||| ||||||||||| ||||||||||||||||| | |||||||||||||||||||||||||||||||| |||||    
T  13779103 aatttgttggagaaagagagtagtaactaacaattgtctgttacatattaaatttattggaaagataaagggtgtg 13779178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 29 - 124
Target Start/End: Complemental strand, 34824158 - 34824063
Alignment:
Q  29 ttaaatttaaacaaaattttgttacctatgataatagttccatgaagagttaaaattctataaataacatgagtagtacttgttaaaaatttcaag 124  Q
    ||||||||||||||||||||||| | |||| ||||||||||||||| ||||| |||||||| ||||| ||| |||||| |||||||||| ||||||    
T  34824158 ttaaatttaaacaaaattttgttgcttatgttaatagttccatgaatagttataattctatgaataagatgggtagtaattgttaaaaaattcaag 34824063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 31 - 124
Target Start/End: Complemental strand, 6472700 - 6472607
Alignment:
Q  31 aaatttaaacaaaattttgttacctatgataatagttccatgaagagttaaaattctataaataacatgagtagtacttgttaaaaatttcaag 124  Q
    ||||||| ||||||||||||||||||  ||| | ||| ||| ||||||||||||| ||||||||| |||||||||| |||||||||||||||||    
T  6472700 aaatttatacaaaattttgttacctacaatattggtttcataaagagttaaaattttataaataagatgagtagtagttgttaaaaatttcaag 6472607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 197 - 273
Target Start/End: Complemental strand, 25841650 - 25841574
Alignment:
Q  197 gaaatttcttggagaaagatagtagtaactaacaattctttgttacatattaaatttattggaaagataaagtgtgt 273  Q
    ||||||| ||||||||||| ||||||||||||||||| |||||||  |||||||||||||||||||||||| |||||    
T  25841650 gaaatttgttggagaaagagagtagtaactaacaattgtttgttatttattaaatttattggaaagataaaatgtgt 25841574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 340 - 400
Target Start/End: Complemental strand, 7259344 - 7259284
Alignment:
Q  340 cactttgctatttttatgttaaaattctaaaacgatgcttaaaaaggaacggagggagtat 400  Q
    ||||||||||||||| |||||||||||||||||||  ||||||||||||||||||||||||    
T  7259344 cactttgctatttttgtgttaaaattctaaaacgacacttaaaaaggaacggagggagtat 7259284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 21 - 123
Target Start/End: Complemental strand, 23701923 - 23701822
Alignment:
Q  21 tgttatctttaaatttaaacaaaattttgttacctatgataatagttccatgaagagttaaaattctataaataacatgagtagtacttgttaaaaattt 120  Q
    |||||||||||||||||||||||||||||||| |||| | ||| ||| |||||| | || ||||||||||||||| |||||| |   |||||||||||||    
T  23701923 tgttatctttaaatttaaacaaaattttgttatctataacaatggtttcatgaataattgaaattctataaataagatgagt-gacattgttaaaaattt 23701825  T
Q  121 caa 123  Q
    |||    
T  23701824 caa 23701822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 21 - 123
Target Start/End: Complemental strand, 23720378 - 23720277
Alignment:
Q  21 tgttatctttaaatttaaacaaaattttgttacctatgataatagttccatgaagagttaaaattctataaataacatgagtagtacttgttaaaaattt 120  Q
    |||||||||||||||||||||||||||||||| |||| | ||| ||| |||||| | || ||||||||||||||| |||||| |   |||||||||||||    
T  23720378 tgttatctttaaatttaaacaaaattttgttatctataacaatggtttcatgaataattgaaattctataaataagatgagt-gacattgttaaaaattt 23720280  T
Q  121 caa 123  Q
    |||    
T  23720279 caa 23720277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 21 - 123
Target Start/End: Complemental strand, 23738834 - 23738733
Alignment:
Q  21 tgttatctttaaatttaaacaaaattttgttacctatgataatagttccatgaagagttaaaattctataaataacatgagtagtacttgttaaaaattt 120  Q
    |||||||||||||||||||||||||||||||| |||| | ||| ||| |||||| | || ||||||||||||||| |||||| |   |||||||||||||    
T  23738834 tgttatctttaaatttaaacaaaattttgttatctataacaatggtttcatgaataattgaaattctataaataagatgagt-gacattgttaaaaattt 23738736  T
Q  121 caa 123  Q
    |||    
T  23738735 caa 23738733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 20 - 124
Target Start/End: Complemental strand, 45759906 - 45759805
Alignment:
Q  20 ttgttatctttaaatttaaacaaaattttgttacctatgataatagttccatgaagagttaaaattctataaataacatgagtagtacttgttaaaaatt 119  Q
    ||||||||||||||||||||||||||||  ||||   | | ||| |||||| |||||||||||||| ||||||||| |||||||| | |||||||| |||    
T  45759906 ttgttatctttaaatttaaacaaaatttcattac---taacaatggttccaagaagagttaaaattgtataaataagatgagtagcaattgttaaatatt 45759810  T
Q  120 tcaag 124  Q
    |||||    
T  45759809 tcaag 45759805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 20 - 124
Target Start/End: Original strand, 2093889 - 2093990
Alignment:
Q  20 ttgttatctttaaatttaaacaaaattttgttacctatgataatagttccatgaagagttaaaattctataaataacatgagtagtacttgttaaaaatt 119  Q
    |||||||||| |||||||||| ||||||||||  |||  ||||| |||||| |||||||||||||| ||||||||| |||||||  | ||||||||||||    
T  2093889 ttgttatcttcaaatttaaactaaattttgtt--ctaa-ataatggttccaagaagagttaaaattttataaataagatgagtaacaattgttaaaaatt 2093985  T
Q  120 tcaag 124  Q
    |||||    
T  2093986 tcaag 2093990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 20 - 124
Target Start/End: Original strand, 375852 - 375952
Alignment:
Q  20 ttgttatctttaaatttaaacaaaattttgttacctatgataatagttccatgaagagttaaaattctataaataacatgagtagtacttgttaaaaatt 119  Q
    |||||||| | |||||| |||||||||||||||||||| |||||  ||    ||| |||||||||| ||||||||| ||||| |||| ||||||||||||    
T  375852 ttgttatcctaaaattttaacaaaattttgttacctataataatgatt----gaatagttaaaattttataaataaaatgagcagtaattgttaaaaatt 375947  T
Q  120 tcaag 124  Q
    |||||    
T  375948 tcaag 375952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 21 - 123
Target Start/End: Complemental strand, 23772219 - 23772118
Alignment:
Q  21 tgttatctttaaatttaaacaaaattttgttacctatgataatagttccatgaagagttaaaattctataaataacatgagtagtacttgttaaaaattt 120  Q
    |||||||||||||||||||||||||||||||| |||| | ||| ||| ||| || | || ||||||||||||||| |||||| |   |||||||||||||    
T  23772219 tgttatctttaaatttaaacaaaattttgttatctataacaatggtttcataaataattgaaattctataaataagatgagt-gacattgttaaaaattt 23772121  T
Q  121 caa 123  Q
    |||    
T  23772120 caa 23772118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 20 - 124
Target Start/End: Complemental strand, 37030954 - 37030853
Alignment:
Q  20 ttgttatctttaaatttaaacaaaattttgttacctatgataatagttccatgaagagttaaaattctataaataacatgagtagtacttgttaaaaatt 119  Q
    |||||||||| |||||||||||||||||||||||  |    ||| |||||| ||||||||||||||| |||| ||| |||||||  | ||||||||||||    
T  37030954 ttgttatcttcaaatttaaacaaaattttgttacaaac---aatggttccaagaagagttaaaattcgataactaagatgagtatcaattgttaaaaatt 37030858  T
Q  120 tcaag 124  Q
    |||||    
T  37030857 tcaag 37030853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 72 - 124
Target Start/End: Original strand, 27817596 - 27817648
Alignment:
Q  72 gaagagttaaaattctataaataacatgagtagtacttgttaaaaatttcaag 124  Q
    |||||||||||||||||||||||| |||||| ||| |||||||||||||||||    
T  27817596 gaagagttaaaattctataaataagatgagtggtaattgttaaaaatttcaag 27817648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 31 - 95
Target Start/End: Complemental strand, 29556490 - 29556426
Alignment:
Q  31 aaatttaaacaaaattttgttacctatgataatagttccatgaagagttaaaattctataaataa 95  Q
    ||||||||||||||||||||||||| | ||||| ||| |||||| |||| |||||||||||||||    
T  29556490 aaatttaaacaaaattttgttacctttaataatggtttcatgaatagttgaaattctataaataa 29556426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 23 - 124
Target Start/End: Original strand, 20841424 - 20841522
Alignment:
Q  23 ttatctttaaatttaaacaaaattttgttacctatgataatagttccatgaagagttaaaattctataaataacatgagtagtacttgttaaaaatttca 122  Q
    |||||||||||||||||||||||| ||||||  |    ||| ||| || ||| |||||||||||||||||||| |||||||  | |||||||||||||||    
T  20841424 ttatctttaaatttaaacaaaattgtgttacaaac---aatggtttcaagaaaagttaaaattctataaataagatgagtaacaattgttaaaaatttca 20841520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 20 - 95
Target Start/End: Complemental strand, 38751070 - 38750995
Alignment:
Q  20 ttgttatctttaaatttaaacaaaattttgttacctatgataatagttccatgaagagttaaaattctataaataa 95  Q
    |||||||||  | ||||||||||||||||||||| ||| |||||  ||  ||||||||||||||||||||||||||    
T  38751070 ttgttatctacagatttaaacaaaattttgttacatataataatgattttatgaagagttaaaattctataaataa 38750995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 22 - 124
Target Start/End: Complemental strand, 42735588 - 42735489
Alignment:
Q  22 gttatctttaaatttaaacaaaattttgttacctatgataatagttccatgaagagttaaaattctataaataacatgagtagtacttgttaaaaatttc 121  Q
    ||||||||||||||||||||||| ||||||||| | |   || ||||||  || |||||| ||||||||||||| |||||||  | |||||| |||||||    
