View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12235_low_6 (Length: 538)
Name: NF12235_low_6
Description: NF12235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12235_low_6 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 487; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 487; E-Value: 0
Query Start/End: Original strand, 7 - 522
Target Start/End: Original strand, 4676502 - 4677017
Alignment:
| Q |
7 |
aggagcagagaccaaaagaaactgaagatcattaacccattccaatgtttgaatcgttcctctccaagcaatcacaatatcccttctccccaacacatct |
106 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4676502 |
aggagcagaaaccaaaagaaactgaagatcattaacccattccaatgtttgaatcgttcctctccaagcaatcacaatatcccttctccccaacacatct |
4676601 |
T |
|
| Q |
107 |
ttcccttcatcattagccacagcaacaaatccaatccaatttgattccttactccaagcttctctagataaagactttataataaacgcttccggaacat |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4676602 |
ttcccttcatcattagccacagcaacaaatccaatccaatttgattccttactccaagcttctctagataaagactttataataaacgcttccggaacat |
4676701 |
T |
|
| Q |
207 |
tgatttcggaagtcgcataaataaattttgtcacagaatatttaaaaggatttccattttctnnnnnnnctttagaaaagaaatcattctttgcatacct |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
4676702 |
tgatttcggaagtcgcataaataaattttgtcacagaatatttaaaaggatttccattttctaaaaaaactttagaaaagaaatcattctttgcatacct |
4676801 |
T |
|
| Q |
307 |
acaactacctgcaaactttgatgctttctctgtgttgaaagcatcgtatgttgcttgtgccatttcaccatagtggattatgtaacgtcgtagatcaatg |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4676802 |
acaactacctgcaaactttgatgctttctctgtgttgaaagcatcgtatgttgcttgtgccatttcaccatagtggattatgtaacgtcgtagatcaatg |
4676901 |
T |
|
| Q |
407 |
tcaagagggtctaatagacctatccaatgattttcaccactgagttgttgccatttgtttgctatgttgctgctgttgtttggtttcttcttcttcaaat |
506 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
4676902 |
tcaagagggtctaatagacctatccaatgattttcaccactgagttgttgccatttgtttgctatgctgctgctgttgtttggtttcttcttcttcaaat |
4677001 |
T |
|
| Q |
507 |
tgtttctccatctttt |
522 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
4677002 |
tgtttctccatctttt |
4677017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University