View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12235_low_11 (Length: 306)
Name: NF12235_low_11
Description: NF12235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12235_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 7 - 287
Target Start/End: Complemental strand, 11346634 - 11346355
Alignment:
| Q |
7 |
cagaacctgtggcatgtattgaacctgagcatttccaaaatctaaccataactatttcttttgttccaccctcatggcttcaacagcaacaccttctcca |
106 |
Q |
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|||||| || ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11346634 |
cagaacatggggcatgtattgaacctgagcatt-ccaaaatctaaccataactatttcttttgttccaccctcatggcttcaacagcaacaccttctcca |
11346536 |
T |
|
| Q |
107 |
caaattctactattcaatccaatcttaggaaacaccaaaacaataagaagaataagaatttttaggatagcaagaacctcaaactctcactacagtttcc |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11346535 |
caaattctactattcaatccaatcttaggaaacaccaaaacaataagaagaataagaatttttaggatagcaagaacctcaaactctcactacagtttcc |
11346436 |
T |
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| Q |
207 |
aagttcatgcttctaaggactctcaaggaccacaaaaagcaccacctggaattgacacaagaattcattgggagaatgatg |
287 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
11346435 |
aagttcatgcttctaaggactctcaaggaccacaaaaagcaccacctggaattgacacaagaatccattgggagaatgatg |
11346355 |
T |
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