View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12235_low_4 (Length: 606)
Name: NF12235_low_4
Description: NF12235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12235_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 521; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 521; E-Value: 0
Query Start/End: Original strand, 1 - 595
Target Start/End: Complemental strand, 25524201 - 25523616
Alignment:
| Q |
1 |
tactggttatcacctcttaattatggacagagagcaatttcagtcaatgaatttcttgcaacaagatggtcagaggtacatcgtgcatgcaaattaaatt |
100 |
Q |
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| T |
25524201 |
tactggttatcacctcttaattatggacagagagcaatttcagtcaatgaatttcttgcaacaagatggtcagaggtacattgtgcatgcaaattaaatt |
25524102 |
T |
|
| Q |
101 |
tcatcttttttacattgtaattttttgcatatagtttataaaagatttatggaattatggaaactgtctatttcagccttcggctttagggaacgacaca |
200 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
25524101 |
tcatcttttt-acattgtaattttttgcatatagtttataaaagatttatggaa--------actgtctatttcagccttcggctttagggaacgacaca |
25524011 |
T |
|
| Q |
201 |
gttggtcgaaatatactgaagacatataatttaccaactgaagattactggtattggtttagtatgggaatgttcgtactttacacattgtttttcaaca |
300 |
Q |
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| T |
25524010 |
gttggtcgaaatatactgaagacatataatttaccaactgaagattactggtattggtttagtatgggaatgttcgtactttacacattgtttttcaaca |
25523911 |
T |
|
| Q |
301 |
tctttaccactttggcactgacctatttggaccgtaagttgagagcaatttcttcttcgtattaccatttttatcaatgcaagttcgttcagtaccttcg |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
25523910 |
tctttaccactttggcactgacctatttggaccgtaagttgagagcaatttcttcttcgtattaccatttttatcaatgcaagttcgttcagtatcttcg |
25523811 |
T |
|
| Q |
401 |
tagtttacgttttctatcttggcatgctacagcaatnnnnnnnccaaaagcaattactgaggatgaagttgaagactcagaaaagagttccgaatctaat |
500 |
Q |
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||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25523810 |
tagtttacgttttctatcttggcatgctacagcgataaaaaaaccaaaagcaattactgaggatgaagttgaagactcagaaaagagttccgaatctaat |
25523711 |
T |
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| Q |
501 |
gctaaagaaagaaaaagcaagggaatgattcttccttttgaaccattgacaatgacattccacaatgtcaattattatgttgatatgccacaggt |
595 |
Q |
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| T |
25523710 |
gctaaagaaagcaaaagcaagggaatgattcttccttttgaaccattgacaatgacattccacaatgtcaattattatgttgatatgccacaggt |
25523616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 61; Significance: 7e-26; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 519 - 595
Target Start/End: Original strand, 29776684 - 29776760
Alignment:
| Q |
519 |
aagggaatgattcttccttttgaaccattgacaatgacattccacaatgtcaattattatgttgatatgccacaggt |
595 |
Q |
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| T |
29776684 |
aagggaatgattcttccatttcaaccattgacaatgacattccataatgtcaattattatgttgatatgccaaaggt |
29776760 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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