T  42735588 gttatctttaaatttaaacaaaaatttgttaccaacg---atggttccaaaaaaagttaagattctataaataagatgagtatcaattgttagaaatttc 42735492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 21 - 124
Target Start/End: Original strand, 45646708 - 45646808
Alignment:
Q  21 tgttatctttaaatttaaacaaaattttgttacctatgataatagttccatgaagagttaaaattctataaataacatgagtagtacttgttaaaaattt 120  Q
    ||||||||  ||||||||||||||||||||| || |  | ||| |||||| |||||||||||||| ||||||||| | ||||||   |||||||||||||    
T  45646708 tgttatctgcaaatttaaacaaaattttgtt-ccaa--acaatggttccaagaagagttaaaattttataaataagacgagtagcgattgttaaaaattt 45646804  T
Q  121 caag 124  Q
    ||||    
T  45646805 caag 45646808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 73 - 124
Target Start/End: Original strand, 45667607 - 45667658
Alignment:
Q  73 aagagttaaaattctataaataacatgagtagtacttgttaaaaatttcaag 124  Q
    ||||||||||||||||||||||| |||||||  | |||||||||||||||||    
T  45667607 aagagttaaaattctataaataagatgagtaacaattgttaaaaatttcaag 45667658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 241 - 274
Target Start/End: Complemental strand, 38750599 - 38750566
Alignment:
Q  241 acatattaaatttattggaaagataaagtgtgtg 274  Q
    ||||||||||||||||||||||||||||||||||    
T  38750599 acatattaaatttattggaaagataaagtgtgtg 38750566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 241 - 274
Target Start/End: Original strand, 45647070 - 45647103
Alignment:
Q  241 acatattaaatttattggaaagataaagtgtgtg 274  Q
    ||||||||||||||||||||||||||||||||||    
T  45647070 acatattaaatttattggaaagataaagtgtgtg 45647103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 76 - 124
Target Start/End: Original strand, 5493713 - 5493761
Alignment:
Q  76 agttaaaattctataaataacatgagtagtacttgttaaaaatttcaag 124  Q
    |||||||||||||||||||| |||||||| | |||||||||| ||||||    
T  5493713 agttaaaattctataaataagatgagtagaaattgttaaaaaattcaag 5493761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 243 - 275
Target Start/End: Original strand, 21916039 - 21916071
Alignment:
Q  243 atattaaatttattggaaagataaagtgtgtgt 275  Q
    |||||||||||||||||||||||||||||||||    
T  21916039 atattaaatttattggaaagataaagtgtgtgt 21916071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 241 - 272
Target Start/End: Complemental strand, 21934047 - 21934016
Alignment:
Q  241 acatattaaatttattggaaagataaagtgtg 272  Q
    ||||||||||||||||||||||||||||||||    
T  21934047 acatattaaatttattggaaagataaagtgtg 21934016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 124
Target Start/End: Original strand, 34668785 - 34668887
Alignment:
Q  19 tttgttatctttaaatttaaacaaaattttgttacctatgataatagttccatgaagagttaaaattctataaataacatgagtagtacttgttaaaaat 118  Q
    |||||||||||||||||||||||||||| | ||||  |    ||| ||| ||  || |||||||||||||||||||| | |||||| | | |||||||||    
T  34668785 tttgttatctttaaatttaaacaaaattgtcttacaaac---aatggtttcaaaaaaagttaaaattctataaataagaagagtagcaatggttaaaaat 34668881  T
Q  119 ttcaag 124  Q
    ||||||    
T  34668882 ttcaag 34668887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 31 - 123
Target Start/End: Complemental strand, 2440625 - 2440535
Alignment:
Q  31 aaatttaaacaaaattttgttacc-tatgataatagttccatgaagagttaaaattctataaataacatgagtagtacttgttaaaaatttcaa 123  Q
    |||||||||||||| ||||||||| |||  |||| ||| |||||| |||||||||||||| ||||| ||| ||||||  ||||||||| |||||    
T  2440625 aaatttaaacaaaagtttgttaccgtat--taatggtttcatgaatagttaaaattctat-aataagatgggtagtaaatgttaaaaaattcaa 2440535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 340 - 402
Target Start/End: Complemental strand, 21933949 - 21933887
Alignment:
Q  340 cactttgctatttttatgttaaaattctaaaacgatgcttaaaaaggaacggagggagtatta 402  Q
    |||||||||||||| |||  ||  |||||||||||  |||||||| |||||||||||||||||    
T  21933949 cactttgctattttcatgaaaattttctaaaacgacacttaaaaaagaacggagggagtatta 21933887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 241 - 271
Target Start/End: Complemental strand, 37030514 - 37030484
Alignment:
Q  241 acatattaaatttattggaaagataaagtgt 271  Q
    |||||||||||||||||||||||||||||||    
T  37030514 acatattaaatttattggaaagataaagtgt 37030484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 53
Target Start/End: Original strand, 2599164 - 2599197
Alignment:
Q  20 ttgttatctttaaatttaaacaaaattttgttac 53  Q
    ||||||||||||||||||||||||||| ||||||    
T  2599164 ttgttatctttaaatttaaacaaaattgtgttac 2599197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 346 - 399
Target Start/End: Complemental strand, 16237029 - 16236976
Alignment:
Q  346 gctatttttatgttaaaattctaaaacgatgcttaaaaaggaacggagggagta 399  Q
    ||||||||| ||||||  |||||||| ||  |||||||||||||||||||||||    
T  16237029 gctatttttgtgttaattttctaaaaagacacttaaaaaggaacggagggagta 16236976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 241 - 274
Target Start/End: Original strand, 45667911 - 45667944
Alignment:
Q  241 acatattaaatttattggaaagataaagtgtgtg 274  Q
    ||||||||||||||||| ||||||||||||||||    
T  45667911 acatattaaatttattgaaaagataaagtgtgtg 45667944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 340 - 400
Target Start/End: Original strand, 13779244 - 13779302
Alignment:
Q  340 cactttgctatttttatgttaaaattctaaaacgatgcttaaaaaggaacggagggagtat 400  Q
    ||||||||||||||  ||||||||||| |||||||   |||||||||||||||||||||||    
T  13779244 cactttgctattttc-tgttaaaattc-aaaacgaaaattaaaaaggaacggagggagtat 13779302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 70 - 124
Target Start/End: Complemental strand, 21934460 - 21934409
Alignment:
Q  70 atgaagagttaaaattctataaataacatgagtagtacttgttaaaaatttcaag 124  Q
    |||||||||||||||||||||||||| |||   | || |||||||||||||||||    
T  21934460 atgaagagttaaaattctataaataagatg---aataattgttaaaaatttcaag 21934409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 348 - 400
Target Start/End: Complemental strand, 21959359 - 21959307
Alignment:
Q  348 tatttttatgttaaaattctaaaacgatgcttaaaaaggaacggagggagtat 400  Q
    |||||||||||||||||| ||||||||  |||||||| ||||| | |||||||    
T  21959359 tatttttatgttaaaattttaaaacgacacttaaaaaagaacgaaaggagtat 21959307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1130 (Bit Score: 141; Significance: 9e-74; HSPs: 2)
Name: scaffold1130
Description:

Target: scaffold1130; HSP #1
Raw Score: 141; E-Value: 9e-74
Query Start/End: Original strand, 20 - 267
Target Start/End: Original strand, 487 - 733
Alignment:
Q  20 ttgttatctttaaatttaaacaaaattttgttacctatgataatagttccatgaagagttaaaattctataaataacatgagtagtacttgtt-aaaaat 118  Q
    |||| ||||| |||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  487 ttgtcatcttcaaatttaaacaaaattttgttatctatgataatagtttcatgaagagttaaaattctataaataacatgagtagtacttgttaaaaaat 586  T
Q  119 ttcaagagatatccataatatttagaaaattggaaattgtgtttcttatgagagaaagataaagtgcgcnnnnnnntcgaaatttcttggagaaagatag 218  Q
    |||||||||||| ||||||||||||||||||| ||||  ||||| ||||||||||||||||||| ||         | | ||||| ||||||||||| ||    
T  587 ttcaagagatatgcataatatttagaaaattgaaaat--tgtttgttatgagagaaagataaagcgcataaaaatataggaatttgttggagaaagagag 684  T
Q  219 tagtaactaacaattctttgttacatattaaatttattggaaagataaa 267  Q
    ||||||| || |||| |||||||||||||||||||||||||||||||||    
T  685 tagtaacaaaaaattgtttgttacatattaaatttattggaaagataaa 733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1130; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 348 - 400
Target Start/End: Original strand, 815 - 867
Alignment:
Q  348 tatttttatgttaaaattctaaaacgatgcttaaaaaggaacggagggagtat 400  Q
    |||||||||||||||||| ||||||||  ||||||||||||||||||||||||    
T  815 tatttttatgttaaaattataaaacgacacttaaaaaggaacggagggagtat 867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 139; Significance: 1e-72; HSPs: 34)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 20 - 274
Target Start/End: Complemental strand, 3443683 - 3443431
Alignment:
Q  20 ttgttatctttaaatttaaacaaaattttgttacctatgataatagttccatgaagagttaaaattctataaataacatgagtagtacttgttaaaaatt 119  Q
    |||||||||| |||||||||| ||||||||||| ||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||    
T  3443683 ttgttatcttcaaatttaaaccaaattttgttatctatgataatagttccatgaaaagttaaaattctataaataatatgagtagtacttgttaaaaatt 3443584  T
