View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12235_low_16 (Length: 287)
Name: NF12235_low_16
Description: NF12235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12235_low_16 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 20 - 279
Target Start/End: Complemental strand, 15153089 - 15152830
Alignment:
| Q |
20 |
actaagttccagttatggtgtagatgaacatttaaatttgaaaaataatttaatcgttatgggagggtagtttaggtatattgaaaataggctacacaaa |
119 |
Q |
| |
|
|||||||||||||||| ||||||||||| ||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
15153089 |
actaagttccagttatagtgtagatgaaaatttaaatttgaaaaataatttaattgttatgggagggtaatttaggtatattgaaaataggctacacaaa |
15152990 |
T |
|
| Q |
120 |
aaatgaacatttatcctctttattaatggtattgaaaataggccattggccatttcctcgacatctttgtttccgacatccttttctaagtgtatagaac |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15152989 |
aaatgaacatttatcctctttattaatggtattgaaaataggccattggccatttcctcgacatctttgtttccgacatccttttctaagtgtatagaac |
15152890 |
T |
|
| Q |
220 |
tccgactaggcttcgagaaagtcacctccgatggaaatatacctctttgtcatctctgct |
279 |
Q |
| |
|
||||||| ||||||||||||||| ||||||| |||||||||||||||||||||||||||| |
|
|
| T |
15152889 |
tccgactgggcttcgagaaagtcgcctccgacggaaatatacctctttgtcatctctgct |
15152830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University