View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12237_high_1 (Length: 388)
Name: NF12237_high_1
Description: NF12237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12237_high_1 |
 | |
|
| [»] scaffold0055 (7 HSPs) |
| | |
|
| [»] scaffold0052 (9 HSPs) |
| | |
|
| [»] scaffold0021 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0055 (Bit Score: 358; Significance: 0; HSPs: 7)
Name: scaffold0055
Description:
Target: scaffold0055; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 19 - 376
Target Start/End: Complemental strand, 51738 - 51381
Alignment:
| Q |
19 |
gaggtagtgacaataaataacaataccgggctcattgagtctggtaattggaatgagtacaatctaaatcccttaacgaggatccattggagggcaagtc |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51738 |
gaggtagtgacaataaataacaataccgggctcattgagtctggtaattggaatgagtacaatctaaatcccttaacgaggatccattggagggcaagtc |
51639 |
T |
|
| Q |
119 |
tggtgccagcagccgcggtaattccagctccaatagcgtatatttaagttgttgcagttaaaaagctcgtagttggaccttgggttgggtcgatcggtcc |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51638 |
tggtgccagcagccgcggtaattccagctccaatagcgtatatttaagttgttgcagttaaaaagctcgtagttggaccttgggttgggtcgatcggtcc |
51539 |
T |
|
| Q |
219 |
gcctatggtgtgcaccggttggctcgtcccttctgccggcgatgcgctcctggccttaattggccgggtcgtgcctccggcgctgttactttgaagaaat |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51538 |
gcctatggtgtgcaccggttggctcgtcccttctgccggcgatgcgctcctggccttaattggccgggtcgtgcctccggcgctgttactttgaagaaat |
51439 |
T |
|
| Q |
319 |
tagagtgctcaaagcaagcctacgctctggatacattagcatgggataacaccacagg |
376 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51438 |
tagagtgctcaaagcaagcctacgctctggatacattagcatgggataacaccacagg |
51381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0055; HSP #2
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 19 - 376
Target Start/End: Complemental strand, 67273 - 66916
Alignment:
| Q |
19 |
gaggtagtgacaataaataacaataccgggctcattgagtctggtaattggaatgagtacaatctaaatcccttaacgaggatccattggagggcaagtc |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
67273 |
gaggtagtgacaataaataacaataccgggctcattgagtctggtaattggaatgagtacaatctaaatcccttaacgaggatccattggagggcaagtc |
67174 |
T |
|
| Q |
119 |
tggtgccagcagccgcggtaattccagctccaatagcgtatatttaagttgttgcagttaaaaagctcgtagttggaccttgggttgggtcgatcggtcc |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
67173 |
tggtgccagcagccgcggtaattccagctccaatagcgtatatttaagttgttgcagttaaaaagctcgtagttggaccttgggttgggtcgatcggtcc |
67074 |
T |
|
| Q |
219 |
gcctatggtgtgcaccggttggctcgtcccttctgccggcgatgcgctcctggccttaattggccgggtcgtgcctccggcgctgttactttgaagaaat |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
67073 |
gcctatggtgtgcaccggttggctcgtcccttctgccggcgatgcgctcctggccttaattggccgggtcgtgcctccggcgctgttactttgaagaaat |
66974 |
T |
|
| Q |
319 |
tagagtgctcaaagcaagcctacgctctggatacattagcatgggataacaccacagg |
376 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
66973 |
tagagtgctcaaagcaagcctacgctctggatacattagcatgggataacaccacagg |
66916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0055; HSP #3
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 19 - 376
Target Start/End: Complemental strand, 70193 - 69836
Alignment:
| Q |
19 |
gaggtagtgacaataaataacaataccgggctcattgagtctggtaattggaatgagtacaatctaaatcccttaacgaggatccattggagggcaagtc |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
