View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12235_low_7 (Length: 495)

Name: NF12235_low_7
Description: NF12235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12235_low_7
NF12235_low_7
[»] chr8 (2 HSPs)
chr8 (1-325)||(29270074-29270385)
chr8 (391-485)||(29270364-29270458)
[»] scaffold0349 (4 HSPs)
scaffold0349 (1-157)||(17607-17763)
scaffold0349 (202-296)||(16852-16945)
scaffold0349 (423-485)||(16790-16852)
scaffold0349 (156-200)||(16964-17008)
[»] chr6 (45 HSPs)
chr6 (1-157)||(27714181-27714337)
chr6 (288-478)||(27703284-27703480)
chr6 (232-423)||(26059489-26059685)
chr6 (232-423)||(26079459-26079655)
chr6 (202-296)||(27714999-27715092)
chr6 (239-359)||(25486923-25487042)
chr6 (239-359)||(26146521-26146640)
chr6 (403-485)||(27682501-27682583)
chr6 (4-79)||(26628004-26628079)
chr6 (4-79)||(26733981-26734056)
chr6 (1-79)||(27702414-27702492)
chr6 (76-157)||(26627707-26627788)
chr6 (76-157)||(26733684-26733765)
chr6 (423-485)||(27715092-27715154)
chr6 (76-144)||(27702670-27702738)
chr6 (9-79)||(27652343-27652413)
chr6 (7-80)||(26640665-26640738)
chr6 (7-80)||(26746631-26746704)
chr6 (7-71)||(27422574-27422638)
chr6 (7-79)||(31291368-31291440)
chr6 (12-79)||(26828358-26828425)
chr6 (303-359)||(25583207-25583263)
chr6 (7-71)||(26966104-26966168)
chr6 (387-471)||(27078974-27079057)
chr6 (259-334)||(27423905-27423979)
chr6 (231-352)||(27661929-27662049)
chr6 (239-307)||(25986741-25986808)
chr6 (156-200)||(27714936-27714980)
chr6 (76-143)||(27660703-27660770)
chr6 (231-325)||(27079032-27079125)
chr6 (9-70)||(26890066-26890127)
chr6 (76-136)||(26650492-26650552)
chr6 (7-71)||(26651110-26651174)
chr6 (76-136)||(26756460-26756520)
chr6 (7-71)||(26757078-26757142)
chr6 (383-422)||(26852258-26852297)
chr6 (76-134)||(26807072-26807130)
chr6 (11-71)||(26631460-26631520)
chr6 (76-128)||(26639748-26639800)
chr6 (11-71)||(26737435-26737495)
chr6 (76-128)||(26745714-26745766)
chr6 (14-69)||(26853623-26853677)
chr6 (239-293)||(25514427-25514480)
chr6 (76-138)||(27419460-27419522)
chr6 (76-144)||(26963723-26963791)
[»] chr4 (11 HSPs)
chr4 (76-157)||(18675056-18675137)
chr4 (76-157)||(18685629-18685710)
chr4 (74-157)||(18683371-18683454)
chr4 (76-157)||(18719586-18719667)
chr4 (76-144)||(18693111-18693179)
chr4 (76-144)||(18650937-18651005)
chr4 (76-138)||(18726883-18726945)
chr4 (78-144)||(5082450-5082516)
chr4 (46-79)||(18674450-18674483)
chr4 (46-79)||(18692521-18692554)
chr4 (46-79)||(18719020-18719053)
[»] scaffold0003 (3 HSPs)
scaffold0003 (7-71)||(64725-64789)
scaffold0003 (259-334)||(63384-63458)
scaffold0003 (76-138)||(67841-67903)


Alignment Details
Target: chr8 (Bit Score: 260; Significance: 1e-144; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 260; E-Value: 1e-144
Query Start/End: Original strand, 1 - 325
Target Start/End: Original strand, 29270074 - 29270385
Alignment:
Q  1 tacatgtggtttcctgacaatgtacagtcaaagaacaagaaaatacttagttttggttagagaaaagttgcgtaaattatgattaaaaccatttaagctt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  29270074 tacatgtggtttcctgacaatgtacagtcaaagaacaagaaaatacttagttttggttagagaaaagttgcgtaaattatgattataaccatttaagctt 29270173  T
Q  101 tcgaagtataaggatcttatttgtaacaccattcatcttggatctggcactatttataaagtgttgcaataattgagatgttgcacatgccttgcatcat 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  29270174 tcgaagtataaggatcttatttgtaacaccattcatcttggatctggcactatttataaagtgttgcaataattgagatgttccacatgccttgcatcat 29270273  T
Q  201 gtctcaatggtttataataatgataatgacgtaaacagcaaagcacaaacctgtattcttgacattgagagaataacaaagaagacggttaactttataa 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||            |||||||||| ||||||||||||||||||||||    
T  29270274 gtctcaatggtttataataatgataatgacgtaaacagcaaagcacaaacctgta------------agagaataac-aagaagacggttaactttataa 29270360  T
Q  301 tggacctagaccaaggaatgtaccc 325  Q
    ||||||||||| |||| ||||||||    
T  29270361 tggacctagactaaggtatgtaccc 29270385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 391 - 485