Q  120 tcaagagatatccataatatttagaaaattggaaattgtgtttcttatgagagaaagataaagtgcgcnnnnnnntcgaaatttcttggagaaagatagt 219  Q
     |||||||||| || |||||||||||||||| ||||  ||||| |||| |||||||||||||||||||       | | ||||| || |||||| | |||    
T  3443583 ccaagagatatgcacaatatttagaaaattgaaaat--tgtttgttataagagaaagataaagtgcgcaaaaaaataggaatttgtttgagaaaaagagt 3443486  T
Q  220 agtaactaacaattctttgttacatattaaatttattggaaagataaagtgtgtg 274  Q
    ||||||| | |||| ||||||||||||||||||||||||| ||||||||||||||    
T  3443485 agtaactcataattgtttgttacatattaaatttattggatagataaagtgtgtg 3443431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 20 - 274
Target Start/End: Original strand, 9455345 - 9455593
Alignment:
Q  20 ttgttatctttaaatttaaacaaaattttgttacctatgataatagttccatgaagagttaaaattctataaataacatgagtagtacttgttaaaaatt 119  Q
    |||||||||| ||||||||||||  ||||||||||| | |||||| || |||||||| ||||||||||||||||||||| ||||||||||||| ||||||    
T  9455345 ttgttatcttcaaatttaaacaa--ttttgttaccttt-ataataatttcatgaagaattaaaattctataaataacattagtagtacttgtt-aaaatt 9455440  T
Q  120 tcaagagatatccataatatttagaaaattggaaattgtgtttcttatgagagaaagataaagtgcgcnnnnnnntcgaaatttcttggagaaagatagt 219  Q
    ||||||| ||| || |||||||||||||||| ||||   |||| |||||||| |||||||||| ||||       |  |||||| ||||||||||| |||    
T  9455441 tcaagagctatgcacaatatttagaaaattgaaaat--agtttgttatgagaaaaagataaagcgcgcaaaaaaataaaaatttgttggagaaagagagt 9455538  T
Q  220 agtaactaacaattctttgttacatattaaatttattggaaagataaagtgtgtg 274  Q
    |||||||||||||| ||||||||||||||||||||||||||| ||||| ||||||    
T  9455539 agtaactaacaattgtttgttacatattaaatttattggaaaaataaaatgtgtg 9455593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 63 - 274
Target Start/End: Complemental strand, 2742862 - 2742651
Alignment:
Q  63 tagttccatgaagagttaaaattctataaataacatgagta--gtacttgttaaaaatttcaagagatatccataatatttagaaaattggaaattgtgt 160  Q
    ||||||||||||||||| | |||||||||||||||||||||  ||||||||||||||||||||||||||| ||||||||||| ||||||| ||||  |||    
T  2742862 tagttccatgaagagtttatattctataaataacatgagtatagtacttgttaaaaatttcaagagatatgcataatatttataaaattgaaaat--tgt 2742765  T
Q  161 ttcttatgagagaaagataaagtgcgcnnnnnnntcgaaatttcttggagaaagatagtagtaactaacaattctttgttacatattaaatttattggaa 260  Q
    || ||||||||||||||||||   |||       | ||||||| || |||||||| | || |||||||||||| ||||||||||||||||||||||||||    
T  2742764 ttgttatgagagaaagataaaacacgccaaaaaatagaaatttattagagaaagagactactaactaacaattgtttgttacatattaaatttattggaa 2742665  T
Q  261 agataaagtgtgtg 274  Q
    ||||||| ||||||    
T  2742664 agataaaatgtgtg 2742651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 47 - 182
Target Start/End: Complemental strand, 7578133 - 7578000
Alignment:
Q  47 ttgttacctatgataatagttccatgaagagttaaaattctataaataacatgagtagtacttgttaaaaatttcaagagatatccataatatttagaaa 146  Q
    ||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||    
T  7578133 ttgttacctatgataatagttccattaagagttaaaatactataaataacatgagtagtacttgttaaaaatttcaagagatatgcacaatatttagaaa 7578034  T
Q  147 attggaaattgtgtttcttatgagagaaagataaag 182  Q
    |||  ||||  ||||| ||| |||||||||||||||    
T  7578033 attaaaaat--tgtttgttaagagagaaagataaag 7578000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 20 - 124
Target Start/End: Complemental strand, 1358871 - 1358767
Alignment:
Q  20 ttgttatctttaaatttaaacaaaattttgttacctatgataatagttccatgaagagttaaaattctataaataacatgagtagtacttgttaaaaatt 119  Q
    |||||||||| ||||||||||||||||||||||||||| ||||| |||||||||| |||||||||||||| ||||| |||||| ||| |||||||||| |    
T  1358871 ttgttatcttaaaatttaaacaaaattttgttacctataataatggttccatgaatagttaaaattctatgaataagatgagtggtaattgttaaaaaat 1358772  T
Q  120 tcaag 124  Q
    |||||    
T  1358771 tcaag 1358767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 20 - 124
Target Start/End: Original strand, 34038997 - 34039098
Alignment:
Q  20 ttgttatctttaaatttaaacaaaattttgttacctatgataatagttccatgaagagttaaaattctataaataacatgagtagtacttgttaaaaatt 119  Q
    |||||||||| ||||||||| ||||||||||||||||| |||||  ||||||||| |||||||||||||||||||| | ||||||   ||||||||||||    
T  34038997 ttgttatcttaaaatttaaataaaattttgttacctataataatgattccatgaatagttaaaattctataaataagacgagtag---ttgttaaaaatt 34039093  T
Q  120 tcaag 124  Q
    |||||    
T  34039094 tcaag 34039098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 22 - 117
Target Start/End: Complemental strand, 16599318 - 16599223
Alignment:
Q  22 gttatctttaaatttaaacaaaattttgttacctatgataatagttccatgaagagttaaaattctataaataacatgagtagtacttgttaaaaa 117  Q
    |||||||| ||||||||| ||||||||||||||||| |||||  ||||||||| |||||||||| |||| |||| |||||||||| ||||||||||    
T  16599318 gttatcttcaaatttaaataaaattttgttacctatcataatgattccatgaaaagttaaaattttatacataagatgagtagtaattgttaaaaa 16599223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 19 - 117
Target Start/End: Complemental strand, 43026640 - 43026542
Alignment:
Q  19 tttgttatctttaaatttaaacaaaattttgttacctatgataatagttccatgaagagttaaaattctataaataacatgagtagtacttgttaaaaa 117  Q
    |||||||| || || |||||||||||||||||||| ||| | ||| ||| ||||||||||||||||||||||||||| |  ||||||| ||||||||||    
T  43026640 tttgttatgttcaagtttaaacaaaattttgttacttataagaatggtttcatgaagagttaaaattctataaataagaaaagtagtaattgttaaaaa 43026542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 37 - 124
Target Start/End: Original strand, 35318835 - 35318921
Alignment:
Q  37 aaacaaaattttgttacctatgataatagttccatgaagagttaaaattctataaataacatgagtagtacttgttaaaaatttcaag 124  Q
    ||||||||||||||||||| | ||||| |||||||||||||||||||||| |||||||| || ||||  | |||||||||||||||||    
T  35318835 aaacaaaattttgttacctttaataatggttccatgaagagttaaaattccataaataagatcagtaaca-ttgttaaaaatttcaag 35318921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 19 - 124
Target Start/End: Original strand, 16393810 - 16393912
Alignment:
Q  19 tttgttatctttaaatttaaacaaaattttgttacctatgataatagttccatgaagagttaaaattctataaataacatgagtagtacttgttaaaaat 118  Q
    ||||||||||| ||||||||||||||||||||| || |  | ||||||||||  ||||||||||||||||||||||| | |||||| | | |||||||||    
T  16393810 tttgttatcttcaaatttaaacaaaattttgtt-ccaa--acaatagttccaaaaagagttaaaattctataaataagaagagtagcaatcgttaaaaat 16393906  T
Q  119 ttcaag 124  Q
    ||||||    
T  16393907 ttcaag 16393912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 340 - 390
Target Start/End: Complemental strand, 7577872 - 7577822
Alignment:
Q  340 cactttgctatttttatgttaaaattctaaaacgatgcttaaaaaggaacg 390  Q
    ||||| ||||||||||||||||||||||||||||| |||||||||||||||    
T  7577872 cacttagctatttttatgttaaaattctaaaacgacgcttaaaaaggaacg 7577822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 20 - 124
Target Start/End: Complemental strand, 7695249 - 7695148
Alignment:
Q  20 ttgttatctttaaatttaaacaaaattttgttacctatgataatagttccatgaagagttaaaattctataaataacatgagtagtacttgttaaaaatt 119  Q
    |||||||||| |||||||||||||||||||||||  |    ||| ||||||  ||||||||||||||||||||||| |||||||  | || |||||||||    
T  7695249 ttgttatcttcaaatttaaacaaaattttgttacaaac---aatggttccaaaaagagttaaaattctataaataagatgagtaacaatttttaaaaatt 7695153  T
Q  120 tcaag 124  Q
    |||||    
T  7695152 tcaag 7695148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 23 - 120
Target Start/End: Original strand, 25496759 - 25496853
Alignment:
Q  23 ttatctttaaatttaaacaaaattttgttacctatgataatagttccatgaagagttaaaattctataaataacatgagtagtacttgttaaaaattt 120  Q
    ||||||||||||||||||||||||||||||  ||  | ||| ||| || |||||||| ||||||||||||||| |||||||| | |||||||||||||    
T  25496759 ttatctttaaatttaaacaaaattttgtta--taa-acaatggtttcaagaagagtttaaattctataaataagatgagtagcagttgttaaaaattt 25496853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 20 - 100
Target Start/End: Original strand, 3741763 - 3741843
Alignment:
Q  20 ttgttatctttaaatttaaacaaaattttgttacctatgataatagttccatgaagagttaaaattctataaataacatga 100  Q
    |||||||||| | ||||||| ||||||||||||| ||| |||||  ||  |||||||||||||||||||||||||| ||||    
T  3741763 ttgttatcttcatatttaaagaaaattttgttacatataataatgattttatgaagagttaaaattctataaataagatga 3741843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 65 - 124
Target Start/End: Original strand, 5870924 - 5870983
Alignment:
Q  65 gttccatgaagagttaaaattctataaataacatgagtagtacttgttaaaaatttcaag 124  Q