70193 |
gaggtagtgacaataaataacaataccgggctcattgagtctggtaattggaatgagtacaatctaaatcccttaacgaggatccattggagggcaagtc |
70094 |
T |
|
| Q |
119 |
tggtgccagcagccgcggtaattccagctccaatagcgtatatttaagttgttgcagttaaaaagctcgtagttggaccttgggttgggtcgatcggtcc |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
70093 |
tggtgccagcagccgcggtaattccagctccaatagcgtatatttaagttgttgcagttaaaaagctcgtagttggaccttgggttgggtcgatcggtcc |
69994 |
T |
|
| Q |
219 |
gcctatggtgtgcaccggttggctcgtcccttctgccggcgatgcgctcctggccttaattggccgggtcgtgcctccggcgctgttactttgaagaaat |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
69993 |
gcctatggtgtgcaccggttggctcgtcccttctgccggcgatgcgctcctggccttaattggccgggtcgtgcctccggcgctgttactttgaagaaat |
69894 |
T |
|
| Q |
319 |
tagagtgctcaaagcaagcctacgctctggatacattagcatgggataacaccacagg |
376 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
69893 |
tagagtgctcaaagcaagcctacgctctggatacattagcatgggataacaccacagg |
69836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0055; HSP #4
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 19 - 374
Target Start/End: Complemental strand, 42490 - 42135
Alignment:
| Q |
19 |
gaggtagtgacaataaataacaataccgggctcattgagtctggtaattggaatgagtacaatctaaatcccttaacgaggatccattggagggcaagtc |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42490 |
gaggtagtgacaataaataacaataccgggctcattgagtctggtaattggaatgagtacaatctaaatcccttaacgaggatccattggagggcaagtc |
42391 |
T |
|
| Q |
119 |
tggtgccagcagccgcggtaattccagctccaatagcgtatatttaagttgttgcagttaaaaagctcgtagttggaccttgggttgggtcgatcggtcc |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42390 |
tggtgccagcagccgcggtaattccagctccaatagcgtatatttaagttgttgcagttaaaaagctcgtagttggaccttgggttgggtcgatcggtcc |
42291 |
T |
|
| Q |
219 |
gcctatggtgtgcaccggttggctcgtcccttctgccggcgatgcgctcctggccttaattggccgggtcgtgcctccggcgctgttactttgaagaaat |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42290 |
gcctatggtgtgcaccggttggctcgtcccttctgccggcgatgcgctcctggccttaattggccgggtcgtgcctccggcgctgttactttgaagaaat |
42191 |
T |
|
| Q |
319 |
tagagtgctcaaagcaagcctacgctctggatacattagcatgggataacaccaca |
374 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42190 |
tagagtgctcaaagcaagcctacgctctggatacattagcatgggataacaccaca |
42135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0055; HSP #5
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 19 - 376
Target Start/End: Original strand, 4031 - 4388
Alignment:
| Q |
19 |
gaggtagtgacaataaataacaataccgggctcattgagtctggtaattggaatgagtacaatctaaatcccttaacgaggatccattggagggcaagtc |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
4031 |
gaggtagtgacaataaataacaataccgggctcattgagtctggtaattggaatgagtacaatctaaatcccttaatgaggatccattggagggcaagtc |
4130 |
T |
|
| Q |
119 |
tggtgccagcagccgcggtaattccagctccaatagcgtatatttaagttgttgcagttaaaaagctcgtagttggaccttgggttgggtcgatcggtcc |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4131 |
tggtgccagcagccgcggtaattccagctccaatagcgtatatttaagttgttgcagttaaaaagctcgtagttggaccttgggttgggtcgatcggtcc |
4230 |
T |
|
| Q |
219 |
gcctatggtgtgcaccggttggctcgtcccttctgccggcgatgcgctcctggccttaattggccgggtcgtgcctccggcgctgttactttgaagaaat |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4231 |
gcctatggtgtgcaccggttggctcgtcccttctgccggcgatgcgctcctggccttaattggccgggtcgtgcctccggcgctgttactttgaagaaat |
4330 |