Target Start/End: Original strand, 29270364 - 29270458
Alignment:
Q  391 acctagactaaggaatgtaccccatgtctttctttgttcctctttcgtcaaatcctgttgttgcaatgaagcattgatatcctcctctgtctctg 485  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29270364 acctagactaaggtatgtaccccatgtctttctttgttcctctttcgtcaaatcctgttgttgcaatgaagcattgatatcctcctctgtctctg 29270458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 157; Significance: 3e-83; HSPs: 4)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 17763 - 17607
Alignment:
Q  1 tacatgtggtttcctgacaatgtacagtcaaagaacaagaaaatacttagttttggttagagaaaagttgcgtaaattatgattaaaaccatttaagctt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17763 tacatgtggtttcctgacaatgtacagtcaaagaacaagaaaatacttagttttggttagagaaaagttgcgtaaattatgattaaaaccatttaagctt 17664  T
Q  101 tcgaagtataaggatcttatttgtaacaccattcatcttggatctggcactatttat 157  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17663 tcgaagtataaggatcttatttgtaacaccattcatcttggatctggcactatttat 17607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 202 - 296
Target Start/End: Complemental strand, 16945 - 16852
Alignment:
Q  202 tctcaatggtttataataatgataatgacgtaaacagcaaagcacaaacctgtattcttgacattgagagaataacaaagaagacggttaacttt 296  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| ||||||||    
T  16945 tctcaatggtttataataatgataatgacgtaaacagcaaagcacaaacctgtattcttgagattgagagaataac-aagaagacgattaacttt 16852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349; HSP #3
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 423 - 485
Target Start/End: Complemental strand, 16852 - 16790
Alignment:
Q  423 tttgttcctctttcgtcaaatcctgttgttgcaatgaagcattgatatcctcctctgtctctg 485  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  16852 tttgttcctctttcgtcaaatcctgctgttgcaatgaagcattgatatcctcctctgtctctg 16790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 156 - 200
Target Start/End: Complemental strand, 17008 - 16964
Alignment:
Q  156 ataaagtgttgcaataattgagatgttgcacatgccttgcatcat 200  Q
    ||||||||||||||||||||||||||| |||||||||||||||||    
T  17008 ataaagtgttgcaataattgagatgttccacatgccttgcatcat 16964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 157; Significance: 3e-83; HSPs: 45)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 1 - 157
Target Start/End: Original strand, 27714181 - 27714337
Alignment:
Q  1 tacatgtggtttcctgacaatgtacagtcaaagaacaagaaaatacttagttttggttagagaaaagttgcgtaaattatgattaaaaccatttaagctt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27714181 tacatgtggtttcctgacaatgtacagtcaaagaacaagaaaatacttagttttggttagagaaaagttgcgtaaattatgattaaaaccatttaagctt 27714280  T
Q  101 tcgaagtataaggatcttatttgtaacaccattcatcttggatctggcactatttat 157  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27714281 tcgaagtataaggatcttatttgtaacaccattcatcttggatctggcactatttat 27714337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 288 - 478
Target Start/End: Original strand, 27703284 - 27703480
Alignment:
Q  288 gttaactttataatggacctagaccaaggaatgtacccagcatctttctttcatcttgtgcactgctgaataccacattctcatca------gtgttgct 381  Q
    ||||||||||| ||||| ||||||||||||||||||||  |||| ||||||||||||||||| || | || |   || |||||||       ||||||||    
T  27703284 gttaactttatgatggagctagaccaaggaatgtaccccacatcattctttcatcttgtgcattgtttaaaatttcaatctcatccccatgcgtgttgct 27703383  T
Q  382 ttttgatgcacctagactaaggaatgtaccccatgtctttctttgttcctctttcgtcaaatcctgttgttgcaatgaagcattgatatcctcctct 478  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||| | |||||||||||||||||||||||||||||||||||||||    
T  27703384 ttttgatgcacctagactaaggaatgtaccccatgtctttttttgttcctctttctttaaatcctgttgttgcaatgaagcattgatatcctcctct 27703480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 232 - 423
Target Start/End: Complemental strand, 26059685 - 26059489
Alignment:
Q  232 taaacagcaaagcacaaacctgtattcttgacattgagagaataacaaagaagacggttaactttataatggacctagaccaaggaatgtacccagcatc 331  Q
