View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12236_high_4 (Length: 268)
Name: NF12236_high_4
Description: NF12236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12236_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 64 - 257
Target Start/End: Complemental strand, 35459768 - 35459575
Alignment:
| Q |
64 |
gtgttgaattttagaattcttacctctcaagaacaaaccatcaggtgatgaaataggaacctccatgaaatgaggatgttcaagctgtctattcctgcaa |
163 |
Q |
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| T |
35459768 |
gtgttgaattttagaattcttacctctcaagaacaaaccatcaggtgatgaaataggaacctccatgaaatgaggatgttcaagctgtctattcctgcaa |
35459669 |
T |
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| Q |
164 |
agatagtaaacaacaggaaccttcctattcttgtaatactttggaggcttttccttccatactttggacctctcaggactcaattgctgcctat |
257 |
Q |
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| T |
35459668 |
agatagtaaacaacaggaaccttcctattcttgtaatactttggaggcttttccttccatactttggacctctcaggactcaattgctgcctat |
35459575 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 84 - 187
Target Start/End: Original strand, 20983186 - 20983289
Alignment:
| Q |
84 |
tacctctcaagaacaaaccatcaggtgatgaaataggaacctccatgaaatgaggatgttcaagctgtctattcctgcaaagatagtaaacaacaggaac |
183 |
Q |
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||||||||||| | || ||||| || || |||| ||||||||||||||||||||||||||||| || ||||| || |||||||| |||| ||||| || |
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| T |
20983186 |
tacctctcaagtataacccatctggagaagaaagtggaacctccatgaaatgaggatgttcaagttgcctatttctacaaagataataaatcacaggcac |
20983285 |
T |
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| Q |
184 |
cttc |
187 |
Q |
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|||| |
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| T |
20983286 |
cttc |
20983289 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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