T |
|
| Q |
319 |
tagagtgctcaaagcaagcctacgctctggatacattagcatgggataacaccacagg |
376 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4331 |
tagagtgctcaaagcaagcctacgctctggatacattagcatgggataacaccacagg |
4388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0055; HSP #6
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 19 - 374
Target Start/End: Complemental strand, 33182 - 32827
Alignment:
| Q |
19 |
gaggtagtgacaataaataacaataccgggctcattgagtctggtaattggaatgagtacaatctaaatcccttaacgaggatccattggagggcaagtc |
118 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33182 |
gaggtagtgacaataaataacaatatcgggctcattgagtctggtaattggaatgagtacaatctaaatcccttaacgaggatccattggagggcaagtc |
33083 |
T |
|
| Q |
119 |
tggtgccagcagccgcggtaattccagctccaatagcgtatatttaagttgttgcagttaaaaagctcgtagttggaccttgggttgggtcgatcggtcc |
218 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33082 |
tggtgccagctgccgcggtaattccagctccaatagcgtatatttaagttgttgcagttaaaaagctcgtagttggaccttgggttgggtcgatcggtcc |
32983 |
T |
|
| Q |
219 |
gcctatggtgtgcaccggttggctcgtcccttctgccggcgatgcgctcctggccttaattggccgggtcgtgcctccggcgctgttactttgaagaaat |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32982 |
gcctatggtgtgcaccggttggctcgtcccttctgccggcgatgcgctcctggccttaattggccgggtcgtgcctccggcgctgttactttgaagaaat |
32883 |
T |
|
| Q |
319 |
tagagtgctcaaagcaagcctacgctctggatacattagcatgggataacaccaca |
374 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
32882 |
tagagtgctcaaagcaagcctacgctctggatacattaacatgggataacaccaca |
32827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0055; HSP #7
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 166 - 376
Target Start/End: Complemental strand, 80592 - 80382
Alignment:
| Q |
166 |
gttgttgcagttaaaaagctcgtagttggaccttgggttgggtcgatcggtccgcctatggtgtgcaccggttggctcgtcccttctgccggcgatgcgc |
265 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
80592 |
gttgttgcagttaaaaagctcgtagttggaccttgggttgggtcgatcggtccgcctatggtgtgcactggttggctcgtcccttctgccggcgatgcgc |
80493 |
T |
|
| Q |
266 |
tcctggccttaattggccgggtcgtgcctccggcgctgttactttgaagaaattagagtgctcaaagcaagcctacgctctggatacattagcatgggat |
365 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
80492 |
tcctggccttaattggccgggtcgtgcctccggcgctgttactttgaagaaattagagtgctcaaagcaagcctacgctctggatacattagcatgggat |
80393 |
T |
|
| Q |
366 |
aacaccacagg |
376 |
Q |
| |
|
||||||||||| |
|
|
| T |
80392 |
aacaccacagg |
80382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0052 (Bit Score: 358; Significance: 0; HSPs: 9)
Name: scaffold0052
Description:
Target: scaffold0052; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 19 - 376
Target Start/End: Complemental strand, 28037 - 27680
Alignment:
| Q |
19 |
gaggtagtgacaataaataacaataccgggctcattgagtctggtaattggaatgagtacaatctaaatcccttaacgaggatccattggagggcaagtc |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28037 |
gaggtagtgacaataaataacaataccgggctcattgagtctggtaattggaatgagtacaatctaaatcccttaacgaggatccattggagggcaagtc |
27938 |
T |
|
| Q |
119 |
tggtgccagcagccgcggtaattccagctccaatagcgtatatttaagttgttgcagttaaaaagctcgtagttggaccttgggttgggtcgatcggtcc |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27937 |
tggtgccagcagccgcggtaattccagctccaatagcgtatatttaagttgttgcagttaaaaagctcgtagttggaccttgggttgggtcgatcggtcc |
27838 |
T |
|
| Q |
219 |