    |||||| ||||||||||||||| | | |||| |||||||||||||||| |||||||||||||||||| ||||||||| ||| ||||||||||||  ||||    
T  26059685 taaacatcaaagcacaaacctgcaatgttgagattgagagaataacaa-gaagacggttaactttatgatggacctaaaccgaggaatgtaccccacatc 26059587  T
Q  332 tttctttcatcttgtgcactgctgaat------accacattctcatcagtgttgctttttgatgcacctagactaaggaatgtaccccatgtctttct 423  Q
    ||||||||||||||||||||||| |||      | | ||| | |||| ||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  26059586 tttctttcatcttgtgcactgcttaatatttcaatctcatccccatccgtgttgctttttgatgcacctagactaaggaatgtaccccaagtctttct 26059489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 232 - 423
Target Start/End: Complemental strand, 26079655 - 26079459
Alignment:
Q  232 taaacagcaaagcacaaacctgtattcttgacattgagagaataacaaagaagacggttaactttataatggacctagaccaaggaatgtacccagcatc 331  Q
    |||||| ||||||||||||||| | | |||| |||||||||||||||| |||||||||||||||||| ||||||||| ||| ||||||||||||  ||||    
T  26079655 taaacatcaaagcacaaacctgcaatgttgagattgagagaataacaa-gaagacggttaactttatgatggacctaaaccgaggaatgtaccccacatc 26079557  T
Q  332 tttctttcatcttgtgcactgctgaat------accacattctcatcagtgttgctttttgatgcacctagactaaggaatgtaccccatgtctttct 423  Q
    ||||||||||||||||||||||| |||      | | ||| | |||| ||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  26079556 tttctttcatcttgtgcactgcttaatatttcaatctcatccccatccgtgttgctttttgatgcacctagactaaggaatgtaccccaagtctttct 26079459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 202 - 296
Target Start/End: Original strand, 27714999 - 27715092
Alignment:
Q  202 tctcaatggtttataataatgataatgacgtaaacagcaaagcacaaacctgtattcttgacattgagagaataacaaagaagacggttaacttt 296  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| ||||||||    
T  27714999 tctcaatggtttataataatgataatgacgtaaacagcaaagcacaaacctgtattcttgagattgagagaataac-aagaagacgattaacttt 27715092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 239 - 359
Target Start/End: Complemental strand, 25487042 - 25486923
Alignment:
Q  239 caaagcacaaacctgtattcttgacattgagagaataacaaagaagacggttaactttataatggacctagaccaaggaatgtacccagcatctttcttt 338  Q
    ||||||||||||||| | | |||| |||||||||||||||| |||||||||||||||||| |||||||||||| |||||||||||||| |||||||||||    
T  25487042 caaagcacaaacctgcaatgttgagattgagagaataacaa-gaagacggttaactttatgatggacctagactaaggaatgtacccaacatctttcttt 25486944  T
Q  339 catcttgtgcactgctgaata 359  Q
    ||||||| |||||||| ||||    
T  25486943 catcttgcgcactgcttaata 25486923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 239 - 359
Target Start/End: Complemental strand, 26146640 - 26146521
Alignment:
Q  239 caaagcacaaacctgtattcttgacattgagagaataacaaagaagacggttaactttataatggacctagaccaaggaatgtacccagcatctttcttt 338  Q
    ||||||||||||||| | | |||| |||||||||||||||| |||||||||||||||||| |||||||||||| |||||||||||||| |||||||||||    
T  26146640 caaagcacaaacctgcaatgttgagattgagagaataacaa-gaagacggttaactttatgatggacctagactaaggaatgtacccaacatctttcttt 26146542  T
Q  339 catcttgtgcactgctgaata 359  Q
    ||||||| |||||||| ||||    
T  26146541 catcttgcgcactgcttaata 26146521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 403 - 485
Target Start/End: Complemental strand, 27682583 - 27682501
Alignment:
Q  403 gaatgtaccccatgtctttctttgttcctctttcgtcaaatcctgttgttgcaatgaagcattgatatcctcctctgtctctg 485  Q
    |||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||    
T  27682583 gaatgtaccccatgtctttctttgttcctctttcatcaattcctgttgttgcaatgaagcattgatatcctcctctgtctctg 27682501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 4 - 79
Target Start/End: Complemental strand, 26628079 - 26628004
Alignment:
Q  4 atgtggtttcctgacaatgtacagtcaaagaacaagaaaatacttagttttggttagagaaaagttgcgtaaatta 79  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  26628079 atgtggtttcctgacaatgtacagtcaaagaacaaaaaaatacttagttttggttagagaaaagttgcgtaaatta 26628004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 4 - 79