    |||||| |||||||||||||||||||||||| |||||||  | |||||||||||||||||    
T  5870924 gttccaagaagagttaaaattctataaataagatgagtaacaattgttaaaaatttcaag 5870983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 20 - 95
Target Start/End: Complemental strand, 29315849 - 29315774
Alignment:
Q  20 ttgttatctttaaatttaaacaaaattttgttacctatgataatagttccatgaagagttaaaattctataaataa 95  Q
    |||||||||  | ||||||||||||||||||||| ||| |||||  ||  ||||||||||||||||||||||||||    
T  29315849 ttgttatctacagatttaaacaaaattttgttacatataataatcattttatgaagagttaaaattctataaataa 29315774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 23 - 124
Target Start/End: Original strand, 11087241 - 11087339
Alignment:
Q  23 ttatctttaaatttaaacaaaattttgttacctatgataatagttccatgaagagttaaaattctataaataacatgagtagtacttgttaaaaatttca 122  Q
    ||||||| ||||||||||||||||||||||  ||  |||  ||||  | |||||||||||||||||||||||| || ||||  | |||||||||||||||    
T  11087241 ttatcttcaaatttaaacaaaattttgtta--taa-atatcagttttaagaagagttaaaattctataaataagataagtaacaattgttaaaaatttca 11087337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 23 - 120
Target Start/End: Original strand, 25400580 - 25400673
Alignment:
Q  23 ttatctttaaatttaaacaaaattttgttacctatgataatagttccatgaagagttaaaattctataaataacatgagtagtacttgttaaaaattt 120  Q
    ||||||||||||||||||||| ||||||||  ||  | ||| ||| || |||||||| ||||||||||||||| |||||||| | |||||||||||||    
T  25400580 ttatctttaaatttaaacaaa-ttttgtta--taa-acaatggtttcaagaagagtttaaattctataaataagatgagtagcagttgttaaaaattt 25400673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 340 - 385
Target Start/End: Complemental strand, 3443363 - 3443318
Alignment:
Q  340 cactttgctatttttatgttaaaattctaaaacgatgcttaaaaag 385  Q
    ||||| ||||||||| ||||||||||||||||||| ||||||||||    
T  3443363 cacttcgctatttttgtgttaaaattctaaaacgacgcttaaaaag 3443318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 66 - 123
Target Start/End: Original strand, 34146355 - 34146412
Alignment:
Q  66 ttccatgaagagttaaaattctataaataacatgagtagtacttgttaaaaatttcaa 123  Q
    ||||| ||||| |||||||||||||||||| |||||||  | ||||||||||||||||    
T  34146355 ttccaagaagatttaaaattctataaataagatgagtaacaattgttaaaaatttcaa 34146412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 340 - 396
Target Start/End: Original strand, 9455659 - 9455715
Alignment:
Q  340 cactttgctatttttatgttaaaattctaaaacgatgcttaaaaaggaacggaggga 396  Q
    ||||||||||||||| |||||||||| ||||| ||  ||||||||| ||||||||||    
T  9455659 cactttgctatttttgtgttaaaattttaaaatgacacttaaaaagaaacggaggga 9455715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 34 - 124
Target Start/End: Original strand, 36682665 - 36682751
Alignment:
Q  34 tttaaacaaaattttgttacctatgataatagttccatgaagagttaaaattctataaataacatgagtagtacttgttaaaaatttcaag 124  Q
    |||||||||||||||||||| ||| |||||  ||  |||||||||||||||| ||||||||| |||   | || |||||||||||||||||    
T  36682665 tttaaacaaaattttgttacatat-ataatgattttatgaagagttaaaattttataaataagatg---aataattgttaaaaatttcaag 36682751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 243 - 274
Target Start/End: Complemental strand, 1256378 - 1256347
Alignment:
Q  243 atattaaatttattggaaagataaagtgtgtg 274  Q
    ||||||||||||||||||||||||||||||||    
T  1256378 atattaaatttattggaaagataaagtgtgtg 1256347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 351 - 402
Target Start/End: Complemental strand, 2742583 - 2742532
Alignment:
Q  351 ttttatgttaaaattctaaaacgatgcttaaaaaggaacggagggagtatta 402  Q
    |||| |||||||||||||||||||  ||| |||| |||||||||||||||||    
T  2742583 ttttgtgttaaaattctaaaacgactcttcaaaaagaacggagggagtatta 2742532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 241 - 272
Target Start/End: Original strand, 3742211 - 3742242
Alignment:
Q  241 acatattaaatttattggaaagataaagtgtg 272  Q
    ||||||||||||||||||||||||||||||||    
T  3742211 acatattaaatttattggaaagataaagtgtg 3742242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 100
Target Start/End: Complemental strand, 30887837 - 30887759
Alignment:
Q  19 tttgttatctttaaatttaaacaaaattttgttacctatgataatagttccatgaagagttaaaattctataaataacatga 100  Q
    |||||||||||||||||||||||||||||| ||   |   | ||| |||| | |||||||||||||||||||||||| ||||    
T  30887837 tttgttatctttaaatttaaacaaaattttatt---tcaaacaatggttctaagaagagttaaaattctataaataagatga 30887759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 348 - 399
Target Start/End: Original strand, 34039464 - 34039515
Alignment:
Q  348 tatttttatgttaaaattctaaaacgatgcttaaaaaggaacggagggagta 399  Q
    ||||||| |||||||||||||||||||   ||||||||||| ||||||||||    
T  34039464 tatttttgtgttaaaattctaaaacgacatttaaaaaggaaaggagggagta 34039515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 33 - 67
Target Start/End: Original strand, 14896763 - 14896797
Alignment:
Q  33 atttaaacaaaattttgttacctatgataatagtt 67  Q
    ||||||||||||||||||||||||| |||||||||    
T  14896763 atttaaacaaaattttgttacctataataatagtt 14896797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 340 - 402
Target Start/End: Complemental strand, 35970121 - 35970059
Alignment:
Q  340 cactttgctatttttatgttaaaattctaaaacgatgcttaaaaaggaacggagggagtatta 402  Q
    |||||||||| |||  |||||| |||||||||||||  ||||||||||||||| | |||||||    
T  35970121 cactttgctaatttggtgttaatattctaaaacgatagttaaaaaggaacggatgaagtatta 35970059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 241 - 274
Target Start/End: Complemental strand, 7695038 - 7695005
Alignment:
Q  241 acatattaaatttattggaaagataaagtgtgtg 274  Q
    ||||||||||||||||| ||||||||||||||||    
T  7695038 acatattaaatttattgaaaagataaagtgtgtg 7695005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 366 - 399
Target Start/End: Complemental strand, 34038852 - 34038819
Alignment:
Q  366 ctaaaacgatgcttaaaaaggaacggagggagta 399  Q
    |||||||||| |||||||||||||||||||||||    
T  34038852 ctaaaacgatacttaaaaaggaacggagggagta 34038819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 241 - 274
Target Start/End: Original strand, 34146747 - 34146780
Alignment:
Q  241 acatattaaatttattggaaagataaagtgtgtg 274  Q
    ||||||||||||||||||||||||||| ||||||    
T  34146747 acatattaaatttattggaaagataaaatgtgtg 34146780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 241 - 274
Target Start/End: Original strand, 38402014 - 38402047
Alignment:
Q  241 acatattaaatttattggaaagataaagtgtgtg 274  Q
    ||||||||| ||||||||||||||||||||||||    
T  38402014 acatattaagtttattggaaagataaagtgtgtg 38402047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 79 - 123
Target Start/End: Complemental strand, 1256615 - 1256571
Alignment:
Q  79 taaaattctataaataacatgagtagtacttgttaaaaatttcaa 123  Q
    ||||||||||||||||| |||||||  | ||||||||||||||||    
T  1256615 taaaattctataaataaaatgagtatcatttgttaaaaatttcaa 1256571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 120; Significance: 3e-61; HSPs: 3)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 20 - 246
Target Start/End: Complemental strand, 46562 - 46337
Alignment:
Q  20 ttgttatctttaaatttaaacaaaattttgttacctatgataatagttccatgaagagttaaaattctataaataacatgagtagtacttgttaaaa-at 118  Q
    |||| ||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||  |    
T  46562 ttgtcatcttcaaatttaaacaaaattttgttatctatgataatagttccatgaagagttaaaattctataaataacatgagtagcacttgttaaaattt 46463  T
Q  119 ttcaagagatatccataatatttagaaaattggaaattgtgtttcttatgagagaaagataaagtgcgcnnnnnnntcgaaatttcttggagaaagatag 218  Q
    |||||||||||| ||||||||||||||||||| ||||  ||||| |||||| |||||||||||| |||        | | ||||| ||||||||||| ||    
T  46462 ttcaagagatatgcataatatttagaaaattgaaaat--tgtttgttatgaaagaaagataaagcgcgtaaaaatataggaatttgttggagaaagagag 46365  T
Q  219 tagtaactaacaattctttgttacatat 246  Q
    |||||||||| |||| ||||||||||||    
T  46364 tagtaactaaaaattgtttgttacatat 46337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 83 - 274
Target Start/End: Complemental strand, 46217 - 46027
Alignment:
Q  83 attctataaataacatgagtagtacttgttaaaaa-tttcaagagatatccataatatttagaaaattggaaattgtgtttcttatgagagaaagataaa 181  Q
    |||||||||||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||||| ||||  ||||| ||||||||||||||||||    
T  46217 attctataaataacattagtagtacttgttaaaaaatttcaagagatatgcataatatttagaaaattgaaaat--tgtttgttatgagagaaagataaa 46120  T