gcctatggtgtgcaccggttggctcgtcccttctgccggcgatgcgctcctggccttaattggccgggtcgtgcctccggcgctgttactttgaagaaat |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27837 |
gcctatggtgtgcaccggttggctcgtcccttctgccggcgatgcgctcctggccttaattggccgggtcgtgcctccggcgctgttactttgaagaaat |
27738 |
T |
|
| Q |
319 |
tagagtgctcaaagcaagcctacgctctggatacattagcatgggataacaccacagg |
376 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27737 |
tagagtgctcaaagcaagcctacgctctggatacattagcatgggataacaccacagg |
27680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0052; HSP #2
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 19 - 376
Target Start/End: Complemental strand, 48645 - 48288
Alignment:
| Q |
19 |
gaggtagtgacaataaataacaataccgggctcattgagtctggtaattggaatgagtacaatctaaatcccttaacgaggatccattggagggcaagtc |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48645 |
gaggtagtgacaataaataacaataccgggctcattgagtctggtaattggaatgagtacaatctaaatcccttaacgaggatccattggagggcaagtc |
48546 |
T |
|
| Q |
119 |
tggtgccagcagccgcggtaattccagctccaatagcgtatatttaagttgttgcagttaaaaagctcgtagttggaccttgggttgggtcgatcggtcc |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48545 |
tggtgccagcagccgcggtaattccagctccaatagcgtatatttaagttgttgcagttaaaaagctcgtagttggaccttgggttgggtcgatcggtcc |
48446 |
T |
|
| Q |
219 |
gcctatggtgtgcaccggttggctcgtcccttctgccggcgatgcgctcctggccttaattggccgggtcgtgcctccggcgctgttactttgaagaaat |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48445 |
gcctatggtgtgcaccggttggctcgtcccttctgccggcgatgcgctcctggccttaattggccgggtcgtgcctccggcgctgttactttgaagaaat |
48346 |
T |
|
| Q |
319 |
tagagtgctcaaagcaagcctacgctctggatacattagcatgggataacaccacagg |
376 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48345 |
tagagtgctcaaagcaagcctacgctctggatacattagcatgggataacaccacagg |
48288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0052; HSP #3
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 19 - 374
Target Start/End: Complemental strand, 26263 - 25908
Alignment:
| Q |
19 |
gaggtagtgacaataaataacaataccgggctcattgagtctggtaattggaatgagtacaatctaaatcccttaacgaggatccattggagggcaagtc |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26263 |
gaggtagtgacaataaataacaataccgggctcattgagtctggtaattggaatgagtacaatctaaatcccttaacgaggatccattggagggcaagtc |
26164 |
T |
|
| Q |
119 |
tggtgccagcagccgcggtaattccagctccaatagcgtatatttaagttgttgcagttaaaaagctcgtagttggaccttgggttgggtcgatcggtcc |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26163 |
tggtgccagcagccgcggtaattccagctccaatagcgtatatttaagttgttgcagttaaaaagctcgtagttggaccttgggttgggtcgatcggtcc |
26064 |
T |
|
| Q |
219 |
gcctatggtgtgcaccggttggctcgtcccttctgccggcgatgcgctcctggccttaattggccgggtcgtgcctccggcgctgttactttgaagaaat |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26063 |
gcctatggtgtgcaccggttggctcgtcccttctgccggcgatgcgctcctggccttaattggccgggtcgtgcctccggcgctgttactttgaagaaat |
25964 |
T |
|
| Q |
319 |
tagagtgctcaaagcaagcctacgctctggatacattagcatgggataacaccaca |
374 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25963 |
tagagtgctcaaagcaagcctacgctctggatacattagcatgggataacaccaca |
25908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0052; HSP #4
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 19 - 376
Target Start/End: Complemental strand, 51237 - 50880
Alignment:
| Q |
19 |