Target Start/End: Complemental strand, 26734056 - 26733981
Alignment:
Q  4 atgtggtttcctgacaatgtacagtcaaagaacaagaaaatacttagttttggttagagaaaagttgcgtaaatta 79  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  26734056 atgtggtttcctgacaatgtacagtcaaagaacaaaaaaatacttagttttggttagagaaaagttgcgtaaatta 26733981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 27702414 - 27702492
Alignment:
Q  1 tacatgtggtttcctgacaatgtacagtcaaagaacaagaaaatacttagttttggttagagaaaagttgcgtaaatta 79  Q
    ||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  27702414 tacatgtcgtttcctgacaatgtacagtcaaaaaacaagaaaatacttagttttggttagagaaaagttgcgtaaatta 27702492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 76 - 157
Target Start/End: Complemental strand, 26627788 - 26627707
Alignment:
Q  76 attatgattaaaaccatttaagctttcgaagtataaggatcttatttgtaacaccattcatcttggatctggcactatttat 157  Q
    ||||||||||||| |||||| ||||||||||||||||||||||| |||||||||||||||||||||||  ||||||||||||    
T  26627788 attatgattaaaagcatttatgctttcgaagtataaggatcttacttgtaacaccattcatcttggattcggcactatttat 26627707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 76 - 157
Target Start/End: Complemental strand, 26733765 - 26733684
Alignment:
Q  76 attatgattaaaaccatttaagctttcgaagtataaggatcttatttgtaacaccattcatcttggatctggcactatttat 157  Q
    ||||||||||||| |||||| ||||||||||||||||||||||| |||||||||||||||||||||||  ||||||||||||    
T  26733765 attatgattaaaagcatttatgctttcgaagtataaggatcttacttgtaacaccattcatcttggattcggcactatttat 26733684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 423 - 485
Target Start/End: Original strand, 27715092 - 27715154
Alignment:
Q  423 tttgttcctctttcgtcaaatcctgttgttgcaatgaagcattgatatcctcctctgtctctg 485  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  27715092 tttgttcctctttcgtcaaatcctgctgttgcaatgaagcattgatatcctcctctgtctctg 27715154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 76 - 144
Target Start/End: Original strand, 27702670 - 27702738
Alignment:
Q  76 attatgattaaaaccatttaagctttcgaagtataaggatcttatttgtaacaccattcatcttggatc 144  Q
    |||||||||||||||||||| ||||||||||||||| ||||||| |||||| |||||||||||||||||    
T  27702670 attatgattaaaaccatttatgctttcgaagtataaagatcttacttgtaaaaccattcatcttggatc 27702738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 9 - 79
Target Start/End: Original strand, 27652343 - 27652413
Alignment:
Q  9 gtttcctgacaatgtacagtcaaagaacaagaaaatacttagttttggttagagaaaagttgcgtaaatta 79  Q
    |||||||||||||||| |||||| ||||||| |||| ||||||||||||||||||||||||||||| ||||    
T  27652343 gtttcctgacaatgtaaagtcaatgaacaagtaaatgcttagttttggttagagaaaagttgcgtatatta 27652413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 7 - 80
Target Start/End: Complemental strand, 26640738 - 26640665
Alignment:
Q  7 tggtttcctgacaatgtacagtcaaagaacaagaaaatacttagttttggttagagaaaagttgcgtaaattat 80  Q
    |||||||||||||||||||||||||||||| || |||| ||||||||||| |||||||||| | ||||||||||    
T  26640738 tggtttcctgacaatgtacagtcaaagaactagtaaatgcttagttttggatagagaaaagctccgtaaattat 26640665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 7 - 80
Target Start/End: Complemental strand, 26746704 - 26746631
Alignment:
Q  7 tggtttcctgacaatgtacagtcaaagaacaagaaaatacttagttttggttagagaaaagttgcgtaaattat 80  Q
    |||||||||||||||||||||||||||||| || |||| ||||||||||| |||||||||| | ||||||||||    
T  26746704 tggtttcctgacaatgtacagtcaaagaactagtaaatgcttagttttggatagagaaaagctccgtaaattat 26746631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 7 - 71
Target Start/End: Original strand, 27422574 - 27422638
Alignment:
Q  7 tggtttcctgacaatgtacagtcaaagaacaagaaaatacttagttttggttagagaaaagttgc 71  Q
    ||||||||||||||||||||| ||||||||||| |||| ||||||||| ||||||||||||||||    
T  27422574 tggtttcctgacaatgtacagacaaagaacaagtaaatgcttagttttcgttagagaaaagttgc 27422638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 7 - 79
Target Start/End: Complemental strand, 31291440 - 31291368
Alignment:
Q  7 tggtttcctgacaatgtacagtcaaagaacaagaaaatacttagttttggttagagaaaagttgcgtaaatta 79  Q
    |||||||||| ||||  ||| || |||||||||||||||||||||||| ||||||||||||||||||||||||    
T  31291440 tggtttcctggcaattcacaatcgaagaacaagaaaatacttagtttttgttagagaaaagttgcgtaaatta 31291368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 12 - 79
Target Start/End: Complemental strand, 26828425 - 26828358
Alignment:
Q  12 tcctgacaatgtacagtcaaagaacaagaaaatacttagttttggttagagaaaagttgcgtaaatta 79  Q
    ||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||  ||||||||    
T  26828425 tcctgacaatgtacagtcaaaaaacaagaaaatgcttagttttggatagagaaaagttctgtaaatta 26828358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 303 - 359
Target Start/End: Complemental strand, 25583263 - 25583207
Alignment:
Q  303 gacctagaccaaggaatgtacccagcatctttctttcatcttgtgcactgctgaata 359  Q
    |||||| ||||||||||||||||| ||||||||||||||||||||||||||| ||||    
T  25583263 gacctaaaccaaggaatgtacccaacatctttctttcatcttgtgcactgcttaata 25583207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 7 - 71
Target Start/End: Complemental strand, 26966168 - 26966104
Alignment:
Q  7 tggtttcctgacaatgtacagtcaaagaacaagaaaatacttagttttggttagagaaaagttgc 71  Q
    |||| |||||||||||||||||||||||||||| |||  ||||||||||||| ||||||||||||    
T  26966168 tggtgtcctgacaatgtacagtcaaagaacaagtaaaagcttagttttggtttgagaaaagttgc 26966104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 387 - 471
Target Start/End: Complemental strand, 27079057 - 27078974
Alignment:
Q  387 atgcacctagactaaggaatgtaccccatgtctttctttgttcctctttcgtcaaatcctgttgttgcaatgaagcattgatatc 471  Q
    |||||||||||| |||||||||||||||||||||||||| |||| ||||  |||| |||| ||||||||| ||||| ||||||||    
T  27079057 atgcacctagacaaaggaatgtaccccatgtctttctttcttccacttttatcaattccttttgttgcaacgaagc-ttgatatc 27078974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 259 - 334
Target Start/End: Original strand, 27423905 - 27423979
Alignment:
Q  259 ttgacattgagagaataacaaagaagacggttaactttataatggacctagaccaaggaatgtacccagcatcttt 334  Q
    |||| ||||||||||||||||  ||| ||||||||||||| ||| ||||||||||||||||||||||| |||||||    
T  27423905 ttgagattgagagaataacaacaaag-cggttaactttatgatgaacctagaccaaggaatgtacccaacatcttt 27423979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 231 - 352
Target Start/End: Original strand, 27661929 - 27662049
Alignment:
Q  231 gtaaacagcaaagcacaaacctgtattcttgacattgagagaataacaaagaagacggttaactttataatggacctagaccaaggaatgtacccagcat 330  Q
    |||||||| |||||||||||||| |   |||| |||||||| |||||||  |||||||||||||||||   | |||| || ||||||||||||||  |||    
T  27661929 gtaaacagtaaagcacaaacctgcaaagttgagattgagaggataacaac-aagacggttaactttatggcgcacctggatcaaggaatgtaccccacat 27662027  T
Q  331 ctttctttcatcttgtgcactg 352  Q
     ||||||||||||||| |||||    
T  27662028 atttctttcatcttgtccactg 27662049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 239 - 307
Target Start/End: Complemental strand, 25986808 - 25986741
Alignment:
Q  239 caaagcacaaacctgtattcttgacattgagagaataacaaagaagacggttaactttataatggacct 307  Q
    ||||||||||||||| | | |||| |||||||||||||||| |||||||||||||||||| ||||||||    
T  25986808 caaagcacaaacctgcaatgttgagattgagagaataacaa-gaagacggttaactttatgatggacct 25986741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 156 - 200
Target Start/End: Original strand, 27714936 - 27714980
Alignment:
Q  156 ataaagtgttgcaataattgagatgttgcacatgccttgcatcat 200  Q
    ||||||||||||||||||||||||||| |||||||||||||||||    
T  27714936 ataaagtgttgcaataattgagatgttccacatgccttgcatcat 27714980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 76 - 143
Target Start/End: Original strand, 27660703 - 27660770
Alignment:
Q  76 attatgattaaaaccatttaagctttcgaagtataaggatcttatttgtaacaccattcatcttggat 143  Q
    ||||||||||||| ||||||  ||||| |||||||||||||||| |||||||| ||||||||| ||||    
T  27660703 attatgattaaaagcatttattctttcaaagtataaggatcttacttgtaacaacattcatctaggat 27660770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 231 - 325