Q  182 gtgcgcnnnnnnntcgaaatttcttggagaaagatagtagtaactaacaattctttgttacatattaaatttattggaaagataaagtgtgtg 274  Q
    | |||        | | ||||| ||||||||||| |||||| ||||| |||| ||||||||||||||||||||||||||||||||| ||||||    
T  46119 gcgcgtaaaaatataggaatttgttggagaaagagagtagtcactaaaaattgtttgttacatattaaatttattggaaagataaaatgtgtg 46027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 348 - 400
Target Start/End: Complemental strand, 45953 - 45901
Alignment:
Q  348 tatttttatgttaaaattctaaaacgatgcttaaaaaggaacggagggagtat 400  Q
    ||||||| |||||||||||||||||||  |||||||||||| |||||| ||||    
T  45953 tatttttttgttaaaattctaaaacgacacttaaaaaggaaaggagggtgtat 45901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 115; Significance: 3e-58; HSPs: 33)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 64 - 274
Target Start/End: Original strand, 17558120 - 17558328
Alignment:
Q  64 agttccatgaagagttaaaattctataaataacatgagtagtacttgttaaaaatttcaagagatatccataatatttagaaaattggaaattgtgtttc 163  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||| ||||  |||||     
T  17558120 agttccatgaagagttaaaattctataaataacatgagtagtacatgttaaaaatttcaagagatatgcataatatttagaaaattgaaaat--tgtttg 17558217  T
Q  164 ttatgagagaaagataaagtgcgcnnnnnnntcgaaatttcttggagaaagatagtagtaactaacaattctttgttacatattaaatttattggaaaga 263  Q
    || ||| |||||||||||| ||||       | | ||||| ||||||||||| ||||||||||||||||| ||||||| ||||| | ||||||||||| |    
T  17558218 ttttgaaagaaagataaagcgcgcaaaaaaataggaatttgttggagaaagagagtagtaactaacaattgtttgttaaatatttagtttattggaaata 17558317  T
Q  264 taaagtgtgtg 274  Q
    |||||||||||    
T  17558318 taaagtgtgtg 17558328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 20 - 272
Target Start/End: Original strand, 16365838 - 16366074
Alignment:
Q  20 ttgttatctttaaatttaaacaaaattttgttacctatgataatagttccatgaagagttaaaattctataaataacatgagtagtacttgttaaaaatt 119  Q
    |||||||||| |||||||||||||||||||||||||||     || ||||||||||||||||||||||||||||||||         |||||||||||||    
T  16365838 ttgttatcttcaaatttaaacaaaattttgttacctat-----taattccatgaagagttaaaattctataaataaca---------cttgttaaaaatt 16365923  T
Q  120 tcaagagatatccataatatttagaaaattggaaattgtgtttcttatgagagaaagataaagtgcgcnnnnnnn-tcgaaatttcttggagaaagatag 218  Q
    ||||||||||| || ||||||||||||||||||||||||  || |||||||||||||||||| ||| |        | | ||||||||||||||||| ||    
T  16365924 tcaagagatatgcacaatatttagaaaattggaaattgt--ttgttatgagagaaagataaa-tgcacaaaaaaaattggaatttcttggagaaagagag 16366020  T
Q  219 tagtaactaacaattctttgttacatattaaatttattggaaagataaagtgtg 272  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  16366021 tagtaactaacaattgtttgttacatattaaatttattggaaagataaagtgtg 16366074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 20 - 272
Target Start/End: Complemental strand, 32717961 - 32717715
Alignment:
Q  20 ttgttatctttaaatttaaacaaaattttgttacctatgataatagttccatgaagagttaaaattctataaataacatgagtagtacttgttaaaaatt 119  Q
    |||||||||| ||||||||||||||||||||||||||||||| |||||    ||||||||||||||||||||||||||| ||||||||||||||||||||    
T  32717961 ttgttatcttcaaatttaaacaaaattttgttacctatgatagtagtt----gaagagttaaaattctataaataacataagtagtacttgttaaaaatt 32717866  T
Q  120 tcaagagatatccataatatttagaaaattggaaattgtgtttcttatgagagaaagataaagtgcgcnnnnnnntcgaaatttcttggagaaagatagt 219  Q
    ||||||||||| || |||||||||||||| | ||||| ||||| |||||||||||  || ||| ||||       | | ||||| || |||||||| |||    
T  32717865 tcaagagatatgcacaatatttagaaaatcgaaaatt-tgtttgttatgagagaataattaagcgcgcaaaaaaataggaatttgtt-gagaaagagagt 32717768  T
Q  220 agtaactaacaattctttgttacatattaaatttattggaaagataaagtgtg 272  Q
    |||||||||||||| || ||||||||| ||||||||  |||| ||||||||||    
T  32717767 agtaactaacaattgttagttacatatcaaatttatcagaaaaataaagtgtg 32717715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 75 - 274
Target Start/End: Original strand, 14655144 - 14655335
Alignment:
Q  75 gagttaaaattctataaataacatgagtagtacttgttaaaaatttcaagagatatccataatatttagaaaattggaaattgtgtttcttatgagagaa 174  Q
    |||||||||||||||||||||||||||||||||||  ||||||||||||||||||| || |||||||||||||||| ||||  ||||| |||||||||||    
T  14655144 gagttaaaattctataaataacatgagtagtacttaataaaaatttcaagagatatgcacaatatttagaaaattgaaaat--tgtttgttatgagagaa 14655241  T
Q  175 agataaagtgcgcnnnnnnntcgaaatttcttggagaaagatagtagtaactaacaattctttgttacatattaaatttattggaaagataaagtgtgtg 274  Q
    |||| ||||||||       | | || || ||||||| ||     |||||||||||||| |||||||||||||||| |||||||||||||||||||||||    
T  14655242 agattaagtgcgcaaaaaaataggaagttgttggagagag-----agtaactaacaattgtttgttacatattaaa-ttattggaaagataaagtgtgtg 14655335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 20 - 124
Target Start/End: Complemental strand, 19133444 - 19133341
Alignment:
Q  20 ttgttatctttaaatttaaacaaaattttgttacctatgataatagttccatgaagagttaaaattctataaataacatgagtagtacttgttaaaaatt 119  Q
    ||||| |||| ||||||||||||  |||| |||||||| |||||||||| |||||||||||||||||||||||||| |||||||||| ||||||||||||    
T  19133444 ttgttgtcttcaaatttaaacaatttttt-ttacctataataatagttcaatgaagagttaaaattctataaataagatgagtagtaattgttaaaaatt 19133346  T
Q  120 tcaag 124  Q
    |||||    
T  19133345 tcaag 19133341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 197 - 274
Target Start/End: Original strand, 20202117 - 20202194
Alignment:
Q  197 gaaatttcttggagaaagatagtagtaactaacaattctttgttacatattaaatttattggaaagataaagtgtgtg 274  Q
    ||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||    
T  20202117 gaaatttgttggagaaagagagtagtaactaacaattgtttgttacatattaaatttattgaaaagataaagtgtgtg 20202194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 122 - 274
Target Start/End: Complemental strand, 36059812 - 36059662
Alignment:
Q  122 aagagatatccataatatttagaaaattggaaattgtgtttcttatgagagaaagataaagtgcgcnnnnnnntcgaaatttcttggagaaagatagtag 221  Q
    |||||||||  | ||||||||||||| |  |||||||  ||| ||||||||||||||||||  |||       | | ||||| ||||||||||  |||||    
T  36059812 aagagatatgtacaatatttagaaaactaaaaattgt--ttcctatgagagaaagataaagcacgcaaaaaaataggaatttgttggagaaagtgagtag 36059715  T
Q  222 taactaacaattctttgttacatattaaatttattggaaagataaagtgtgtg 274  Q
    |||||||||||| ||| ||||||||||||||||||||||||||||||||||||    
T  36059714 taactaacaattgtttcttacatattaaatttattggaaagataaagtgtgtg 36059662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 20 - 124
Target Start/End: Original strand, 19931940 - 19932042
Alignment:
Q  20 ttgttatctttaaatttaaacaaaattttgttacctatgataatagttccatgaagagttaaaattctataaataacatgagtagtacttgttaaaaatt 119  Q
    |||||||||| ||||||| ||||  |||| |||||||| ||||| |||| |||||||||||||| ||||||||||| ||||| |||| ||||||||||||    
T  19931940 ttgttatcttcaaatttagacaa--tttttttacctataataatggttcaatgaagagttaaaactctataaataagatgagcagtaattgttaaaaatt 19932037  T
Q  120 tcaag 124  Q
    |||||    
T  19932038 tcaag 19932042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 23 - 120
Target Start/End: Original strand, 39614946 - 39615043
Alignment:
Q  23 ttatctttaaatttaaacaaaattttgttacctatgataatagttccatgaagagttaaaattctataaataacatgagtagtacttgttaaaaattt 120  Q
    ||||||| |||||||||||||||| |||||||||| || || |||| ||| |||||||||||||||||||||| || | ||||| |||||||||||||    
T  39614946 ttatcttcaaatttaaacaaaattgtgttacctataatgatggttctatggagagttaaaattctataaataagataaatagtaattgttaaaaattt 39615043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 20 - 150
Target Start/End: Original strand, 6428342 - 6428468
Alignment:
Q  20 ttgttatctttaaatttaaacaaaattttgttacctatgataatagttccatgaagagttaaaattctataaataacatgagtagtacttgttaaaaatt 119  Q
    ||||||||||||||||| ||||||||||||||||  |    ||| |||| | |||||||||||||||||||||||| |||||||||| |||||||||| |    
T  6428342 ttgttatctttaaattttaacaaaattttgttacaaac---aatggttcaa-gaagagttaaaattctataaataaaatgagtagtaattgttaaaaaat 6428437  T
Q  120 tcaagagatatccataatatttagaaaattg 150  Q
    | || |||||| || | ||||||||||||||    
T  6428438 taaaaagatatgcacattatttagaaaattg 6428468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 20 - 124
Target Start/End: Original strand, 19922241 - 19922344
Alignment:
Q  20 ttgttatctttaaatttaaacaaaattttgttacctatgataatagttccatgaagagttaaaattctataaataacatgagtagtacttgttaaaaatt 119  Q
