View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12235_low_12 (Length: 302)
Name: NF12235_low_12
Description: NF12235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12235_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 19 - 296
Target Start/End: Complemental strand, 8928027 - 8927750
Alignment:
| Q |
19 |
taataacattttcgatcttaacctcccataccaattatatataataaataaacaccaaagactacatcgcttaataatctcagcttattaacaaaaccac |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
8928027 |
taataacattttcgatcttaacctcccataccaattatatataataaataaacaccaaagactaaatcgcttaataatctcagcttattaacaaaaccac |
8927928 |
T |
|
| Q |
119 |
acataatcaatctaataatatgcannnnnnnnnatatggttactacgggtcccacttcaacacttgacatggctttcatcatagcttcaaatctaggctc |
218 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8927927 |
acataatcaatctaataatatgcatttttttttatatggttactacgggtcccacttcaacacttgacatggctttcatcatagcttcaaatctaggctc |
8927828 |
T |
|
| Q |
219 |
tttagcttggaatttgagtcccatatagagtttcatgtaatcatcaaagataaattttggataaatttcacttgtttc |
296 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8927827 |
tttagcttggaatttgagtcccatatagagtttcatgtaatcatcaaagataaattttggataaatttcacttgtttc |
8927750 |
T |
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