Target Start/End: Complemental strand, 27079125 - 27079032
Alignment:
Q  231 gtaaacagcaaagcacaaacctgtattcttgacattgagagaataacaaagaagacggttaactttataatggacctagaccaaggaatgtaccc 325  Q
    ||||||||||||||||||||||  | | |||| |||||||||||||| || |||| || |||| | |||||| |||||||| |||||||||||||    
T  27079125 gtaaacagcaaagcacaaaccttcaatgttgagattgagagaataac-aacaagatggctaacctcataatgcacctagacaaaggaatgtaccc 27079032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 9 - 70
Target Start/End: Complemental strand, 26890127 - 26890066
Alignment:
Q  9 gtttcctgacaatgtacagtcaaagaacaagaaaatacttagttttggttagagaaaagttg 70  Q
    |||||||||||||||||||||||| || ||  ||||  ||||||||||||||||||||||||    
T  26890127 gtttcctgacaatgtacagtcaaataaaaaataaatgtttagttttggttagagaaaagttg 26890066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 76 - 136
Target Start/End: Complemental strand, 26650552 - 26650492
Alignment:
Q  76 attatgattaaaaccatttaagctttcgaagtataaggatcttatttgtaacaccattcat 136  Q
    ||||||||||||| |||||| | |||| |||||||||||||||| |||||||| |||||||    
T  26650552 attatgattaaaagcatttatggtttcaaagtataaggatcttacttgtaacaacattcat 26650492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 7 - 71
Target Start/End: Complemental strand, 26651174 - 26651110
Alignment:
Q  7 tggtttcctgacaatgtacagtcaaagaacaagaaaatacttagttttggttagagaaaagttgc 71  Q
    ||||||||||||||||||||| |||||||||||  ||| | |||||||||||| |||||| ||||    
T  26651174 tggtttcctgacaatgtacagacaaagaacaagttaattcgtagttttggttaaagaaaacttgc 26651110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 76 - 136
Target Start/End: Complemental strand, 26756520 - 26756460
Alignment:
Q  76 attatgattaaaaccatttaagctttcgaagtataaggatcttatttgtaacaccattcat 136  Q
    ||||||||||||| |||||| | |||| |||||||||||||||| |||||||| |||||||    
T  26756520 attatgattaaaagcatttatggtttcaaagtataaggatcttacttgtaacaacattcat 26756460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 7 - 71
Target Start/End: Complemental strand, 26757142 - 26757078
Alignment:
Q  7 tggtttcctgacaatgtacagtcaaagaacaagaaaatacttagttttggttagagaaaagttgc 71  Q
    ||||||||||||||||||||| |||||||||||  ||| | |||||||||||| |||||| ||||    
T  26757142 tggtttcctgacaatgtacagacaaagaacaagttaattcgtagttttggttaaagaaaacttgc 26757078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 383 - 422
Target Start/End: Complemental strand, 26852297 - 26852258
Alignment:
Q  383 tttgatgcacctagactaaggaatgtaccccatgtctttc 422  Q
    |||||||||||||||||||||||||||||||| |||||||    
T  26852297 tttgatgcacctagactaaggaatgtaccccaagtctttc 26852258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 76 - 134
Target Start/End: Complemental strand, 26807130 - 26807072
Alignment:
Q  76 attatgattaaaaccatttaagctttcgaagtataaggatcttatttgtaacaccattc 134  Q
    ||||||| ||||| |||||| |||||| |||||||||||||||| |||||||| |||||    
T  26807130 attatgactaaaagcatttatgctttcaaagtataaggatcttacttgtaacaacattc 26807072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 11 - 71
Target Start/End: Complemental strand, 26631520 - 26631460
Alignment:
Q  11 ttcctgacaatgtacagtcaaagaacaagaaaatacttagttttggttagagaaaagttgc 71  Q
    ||||||| |||||||| || |||| |||| |||| ||| ||||||||||||||||||||||    
T  26631520 ttcctgaaaatgtacattccaagagcaagtaaatgctttgttttggttagagaaaagttgc 26631460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 76 - 128
Target Start/End: Complemental strand, 26639800 - 26639748
Alignment:
Q  76 attatgattaaaaccatttaagctttcgaagtataaggatcttatttgtaaca 128  Q
    ||||||||||||| |||||| | |||| |||||||||||||||| ||||||||    
T  26639800 attatgattaaaagcatttatgttttcaaagtataaggatcttacttgtaaca 26639748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #40
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 11 - 71
Target Start/End: Complemental strand, 26737495 - 26737435
Alignment:
Q  11 ttcctgacaatgtacagtcaaagaacaagaaaatacttagttttggttagagaaaagttgc 71  Q