    |||||||||| ||||||||||||  |||| ||| |||| ||||| |||| |||||||||||||| ||||||||||| ||||  |||| ||||||||||||    
T  19922241 ttgttatcttcaaatttaaacaatttttt-ttatctataataatggttcaatgaagagttaaaactctataaataagatgatcagtaattgttaaaaatt 19922339  T
Q  120 tcaag 124  Q
    |||||    
T  19922340 tcaag 19922344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 20 - 124
Target Start/End: Complemental strand, 18413349 - 18413248
Alignment:
Q  20 ttgttatctttaaatttaaacaaaattttgttacctatgataatagttccatgaagagttaaaattctataaataacatgagtagtacttgttaaaaatt 119  Q
    |||||||||| |||||||||||||||||||||||  |||||    ||| || |||||||||||||||||||||||| |||| ||| | |||||||||| |    
T  18413349 ttgttatcttcaaatttaaacaaaattttgttacaaatgatg---gtttcaagaagagttaaaattctataaataagatgaatagaaattgttaaaaaat 18413253  T
Q  120 tcaag 124  Q
    |||||    
T  18413252 tcaag 18413248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 23 - 124
Target Start/End: Complemental strand, 36437326 - 36437228
Alignment:
Q  23 ttatctttaaatttaaacaaaattttgttacctatgataatagttccatgaagagttaaaattctataaataacatgagtagtacttgttaaaaatttca 122  Q
    ||||||| ||||||||||||||||||||||  || || ||| |||| | |||||||||||||||||||||||| |||||||| | ||||||||||| |||    
T  36437326 ttatcttcaaatttaaacaaaattttgtta--ta-gacaatggttctaagaagagttaaaattctataaataagatgagtagcaattgttaaaaatctca 36437230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 31 - 95
Target Start/End: Original strand, 14967651 - 14967715
Alignment:
Q  31 aaatttaaacaaaattttgttacctatgataatagttccatgaagagttaaaattctataaataa 95  Q
    ||||||||||||||||||||||||||| |||||  ||||||||| |||| |||||||||||||||    
T  14967651 aaatttaaacaaaattttgttacctataataatgcttccatgaaaagtttaaattctataaataa 14967715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 20 - 124
Target Start/End: Complemental strand, 8544718 - 8544617
Alignment:
Q  20 ttgttatctttaaatttaaacaaaattttgttacctatgataatagttccatgaagagttaaaattctataaataacatgagtagtacttgttaaaaatt 119  Q
    |||||||||| ||||| |||||||||||||||||  |    ||| ||| || |||||||||||||||||||||||| |||||||| |  |||||||||||    
T  8544718 ttgttatcttcaaattcaaacaaaattttgttacaaac---aatggtttcaagaagagttaaaattctataaataagatgagtagcaactgttaaaaatt 8544622  T
Q  120 tcaag 124  Q
    |||||    
T  8544621 tcaag 8544617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 20 - 116
Target Start/End: Original strand, 17201344 - 17201437
Alignment:
Q  20 ttgttatctttaaatttaaacaaaattttgttacctatgataatagttccatgaagagttaaaattctataaataacatgagtagtacttgttaaaa 116  Q
    |||||||||| |||||||||||||||||||||||  |  || ||   |||| |||||||||||||||||||||||| ||||||| || |||||||||    
T  17201344 ttgttatcttcaaatttaaacaaaattttgttacaaacaatgat---tccaagaagagttaaaattctataaataagatgagtaataattgttaaaa 17201437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 340 - 401
Target Start/End: Original strand, 20202261 - 20202322
Alignment:
Q  340 cactttgctatttttatgttaaaattctaaaacgatgcttaaaaaggaacggagggagtatt 401  Q
    ||||| ||||||||| |||||||||| ||||||||  |||||||||||||||||||||||||    
T  20202261 cacttagctatttttgtgttaaaattttaaaacgacacttaaaaaggaacggagggagtatt 20202322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 20 - 124
Target Start/End: Original strand, 19924991 - 19925094
Alignment:
Q  20 ttgttatctttaaatttaaacaaaattttgttacctatgataatagttccatgaagagttaaaattctataaataacatgagtagtacttgttaaaaatt 119  Q
    |||||||||| ||||||||||||  |||| |||  ||| ||||| |||| |||||||||||||| ||||| ||||| ||||  |||| ||||||||||||    
T  19924991 ttgttatcttcaaatttaaacaatttttt-ttatttataataatggttcaatgaagagttaaaactctatgaataagatgatcagtaattgttaaaaatt 19925089  T
Q  120 tcaag 124  Q
    |||||    
T  19925090 tcaag 19925094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 33 - 124
Target Start/End: Complemental strand, 249490 - 249402
Alignment:
Q  33 atttaaacaaaattttgttacctatgataatagttccatgaagagttaaaattctataaataacatgagtagtacttgttaaaaatttcaag 124  Q
    ||||||||||||||||||||| ||| |||||  ||  |||||||||||||||| ||||||||| |||   | || |||||||||||||||||    
T  249490 atttaaacaaaattttgttacatataataatgattttatgaagagttaaaattttataaataagatg---aataattgttaaaaatttcaag 249402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 19 - 95
Target Start/End: Original strand, 10704527 - 10704603
Alignment:
Q  19 tttgttatctttaaatttaaacaaaattttgttacctatgataatagttccatgaagagttaaaattctataaataa 95  Q
    ||||||| ||| ||| ||||||||||||||||||| ||| ||||||||| ||| |||| || ||||| |||||||||    
T  10704527 tttgttaacttcaaagttaaacaaaattttgttacatataataatagtttcatcaagacttgaaattttataaataa 10704603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 19 - 124
Target Start/End: Original strand, 1583563 - 1583664
Alignment:
Q  19 tttgttatctttaaatttaaacaaaattttgttacctatgataatagttccatgaagagttaaaattctataaataacatgagtagtacttgttaaaaat 118  Q
    ||||||||||| ||| |||||||||||||||||||  |    ||| |||| | ||||||||||||||||||||  || |||||||| | |||||||||||    
T  1583563 tttgttatcttcaaacttaaacaaaattttgttacaaac---aatggttcaa-gaagagttaaaattctataataaagatgagtagcaattgttaaaaat 1583658  T
Q  119 ttcaag 124  Q
    ||||||    
T  1583659 ttcaag 1583664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 340 - 399
Target Start/End: Original strand, 17558394 - 17558453
Alignment:
Q  340 cactttgctatttttatgttaaaattctaaaacgatgcttaaaaaggaacggagggagta 399  Q
    ||||| ||||||||| |||||||||||||||||||  ||||||||  |||||||||||||    
T  17558394 cacttcgctatttttgtgttaaaattctaaaacgacacttaaaaaaaaacggagggagta 17558453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 20 - 63
Target Start/End: Original strand, 20201767 - 20201810
Alignment:
Q  20 ttgttatctttaaatttaaacaaaattttgttacctatgataat 63  Q
    |||||||||| |||||||||||||||||||||||||| ||||||    
T  20201767 ttgttatcttcaaatttaaacaaaattttgttacctaagataat 20201810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 340 - 395
Target Start/End: Complemental strand, 32717648 - 32717593
Alignment:
Q  340 cactttgctatttttatgttaaaattctaaaacgatgcttaaaaaggaacggaggg 395  Q
    ||||| ||||||||| |||||||||||||||||||  ||||||||||||| |||||    
T  32717648 cacttcgctatttttgtgttaaaattctaaaacgacacttaaaaaggaacagaggg 32717593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 20 - 91
Target Start/End: Complemental strand, 43346655 - 43346584
Alignment:
Q  20 ttgttatctttaaatttaaacaaaattttgttacctatgataatagttccatgaagagttaaaattctataa 91  Q
    |||||||||  ||||||||||||||||||||||| ||| |||||  ||  |||||||||||||||| |||||    
T  43346655 ttgttatctacaaatttaaacaaaattttgttacatataataatgattttatgaagagttaaaattatataa 43346584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 20 - 124
Target Start/End: Complemental strand, 42674060 - 42673959
Alignment:
Q  20 ttgttatctttaaatttaaacaaaattttgttacctatgataatagttccatgaagagttaaaa-ttctataaataacatgagtagtacttgttaaaaat 118  Q
    |||||||||| ||||||||| |||||||||||||  | || ||| |||||| |||||||||||| |||||||||||| |||| ||  | |||||||||||    
T  42674060 ttgttatcttcaaatttaaataaaattttgttac--aaga-aat-gttccaagaagagttaaaaattctataaataagatgaataacaattgttaaaaat 42673965  T
Q  119 ttcaag 124  Q
    ||||||    
T  42673964 ttcaag 42673959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 241 - 274
Target Start/End: Original strand, 6428561 - 6428594
Alignment:
Q  241 acatattaaatttattggaaagataaagtgtgtg 274  Q
    ||||||||||||||||||||||||||||||||||    
T  6428561 acatattaaatttattggaaagataaagtgtgtg 6428594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 340 - 399
Target Start/End: Complemental strand, 248940 - 248881
Alignment:
Q  340 cactttgctatttttatgttaaaattctaaaacgatgcttaaaaaggaacggagggagta 399  Q
    ||||||||||||||||||  ||  |||||||||||  |||||||||||| ||||||||||    
T  248940 cactttgctatttttatggaaattttctaaaacgacacttaaaaaggaatggagggagta 248881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 244 - 274
Target Start/End: Original strand, 1584179 - 1584209
Alignment:
Q  244 tattaaatttattggaaagataaagtgtgtg 274  Q
    |||||||||||||||||||||||||||||||    
T  1584179 tattaaatttattggaaagataaagtgtgtg 1584209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 117
Target Start/End: Complemental strand, 11992172 - 11992078
Alignment:
Q  20 ttgttatctttaaatttaaacaaaattttgttacctatgataatagttccatgaagagttaaaattctataaataacatgagtagtacttgttaaaaa 117  Q
    |||||||||  |||||||||||||||||| || || |  | ||| |||||| ||||| |||||||||||||||||| |||||||| | ||||| ||||    
