View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12237_high_2 (Length: 368)
Name: NF12237_high_2
Description: NF12237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12237_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 48 - 351
Target Start/End: Complemental strand, 32040588 - 32040285
Alignment:
| Q |
48 |
ttaacgtacctgaattctgacgtaatccgtacgattccaacagaatgcgtttccaagcatttggtcaatcgtctcggaaacgccgtcaagaacaatgtca |
147 |
Q |
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| T |
32040588 |
ttaacgtacctgaattctgacgtaatccgtacgattccaacagaatgcgtttccaagcatttggtcaatcgtctcggaaacgccgtcaagaacaatgtca |
32040489 |
T |
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| Q |
148 |
accattaacggcgttgagcacgtgcggttttcgttctcacgtgtcttcgaattcgacgatccgtttcccaatgaaagaaccaaaagatcctccacgccgt |
247 |
Q |
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| T |
32040488 |
accattaacggcgttgagcacgtgcggttttcgttctcacgtgtcttcgaattcgacgatccgtttcccaatgaaagaaccaaaagatcctccacgccgt |
32040389 |
T |
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| Q |
248 |
tcaccgttggaaaatcacgtttgttgtgtagaacatgcgtgactgcggcggcggtaggattgttcatgactaaaccaccgtctacggcggagcaagaggt |
347 |
Q |
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| T |
32040388 |
tcaccgttggaaaatcacgtttgttgtgtagaacatgcgtgactgcggcggcggtaggattgttcatgactaaaccaccgtctacggcggagcaagaggt |
32040289 |
T |
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| Q |
348 |
tttt |
351 |
Q |
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|||| |
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| T |
32040288 |
tttt |
32040285 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 259 - 351
Target Start/End: Original strand, 37936531 - 37936623
Alignment:
| Q |
259 |
aaatcacgtttgttgtgtagaacatgcgtgactgcggcggcggtaggattgttcatgactaaaccaccgtctacggcggagcaagaggttttt |
351 |
Q |
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| T |
37936531 |
aaatcacgcttgttatgaagaacatgcgtaacagccgctgccgccggattgttcatcaccaaaccaccgtccacggctgagcaagaggttttt |
37936623 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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