View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12235_low_13 (Length: 298)
Name: NF12235_low_13
Description: NF12235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12235_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 21 - 285
Target Start/End: Original strand, 51690771 - 51691040
Alignment:
| Q |
21 |
caggaactcaagaagacagctgaactgcgcagcatatagttg-----ggtttgaataatgattttgaatgaattcacattatttacaagtgagttgaaca |
115 |
Q |
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| T |
51690771 |
caggaactcaagaagacagctgaactgcgcagcatatagttgggttgggtttgaataatgattttgaatgaattcacattatttacaagtgagttgaaca |
51690870 |
T |
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| Q |
116 |
ataaacttatgtttaaaatcgtgtttggaggtgatggttttaaatctcatcttcaaattacaatctaattcagaggcaaaaatagtctcatttccaaaca |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51690871 |
ataaacttatgtttaaaatcgtgtttggaggtgatggttttaaatctcatcttcaaattacaatctaattcagaggcaaaaatagtctcatttccaaaca |
51690970 |
T |
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| Q |
216 |
cacaaactataaaaatcaatgttcttaaaatcacttttacttttcatattagtgaatctaaataggcaca |
285 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51690971 |
cacaaactataaaaatcaatgttcttaaaatcacttttacttttcatattagtgaatctaaataggcaca |
51691040 |
T |
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