T  11992172 ttgttatctccaaatttaaacaaaattttctt-ccaa--aaaatggttccaagaagaattaaaattctataaataagatgagtagcaattgtttaaaa 11992078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 241 - 275
Target Start/End: Complemental strand, 17202022 - 17201988
Alignment:
Q  241 acatattaaatttattggaaagataaagtgtgtgt 275  Q
    ||||||||||||||||||||||||||||| |||||    
T  17202022 acatattaaatttattggaaagataaagtttgtgt 17201988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 241 - 271
Target Start/End: Original strand, 32474648 - 32474678
Alignment:
Q  241 acatattaaatttattggaaagataaagtgt 271  Q
    |||||||||||||||||||||||||||||||    
T  32474648 acatattaaatttattggaaagataaagtgt 32474678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 241 - 273
Target Start/End: Original strand, 19804236 - 19804268
Alignment:
Q  241 acatattaaatttattggaaagataaagtgtgt 273  Q
    ||||||||||||| |||||||||||||||||||    
T  19804236 acatattaaatttgttggaaagataaagtgtgt 19804268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 88; Significance: 4e-42; HSPs: 29)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 20 - 187
Target Start/End: Complemental strand, 788242 - 788071
Alignment:
Q  20 ttgttatctttaaatttaaacaaaattttgttacctatga------taatagttccatgaagagttaaaattctataaataacatgagtagtacttgtta 113  Q
    |||||||||| |||||||||||||||||||||||||||||      ||||||||||||||||||||||||||||| |||||||||||||||| |||||||    
T  788242 ttgttatcttcaaatttaaacaaaattttgttacctatgactatgataatagttccatgaagagttaaaattctacaaataacatgagtagtccttgtta 788143  T
Q  114 aaaatttcaagagatatccataatatttagaaaattggaaattgtgtttcttatgagagaaagataaagtgcgc 187  Q
    ||| |||||| |||||| || ||||| ||||||| |  ||||  ||||||||||||||||| ||||||| ||||    
T  788142 aaattttcaaaagatatgcacaatatctagaaaagtaaaaat--tgtttcttatgagagaaggataaagagcgc 788071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 20 - 124
Target Start/End: Complemental strand, 1674746 - 1674642
Alignment:
Q  20 ttgttatctttaaatttaaacaaaattttgttacctatgataatagttccatgaagagttaaaattctataaataacatgagtagtacttgttaaaaatt 119  Q
    |||||||||| ||||||||| |||||||||||| |||||||||| |||||||||| |||||||||||||||||||| ||||||| |||||||||||||||    
T  1674746 ttgttatcttcaaatttaaataaaattttgttatctatgataatggttccatgaaaagttaaaattctataaataagatgagtaatacttgttaaaaatt 1674647  T
Q  120 tcaag 124  Q
    |||||    
T  1674646 tcaag 1674642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 23 - 124
Target Start/End: Complemental strand, 31623079 - 31622978
Alignment:
Q  23 ttatctttaaatttaaacaaaattttgttacctatgataatagttccatgaagagttaaaattctataaataacatgagtagtacttgttaaaaatttca 122  Q
    ||||||||||||||||||||| |||||||| |||| |||||| |||||||||||||||||||| ||||||||| |||||| |||||||||||||||||||    
T  31623079 ttatctttaaatttaaacaaatttttgttaactataataataattccatgaagagttaaaattttataaataagatgagtggtacttgttaaaaatttca 31622980  T
Q  123 ag 124  Q
    ||    
T  31622979 ag 31622978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 20 - 124
Target Start/End: Complemental strand, 1394824 - 1394720
Alignment:
Q  20 ttgttatctttaaatttaaacaaaattttgttacctatgataatagttccatgaagagttaaaattctataaataacatgagtagtacttgttaaaaatt 119  Q
    |||||||||| |||||||||||||||||||||||||||  |||||||| |||||| |||||||||||||| ||||| ||| |||||| |||||||||| |    
T  1394824 ttgttatcttaaaatttaaacaaaattttgttacctatactaatagtttcatgaatagttaaaattctatgaataagatgggtagtaattgttaaaaaat 1394725  T
Q  120 tcaag 124  Q
    |||||    
T  1394724 tcaag 1394720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 24 - 95
Target Start/End: Complemental strand, 11238201 - 11238130
Alignment:
Q  24 tatctttaaatttaaacaaaattttgttacctatgataatagttccatgaagagttaaaattctataaataa 95  Q
    |||||| ||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  11238201 tatcttcaaatttaaacaaatttttgttacctatgataatagttccatgaagagtaaaaattctataaataa 11238130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 20 - 116
Target Start/End: Original strand, 19269841 - 19269937
Alignment:
Q  20 ttgttatctttaaatttaaacaaaattttgttacctatgataatagttccatgaagagttaaaattctataaataacatgagtagtacttgttaaaa 116  Q
    |||||||||| ||||| ||||||| |||| |||||||| ||||| ||| |||||| |||||||||||||||||||| |||||||||| |||||||||    
T  19269841 ttgttatcttcaaattgaaacaaattttttttacctataataatggtttcatgaatagttaaaattctataaataagatgagtagtaattgttaaaa 19269937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 199 - 274
Target Start/End: Complemental strand, 11237780 - 11237705
Alignment:
Q  199 aatttcttggagaaagatagtagtaactaacaattctttgttacatattaaatttattggaaagataaagtgtgtg 274  Q
    ||||| ||||||||||| ||||||||||||||||| || |||||||||||||||||||||||||||||| ||||||    
T  11237780 aatttgttggagaaagagagtagtaactaacaattgttcgttacatattaaatttattggaaagataaaatgtgtg 11237705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 210 - 274
Target Start/End: Complemental strand, 31622953 - 31622889
Alignment:
Q  210 gaaagatagtagtaactaacaattctttgttacatattaaatttattggaaagataaagtgtgtg 274  Q
    |||||||||||||||||||||||| || |||||||||||||||||||| ||||||||||||||||    
T  31622953 gaaagatagtagtaactaacaattgttggttacatattaaatttattgtaaagataaagtgtgtg 31622889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 197 - 274
Target Start/End: Complemental strand, 23697605 - 23697528
Alignment:
Q  197 gaaatttcttggagaaagatagtagtaactaacaattctttgttacatattaaatttattggaaagataaagtgtgtg 274  Q
    ||||||| ||||||||| | |||| || ||||||||| ||| ||||||||||||||||||||||||||||||||||||    
T  23697605 gaaatttgttggagaaatagagtaatagctaacaattgtttcttacatattaaatttattggaaagataaagtgtgtg 23697528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 22 - 124
Target Start/End: Complemental strand, 4396036 - 4395929
Alignment:
Q  22 gttatctttaaatttaaacaaaattttgttacctatgataatag-----ttccatgaagagttaaaattctataaataacatgagtagtacttgttaaaa 116  Q
    |||| ||| |||||||||||||| |||||||||||| ||||| |     || |||||| |||||||||||||||||||| |||| ||||| |||||||||    
T  4396036 gttagcttaaaatttaaacaaaactttgttacctataataatggtttcatttcatgaatagttaaaattctataaataagatgaatagtaattgttaaaa 4395937  T
Q  117 atttcaag 124  Q
    ||||||||    
T  4395936 atttcaag 4395929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 340 - 399
Target Start/End: Complemental strand, 1674297 - 1674238
Alignment:
Q  340 cactttgctatttttatgttaaaattctaaaacgatgcttaaaaaggaacggagggagta 399  Q
    ||||||| ||||||| |||||||||||||||||||  |||||||| ||||||||||||||    
T  1674297 cactttgttatttttgtgttaaaattctaaaacgacacttaaaaaagaacggagggagta 1674238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 199 - 273
Target Start/End: Complemental strand, 1674438 - 1674364
Alignment:
Q  199 aatttcttggagaaagatagtagtaactaacaattctttgttacatattaaatttattggaaagataaagtgtgt 273  Q
    ||||| ||| ||||||| |||||||||||||||   ||||||| ||||||||||||||| ||||||||| |||||    
T  1674438 aatttgttgaagaaagagagtagtaactaacaaccgtttgttagatattaaatttattgaaaagataaaatgtgt 1674364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 72 - 122
Target Start/End: Original strand, 41116669 - 41116719
Alignment:
Q  72 gaagagttaaaattctataaataacatgagtagtacttgttaaaaatttca 122  Q
    |||||||||||||||||||||||| |||||||| | |||||||||||||||    
T  41116669 gaagagttaaaattctataaataagatgagtagcatttgttaaaaatttca 41116719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 197 - 264
Target Start/End: Original strand, 2656147 - 2656212
Alignment:
Q  197 gaaatttcttggagaaagatagtagtaactaacaattctttgttacatattaaatttattggaaagat 264  Q
    ||||||| ||||| ||||| ||||||||||||||||| |||||  ||||||||||||||| |||||||    
T  2656147 gaaatttgttggaaaaagagagtagtaactaacaattgtttgt--catattaaatttatttgaaagat 2656212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 20 - 100
Target Start/End: Complemental strand, 23699385 - 23699305
Alignment:
Q  20 ttgttatctttaaatttaaacaaaattttgttacctatgataatagttccatgaagagttaaaattctataaataacatga 100  Q
    |||||||||| | ||||||||||||||||||||| | |  |||| |||  |||||||||||||||||||| ||||| ||||    
T  23699385 ttgttatcttcagatttaaacaaaattttgttacttgtattaatggttttatgaagagttaaaattctatgaataagatga 23699305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 241 - 274
Target Start/End: Original strand, 32769469 - 32769502
Alignment:
Q  241 acatattaaatttattggaaagataaagtgtgtg 274  Q