    ||||||| |||||||| || |||| |||| |||| ||| ||||||||||||||||||||||    
T  26737495 ttcctgaaaatgtacattccaagagcaagtaaatgctttgttttggttagagaaaagttgc 26737435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #41
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 76 - 128
Target Start/End: Complemental strand, 26745766 - 26745714
Alignment:
Q  76 attatgattaaaaccatttaagctttcgaagtataaggatcttatttgtaaca 128  Q
    ||||||||||||| |||||| | |||| |||||||||||||||| ||||||||    
T  26745766 attatgattaaaagcatttatgttttcaaagtataaggatcttacttgtaaca 26745714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #42
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 14 - 69
Target Start/End: Complemental strand, 26853677 - 26853623
Alignment:
Q  14 ctgacaatgtacagtcaaagaacaagaaaatacttagttttggttagagaaaagtt 69  Q
    ||||||||| || ||||||||||||| || | ||||||||||||||||||||||||    
T  26853677 ctgacaatgcacggtcaaagaacaagtaatt-cttagttttggttagagaaaagtt 26853623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #43
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 239 - 293
Target Start/End: Complemental strand, 25514480 - 25514427
Alignment:
Q  239 caaagcacaaacctgtattcttgacattgagagaataacaaagaagacggttaac 293  Q
    ||||||||||||||| | | |||| |||||||||||||| |||||||||||||||    
T  25514480 caaagcacaaacctgcaatgttgagattgagagaataac-aagaagacggttaac 25514427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #44
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 76 - 138
Target Start/End: Original strand, 27419460 - 27419522
Alignment:
Q  76 attatgattaaaaccatttaagctttcgaagtataaggatcttatttgtaacaccattcatct 138  Q
    |||||||||| ||  | ||| |||||| |||||||||||||||| |||||||| |||||||||    
T  27419460 attatgattataagaacttatgctttcaaagtataaggatcttacttgtaacagcattcatct 27419522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #45
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 76 - 144
Target Start/End: Complemental strand, 26963791 - 26963723
Alignment:
Q  76 attatgattaaaaccatttaagctttcgaagtataaggatcttatttgtaacaccattcatcttggatc 144  Q
    ||||||||||| | |||||  | |||| |||||||||||||||| |||||||| |||||| || |||||    
T  26963791 attatgattaagagcatttgtggtttcaaagtataaggatcttacttgtaacaacattcacctaggatc 26963723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 8e-22; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 76 - 157
Target Start/End: Original strand, 18675056 - 18675137
Alignment:
Q  76 attatgattaaaaccatttaagctttcgaagtataaggatcttatttgtaacaccattcatcttggatctggcactatttat 157  Q
    |||||||||||||||||||| |||||| |||||||||||||||| |||||||| ||||||||| ||||| ||||| ||||||    
T  18675056 attatgattaaaaccatttatgctttcaaagtataaggatcttacttgtaacaacattcatctaggatccggcacaatttat 18675137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 76 - 157
Target Start/End: Original strand, 18685629 - 18685710
Alignment:
Q  76 attatgattaaaaccatttaagctttcgaagtataaggatcttatttgtaacaccattcatcttggatctggcactatttat 157  Q
    |||||||||||||||||||| |||||| |||||||||||||||| ||||||||  |||||||| ||||| ||||| ||||||    
T  18685629 attatgattaaaaccatttatgctttcaaagtataaggatcttacttgtaacaaaattcatctaggatccggcacaatttat 18685710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 74 - 157
Target Start/End: Original strand, 18683371 - 18683454
Alignment:
Q  74 aaattatgattaaaaccatttaagctttcgaagtataaggatcttatttgtaacaccattcatcttggatctggcactatttat 157  Q
    |||||||||||||||| ||||| |||||| |||||||||||||||| |||||||| ||||||| | ||||| ||||| ||||||    
T  18683371 aaattatgattaaaacaatttatgctttcaaagtataaggatcttacttgtaacaacattcatgtaggatccggcacaatttat 18683454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 76 - 157
Target Start/End: Original strand, 18719586 - 18719667
Alignment:
Q  76 attatgattaaaaccatttaagctttcgaagtataaggatcttatttgtaacaccattcatcttggatctggcactatttat 157  Q
    |||||||||||||||||||  |||||| |||||||||||||||| ||||||||  |||||||| ||||| ||||| ||||||    