gaggtagtgacaataaataacaataccgggctcattgagtctggtaattggaatgagtacaatctaaatcccttaacgaggatccattggagggcaagtc |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51237 |
gaggtagtgacaataaataacaataccgggctcattgagtctggtaattggaatgagtacaatctaaatcccttaacgaggatccattggagggcaagtc |
51138 |
T |
|
| Q |
119 |
tggtgccagcagccgcggtaattccagctccaatagcgtatatttaagttgttgcagttaaaaagctcgtagttggaccttgggttgggtcgatcggtcc |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51137 |
tggtgccagcagccgcggtaattccagctccaatagcgtatatttaagttgttgcagttaaaaagctcgtagttggaccttgggttgggtcgatcggtcc |
51038 |
T |
|
| Q |
219 |
gcctatggtgtgcaccggttggctcgtcccttctgccggcgatgcgctcctggccttaattggccgggtcgtgcctccggcgctgttactttgaagaaat |
318 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51037 |
gcctatggtgtgcactggttggctcgtcccttctgccggcgatgcgctcctggccttaattggccgggtcgtgcctccggcgctgttactttgaagaaat |
50938 |
T |
|
| Q |
319 |
tagagtgctcaaagcaagcctacgctctggatacattagcatgggataacaccacagg |
376 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50937 |
tagagtgctcaaagcaagcctacgctctggatacattagcatgggataacaccacagg |
50880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0052; HSP #5
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 19 - 376
Target Start/End: Complemental strand, 80504 - 80147
Alignment:
| Q |
19 |
gaggtagtgacaataaataacaataccgggctcattgagtctggtaattggaatgagtacaatctaaatcccttaacgaggatccattggagggcaagtc |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
80504 |
gaggtagtgacaataaataacaataccgggctcattgagtctggtaattggaatgagtacaatctaaatcccttaatgaggatccattggagggcaagtc |
80405 |
T |
|
| Q |
119 |
tggtgccagcagccgcggtaattccagctccaatagcgtatatttaagttgttgcagttaaaaagctcgtagttggaccttgggttgggtcgatcggtcc |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
80404 |
tggtgccagcagccgcggtaattccagctccaatagcgtatatttaagttgttgcagttaaaaagctcgtagttggaccttgggttgggtcgatcggtcc |
80305 |
T |
|
| Q |
219 |
gcctatggtgtgcaccggttggctcgtcccttctgccggcgatgcgctcctggccttaattggccgggtcgtgcctccggcgctgttactttgaagaaat |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
80304 |
gcctatggtgtgcaccggttggctcgtcccttctgccggcgatgcgctcctggccttaattggccgggtcgtgcctccggcgctgttactttgaagaaat |
80205 |
T |
|
| Q |
319 |
tagagtgctcaaagcaagcctacgctctggatacattagcatgggataacaccacagg |
376 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
80204 |
tagagtgctcaaagcaagcctacgctctggatacattagcatgggataacaccacagg |
80147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0052; HSP #6
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 19 - 374
Target Start/End: Original strand, 62883 - 63238
Alignment:
| Q |
19 |
gaggtagtgacaataaataacaataccgggctcattgagtctggtaattggaatgagtacaatctaaatcccttaacgaggatccattggagggcaagtc |
118 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
62883 |
gaggtagtgacaataaataacaatatcgggctcattgagtctggtaattggaatgagtacaatctaaatcccttaacgaggatccattggagggcaagtc |
62982 |
T |
|
| Q |
119 |
tggtgccagcagccgcggtaattccagctccaatagcgtatatttaagttgttgcagttaaaaagctcgtagttggaccttgggttgggtcgatcggtcc |
218 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
62983 |
tggtgccagctgccgcggtaattccagctccaatagcgtatatttaagttgttgcagttaaaaagctcgtagttggaccttgggttgggtcgatcggtcc |
63082 |
T |
|
| Q |
219 |
gcctatggtgtgcaccggttggctcgtcccttctgccggcgatgcgctcctggccttaattggccgggtcgtgcctccggcgctgttactttgaagaaat |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
63083 |
