View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12236_high_1 (Length: 439)
Name: NF12236_high_1
Description: NF12236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12236_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 263; Significance: 1e-146; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 18 - 320
Target Start/End: Original strand, 42640541 - 42640842
Alignment:
| Q |
18 |
atattgtcaaactcatagccagtccaaacatatattatctgttacggatacaagtacaattaagtgattcaagttgatcggttggaattaataatgtctt |
117 |
Q |
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| T |
42640541 |
atattgtcaaactcatagtctgtccaaacatatatgatctgttacggatacaagtacaattaagtgattcaagttgatcggttggaattattaatgtctt |
42640640 |
T |
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| Q |
118 |
aaatgttttgatttatttattggtagaaacccctgaaaataaattgtgacaagggtaacttaggtgtccttacaaatcaatttgcggaggtcaaaatctc |
217 |
Q |
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| T |
42640641 |
gaatgttttgatt-atttattggtagaaacccctgaaaataaattgtgacaagggtaacttaggtgtccttacgaatcaatttgtggaggtcaaaatctc |
42640739 |
T |
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| Q |
218 |
tgtaaattagtttagtcaatgcaaacatatactatgtatgtgttgcgaatacaagtagtggattcgactggaattgataatgattacgtagctatttatg |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
42640740 |
tgtaaattagtttagtcaatgcaaacatatactatgtatgtgttgcgaatacaagtagtggaatcgactggaattgataatgattacgtagctatttatg |
42640839 |
T |
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| Q |
318 |
ttt |
320 |
Q |
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||| |
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| T |
42640840 |
ttt |
42640842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 318 - 419
Target Start/End: Original strand, 42641017 - 42641118
Alignment:
| Q |
318 |
ttttggacaaacgttttaatttatttcttactagaaactcccgcaaataaattgtgacacaagtaactgaggtttcttcacaaaccaatttgtactcagc |
417 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
42641017 |
ttttggacaaacgttttaatttatttcttactagaaactcccgcaaataaattgtgacacaagtaactgaggtttcttcgcaaaccaatttgtactcagc |
42641116 |
T |
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| Q |
418 |
tc |
419 |
Q |
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|| |
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| T |
42641117 |
tc |
42641118 |
T |
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