View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12235_low_15 (Length: 290)
Name: NF12235_low_15
Description: NF12235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12235_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 167; Significance: 2e-89; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 16 - 272
Target Start/End: Original strand, 5373895 - 5374153
Alignment:
| Q |
16 |
gctctaattaccgatgaattgttcagaagaattcgagttgaaactctgaatcgatnnnnnnnnnnnnnnnngaatcttcatcaatcatacacactcaaca |
115 |
Q |
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| T |
5373895 |
gctctaattaccgatgaattgttcagaagaattcgagttgatactctgaatcgataaaacaaaacaaaaaagaatcttcatcaatcatacacactcaaca |
5373994 |
T |
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| Q |
116 |
gttccaatccacaggttccaaatcaacaataaataccacacaacacatacattctcatatcccagaatcaaaaccnnnnnnngccatagactcataca-- |
213 |
Q |
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| T |
5373995 |
gttccaatccacaggttccaaatcaacaataaataccacacaacacatacattttcatatcccagaatcaaaaccaaaaaaagccatagattcatacact |
5374094 |
T |
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| Q |
214 |
gtctcaataaccatttcattcacagaactttggtgacaaccttaatgatgcagattctc |
272 |
Q |
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| T |
5374095 |
gtctcaataaccatttcattcacagaactttggtgacaaccttaatgatgcagattctc |
5374153 |
T |
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