gcctatggtgtgcaccggttggctcgtcccttctgccggcgatgcgctcctggccttaattggccgggtcgtgcctccggcgctgttactttgaagaaat |
63182 |
T |
|
| Q |
319 |
tagagtgctcaaagcaagcctacgctctggatacattagcatgggataacaccaca |
374 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
63183 |
tagagtgctcaaagcaagcctacgctctggatacattaacatgggataacaccaca |
63238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0052; HSP #7
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 79 - 376
Target Start/End: Complemental strand, 7033 - 6736
Alignment:
| Q |
79 |
aatctaaatcccttaacgaggatccattggagggcaagtctggtgccagcagccgcggtaattccagctccaatagcgtatatttaagttgttgcagtta |
178 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7033 |
aatctaaatcccttaacgaggatccattggagggcaagtctggtgccagcagccgcggtaattccagctccaatagcgtatatttaagttgttgcagtta |
6934 |
T |
|
| Q |
179 |
aaaagctcgtagttggaccttgggttgggtcgatcggtccgcctatggtgtgcaccggttggctcgtcccttctgccggcgatgcgctcctggccttaat |
278 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6933 |
aaaagctcgtagttggaccttgggttgggtcgatcggtccgcctatggtgtgcaccggttggctcgtcccttctgccggcgatgcgctcctggccttaat |
6834 |
T |
|
| Q |
279 |
tggccgggtcgtgcctccggcgctgttactttgaagaaattagagtgctcaaagcaagcctacgctctggatacattagcatgggataacaccacagg |
376 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6833 |
tggccgggtcgtgcctccggcgctgttactttgaagaaattagagtgctcaaagcaagcctacgctctggatacattagcatgggataacaccacagg |
6736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0052; HSP #8
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 19 - 248
Target Start/End: Complemental strand, 18765 - 18535
Alignment:
| Q |
19 |
gaggtagtgacaataaataacaataccgggctcattgagtctggtaattggaatgagtacaatctaaatcccttaacgaggatccattggagggcaagtc |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18765 |
gaggtagtgacaataaataacaataccgggctcattgagtctggtaattggaatgagtacaatctaaatcccttaacgaggatccattggagggcaagtc |
18666 |
T |
|
| Q |
119 |
tggtgccagcagccgcggtaattccagctccaatagcgtatatttaagttgttgcagttaaaaagctcgtagttggaccttgggttgggtcgatcggtcc |
218 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| |
|
|
| T |
18665 |
tggtgccagcagccgcggtcattccagctccaatagcgtatatgtaagttgttgcagttaaaaagctagtagttggacattgggttgggtcgatcggtcc |
18566 |
T |
|
| Q |
219 |
gcctatg-gtgtgcaccggttggctcgtccc |
248 |
Q |
| |
|
||||||| |||||||||||| |||| ||||| |
|
|
| T |
18565 |
gcctatgagtgtgcaccggtcggcttgtccc |
18535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0052; HSP #9
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 19 - 136
Target Start/End: Complemental strand, 4285 - 4168
Alignment:
| Q |
19 |
gaggtagtgacaataaataacaataccgggctcattgagtctggtaattggaatgagtacaatctaaatcccttaacgaggatccattggagggcaagtc |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4285 |
gaggtagtgacaataaataacaataccgggctcattgagtctggtaattggaatgagtacaatctaaatcccttaacgaggatccattggagggcaagtc |
4186 |
T |
|
| Q |
119 |
tggtgccagcagccgcgg |
136 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
4185 |
tggtgccagcagccgcgg |
4168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0021 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: scaffold0021
Description:
Target: scaffold0021; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 19 - 376
Target Start/End: Complemental strand, 46907 - 46550
Alignment:
| Q |
19 |