    ||||||||||||||||||||||||||||||||||    
T  32769469 acatattaaatttattggaaagataaagtgtgtg 32769502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 35 - 92
Target Start/End: Complemental strand, 33755661 - 33755604
Alignment:
Q  35 ttaaacaaaattttgttacctatgataatagttccatgaagagttaaaattctataaa 92  Q
    ||||| ||||||||||||||||| ||||||||| || |||||||| ||||| ||||||    
T  33755661 ttaaataaaattttgttacctataataatagtttcacgaagagttgaaattttataaa 33755604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 241 - 274
Target Start/End: Original strand, 41117464 - 41117497
Alignment:
Q  241 acatattaaatttattggaaagataaagtgtgtg 274  Q
    ||||||||||||||||||||||||||||||||||    
T  41117464 acatattaaatttattggaaagataaagtgtgtg 41117497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 347 - 399
Target Start/End: Complemental strand, 11237632 - 11237580
Alignment:
Q  347 ctatttttatgttaaaattctaaaacgatgcttaaaaaggaacggagggagta 399  Q
    |||||||| ||||| |||||||||||||  ||||||||| |||||||||||||    
T  11237632 ctatttttgtgttataattctaaaacgacacttaaaaagtaacggagggagta 11237580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 235 - 274
Target Start/End: Complemental strand, 786730 - 786691
Alignment:
Q  235 tttgttacatattaaatttattggaaagataaagtgtgtg 274  Q
    |||||||||||||||||||||| |||||||||| ||||||    
T  786730 tttgttacatattaaatttatttgaaagataaattgtgtg 786691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 241 - 274
Target Start/End: Complemental strand, 11795607 - 11795574
Alignment:
Q  241 acatattaaatttattggaaagataaagtgtgtg 274  Q
    ||||||||||||||||||||||| ||||||||||    
T  11795607 acatattaaatttattggaaagagaaagtgtgtg 11795574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 241 - 274
Target Start/End: Complemental strand, 13254291 - 13254258
Alignment:
Q  241 acatattaaatttattggaaagataaagtgtgtg 274  Q
    ||||||||||||||||||||||||| ||||||||    
T  13254291 acatattaaatttattggaaagatatagtgtgtg 13254258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 52
Target Start/End: Complemental strand, 23697691 - 23697658
Alignment:
Q  19 tttgttatctttaaatttaaacaaaattttgtta 52  Q
    ||||||||||| ||||||||||||||||||||||    
T  23697691 tttgttatcttcaaatttaaacaaaattttgtta 23697658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 241 - 274
Target Start/End: Complemental strand, 36319584 - 36319551
Alignment:
Q  241 acatattaaatttattggaaagataaagtgtgtg 274  Q
    |||||||||||||||||||||||||| |||||||    
T  36319584 acatattaaatttattggaaagataaggtgtgtg 36319551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 53
Target Start/End: Original strand, 39386798 - 39386831
Alignment:
Q  20 ttgttatctttaaatttaaacaaaattttgttac 53  Q
    |||||||||| |||||||||||||||||||||||    
T  39386798 ttgttatcttcaaatttaaacaaaattttgttac 39386831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 241 - 274
Target Start/End: Original strand, 52415627 - 52415660
Alignment:
Q  241 acatattaaatttattggaaagataaagtgtgtg 274  Q
    ||||||||||||||||||||||| ||||||||||    
T  52415627 acatattaaatttattggaaagaaaaagtgtgtg 52415660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 340 - 397
Target Start/End: Original strand, 52415728 - 52415785
Alignment:
Q  340 cactttgctatttttatgttaaaattctaaaacgatgcttaaaaaggaacggagggag 397  Q
    ||||||||||||||  || |||  |||||||||||  |||||||||||||||||||||    
T  52415728 cactttgctattttcgtggtaattttctaaaacgacacttaaaaaggaacggagggag 52415785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 63
Target Start/End: Complemental strand, 37710445 - 37710401
Alignment:
Q  19 tttgttatctttaaatttaaacaaaattttgttacctatgataat 63  Q
    |||| |||||| |||||||||||||||||| |||||||| |||||    
T  37710445 tttggtatcttcaaatttaaacaaaattttcttacctataataat 37710401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 70 - 124
Target Start/End: Complemental strand, 40519145 - 40519094
Alignment:
Q  70 atgaagagttaaaattctataaataacatgagtagtacttgttaaaaatttcaag 124  Q
    |||||||||||||||||||||||||| |||   | || |||||||||||||||||    
T  40519145 atgaagagttaaaattctataaataagatg---aataattgttaaaaatttcaag 40519094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0188 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: scaffold0188
Description:

Target: scaffold0188; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 20 - 117
Target Start/End: Complemental strand, 6393 - 6296
Alignment:
Q  20 ttgttatctttaaatttaaacaaaattttgttacctatgataatagttccatgaagagttaaaattctataaataacatgagtagtacttgttaaaaa 117  Q
    |||||||||| | |||||||||||||||||||| |||| ||||| ||| |||||| |||||||||||||||||||| || ||||||| ||||||||||    
T  6393 ttgttatcttaatatttaaacaaaattttgttatctataataatggtttcatgaatagttaaaattctataaataagattagtagtaattgttaaaaa 6296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0242 (Bit Score: 49; Significance: 7e-19; HSPs: 2)
Name: scaffold0242
Description:

Target: scaffold0242; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 20 - 100
Target Start/End: Original strand, 14908 - 14988
Alignment:
Q  20 ttgttatctttaaatttaaacaaaattttgttacctatgataatagttccatgaagagttaaaattctataaataacatga 100  Q
    ||||||||||||||||||| |||||||||||||| ||| |||||  ||  |||||||||||||||||||||||||| ||||    
T  14908 ttgttatctttaaatttaaccaaaattttgttacatataataatgattttatgaagagttaaaattctataaataagatga 14988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0242; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 20 - 100
Target Start/End: Original strand, 23743 - 23823
Alignment:
Q  20 ttgttatctttaaatttaaacaaaattttgttacctatgataatagttccatgaagagttaaaattctataaataacatga 100  Q
    ||||||||||||||||||| |||||||||||||| ||| |||||  ||  |||||||||||||||||||||||||| ||||    
T  23743 ttgttatctttaaatttaaccaaaattttgttacatataataatgattttatgaagagttaaaattctataaataagatga 23823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 47; Significance: 1e-17; HSPs: 3)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 208 - 274
Target Start/End: Complemental strand, 272039 - 271973
Alignment:
Q  208 gagaaagatagtagtaactaacaattctttgttacatattaaatttattggaaagataaagtgtgtg 274  Q
    |||||| | |||||||||||| |||| ||||||||||||||||||||||| ||||||||||||||||    
T  272039 gagaaaaagagtagtaactaataattgtttgttacatattaaatttattgaaaagataaagtgtgtg 271973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 340 - 390
Target Start/End: Complemental strand, 271900 - 271850
Alignment:
Q  340 cactttgctatttttatgttaaaattctaaaacgatgcttaaaaaggaacg 390  Q
    ||||||||||||| | |||||||||||||||||||  ||||||||| ||||    
T  271900 cactttgctatttctgtgttaaaattctaaaacgacacttaaaaagaaacg 271850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 241 - 274
Target Start/End: Original strand, 257262 - 257295
Alignment:
Q  241 acatattaaatttattggaaagataaagtgtgtg 274  Q
    ||||||||||||||||| ||||||||||||||||    
T  257262 acatattaaatttattgaaaagataaagtgtgtg 257295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0097 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 217 - 274
Target Start/End: Complemental strand, 48653 - 48596
Alignment:
Q  217 agtagtaactaacaattctttgttacatattaaatttattggaaagataaagtgtgtg 274  Q
    |||||||||||| |||| ||||||||||||||||||||||| ||| ||| ||||||||    
T  48653 agtagtaactaaaaattgtttgttacatattaaatttattgaaaaaatatagtgtgtg 48596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1327 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold1327
Description:

Target: scaffold1327; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 241 - 275
Target Start/End: Original strand, 1251 - 1285
Alignment:
Q  241 acatattaaatttattggaaagataaagtgtgtgt 275  Q
    ||||||||||||||||| |||||||||||||||||    
T  1251 acatattaaatttattgaaaagataaagtgtgtgt 1285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1986 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold1986
Description:

Target: scaffold1986; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 84 - 124
Target Start/End: Original strand, 321 - 361
Alignment:
Q  84 ttctataaataacatgagtagtacttgttaaaaatttcaag 124  Q
    |||||||||||| |||||||||| | |||||||||||||||    
T  321 ttctataaataagatgagtagtaatcgttaaaaatttcaag 361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University