T  18719586 attatgattaaaaccatttttgctttcaaagtataaggatcttacttgtaacaatattcatctaggatccggcacaatttat 18719667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 76 - 144
Target Start/End: Original strand, 18693111 - 18693179
Alignment:
Q  76 attatgattaaaaccatttaagctttcgaagtataaggatcttatttgtaacaccattcatcttggatc 144  Q
    |||||||||||||||||||| |||||| | |||||||||||||| |||||||| ||||||||| |||||    
T  18693111 attatgattaaaaccatttatgctttcaaggtataaggatcttacttgtaacaacattcatctaggatc 18693179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 76 - 144
Target Start/End: Original strand, 18650937 - 18651005
Alignment:
Q  76 attatgattaaaaccatttaagctttcgaagtataaggatcttatttgtaacaccattcatcttggatc 144  Q
    ||||||||||||||||||||  ||||| |||||||||||||||| ||| |||| ||||||||| |||||    
T  18650937 attatgattaaaaccatttatactttcaaagtataaggatcttacttgcaacaacattcatctaggatc 18651005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 76 - 138
Target Start/End: Original strand, 18726883 - 18726945
Alignment:
Q  76 attatgattaaaaccatttaagctttcgaagtataaggatcttatttgtaacaccattcatct 138  Q
    |||||||||||||||||||  |||||| |||||||||||||||| ||||||||  ||||||||    
T  18726883 attatgattaaaaccatttttgctttcaaagtataaggatcttacttgtaacaatattcatct 18726945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 78 - 144
Target Start/End: Complemental strand, 5082516 - 5082450
Alignment:
Q  78 tatgattaaaaccatttaagctttcgaagtataaggatcttatttgtaacaccattcatcttggatc 144  Q
    ||||||||||| ||||||  ||||| ||| |||||||||||| |||||||| | ||||||| |||||    
T  5082516 tatgattaaaagcatttatactttcaaagcataaggatcttacttgtaacagcgttcatctaggatc 5082450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 46 - 79
Target Start/End: Original strand, 18674450 - 18674483
Alignment:
Q  46 cttagttttggttagagaaaagttgcgtaaatta 79  Q
    ||||||||||||||||||||||||| ||||||||    
T  18674450 cttagttttggttagagaaaagttgtgtaaatta 18674483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 46 - 79
Target Start/End: Original strand, 18692521 - 18692554
Alignment:
Q  46 cttagttttggttagagaaaagttgcgtaaatta 79  Q
    ||||||||||||||||||||||||| ||||||||    
T  18692521 cttagttttggttagagaaaagttgtgtaaatta 18692554  T

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Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 46 - 79
Target Start/End: Original strand, 18719020 - 18719053
Alignment:
Q  46 cttagttttggttagagaaaagttgcgtaaatta 79  Q
    ||||||||||||||||||||||||| ||||||||    
T  18719020 cttagttttggttagagaaaagttgtgtaaatta 18719053  T

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Target: scaffold0003 (Bit Score: 49; Significance: 8e-19; HSPs: 3)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 7 - 71
Target Start/End: Complemental strand, 64789 - 64725
Alignment:
Q  7 tggtttcctgacaatgtacagtcaaagaacaagaaaatacttagttttggttagagaaaagttgc 71  Q
    ||||||||||||||||||||| ||||||||||| |||| ||||||||| ||||||||||||||||    
T  64789 tggtttcctgacaatgtacagacaaagaacaagtaaatgcttagttttcgttagagaaaagttgc 64725  T

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Target: scaffold0003; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 259 - 334
Target Start/End: Complemental strand, 63458 - 63384
Alignment:
Q  259 ttgacattgagagaataacaaagaagacggttaactttataatggacctagaccaaggaatgtacccagcatcttt 334  Q
    |||| ||||||||||||||||  ||| ||||||||||||| ||| ||||||||||||||||||||||| |||||||    
T  63458 ttgagattgagagaataacaacaaag-cggttaactttatgatgaacctagaccaaggaatgtacccaacatcttt 63384  T

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Target: scaffold0003; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 76 - 138
Target Start/End: Complemental strand, 67903 - 67841
Alignment:
Q  76 attatgattaaaaccatttaagctttcgaagtataaggatcttatttgtaacaccattcatct 138  Q
    |||||||||| ||  | ||| |||||| |||||||||||||||| |||||||| |||||||||    
T  67903 attatgattataagaacttatgctttcaaagtataaggatcttacttgtaacagcattcatct 67841  T

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