gaggtagtgacaataaataacaataccgggctcattgagtctggtaattggaatgagtacaatctaaatcccttaacgaggatccattggagggcaagtc |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46907 |
gaggtagtgacaataaataacaataccgggctcattgagtctggtaattggaatgagtacaatctaaatcccttaacgaggatccattggagggcaagtc |
46808 |
T |
|
| Q |
119 |
tggtgccagcagccgcggtaattccagctccaatagcgtatatttaagttgttgcagttaaaaagctcgtagttggaccttgggttgggtcgatcggtcc |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46807 |
tggtgccagcagccgcggtaattccagctccaatagcgtatatttaagttgttgcagttaaaaagctcgtagttggaccttgggttgggtcgatcggtcc |
46708 |
T |
|
| Q |
219 |
gcctatggtgtgcaccggttggctcgtcccttctgccggcgatgcgctcctggccttaattggccgggtcgtgcctccggcgctgttactttgaagaaat |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46707 |
gcctatggtgtgcaccggttggctcgtcccttctgccggcgatgcgctcctggccttaattggccgggtcgtgcctccggcgctgttactttgaagaaat |
46608 |
T |
|
| Q |
319 |
tagagtgctcaaagcaagcctacgctctggatacattagcatgggataacaccacagg |
376 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46607 |
tagagtgctcaaagcaagcctacgctctggatacattagcatgggataacaccacagg |
46550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 96 - 347
Target Start/End: Original strand, 13700809 - 13701060
Alignment:
| Q |
96 |
gaggatccattggagggcaagtctggtgccagcagccgcggtaattccagctccaatagcgtatatttaagttgttgcagttaaaaagctcgtagttgga |
195 |
Q |
| |
|
|||| ||||||||||| |||||||||||| |||||||||| ||||| |||||||||||||||||||||||||||||| |||||||||||| ||||||||| |
|
|
| T |
13700809 |
gaggctccattggaggacaagtctggtgctagcagccgcgataattacagctccaatagcgtatatttaagttgttgtagttaaaaagcttgtagttgga |
13700908 |
T |
|
| Q |
196 |
ccttgggttgggtcgatcggtccgcctatggtgtgcaccggttggctcgtcccttctgccggcgatgcgctcctggccttaattggccgggtcgtgcctc |
295 |
Q |
| |
|
||| ||||| |||||||||||||||||||||| || |||| ||| ||||||||||||||||||||||||||| |||||||||| ||||||||||||||| |
|
|
| T |
13700909 |
cctcgggttaggtcgatcggtccgcctatggtatgtaccgattgactcgtcccttctgccggcgatgcgctctaggccttaatttgccgggtcgtgcctc |
13701008 |
T |
|
| Q |
296 |
cggcgctgttactttgaagaaattagagtgctcaaagcaagcctacgctctg |
347 |
Q |
| |
|
| |||||||||||| |||||||||||||||||||||||||||||| ||||| |
|
|
| T |
13701009 |
tgacgctgttactttaaagaaattagagtgctcaaagcaagcctacactctg |
13701060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 25 - 257
Target Start/End: Original strand, 8125518 - 8125751
Alignment:
| Q |
25 |
gtgacaataaataacaataccgggctcattgagtctggtaattggaatgagtacaatctaaatcccttaacgaggatccattggagggcaagtctggtgc |
124 |
Q |
| |
|
|||| |||||||||||||| | |||||||||||||||||||| |||||||||||| ||||| | ||||||||||| |||| ||| || | ||||| |
|
|
| T |
8125518 |
gtgataataaataacaatagtagactcattgagtctggtaattgaaatgagtacaatataaattctttaacgaggatttattgaaggataaatttggtgt |
8125617 |
T |
|
| Q |
125 |
cagcagccgcggtaattccagctccaatagcgtatatttaagttgttgcagttaaaaagctcgtagttggaccttgggttgggtcgatcggtccgcctat |
224 |
Q |
| |
|
||||||| ||||||||| |||| ||||||||||||||||| |||||||| |||||||||||||||||| || ||| ||| | | ||||| | || |||| |
|
|
| T |
8125618 |
cagcagctgcggtaattttagcttcaatagcgtatatttaaattgttgcaattaaaaagctcgtagttgtactttgagttagattgatcgattcgtctat |
8125717 |
T |
|
| Q |
225 |
ggtgtgcacc-ggttggctcgtcccttctgccgg |
257 |
Q |
| |
|
||||||||| ||||||||| ||||||||||||| |
|
|
| T |
8125718 |
agtgtgcaccgggttggctcatcccttctgccgg |
8125751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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