View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12237_low_3 (Length: 252)
Name: NF12237_low_3
Description: NF12237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12237_low_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 14 - 235
Target Start/End: Original strand, 27422280 - 27422501
Alignment:
| Q |
14 |
agagtagtgtataaatagttgctaagggactctacaaaccaattatccaatgaaagtattttgatgagctgtgatagggcctagtaagggacaagagatc |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
27422280 |
agagtagtgtataaatagttgctaagggactctacaaaccaattagccaatgaaagtattttgatgagctgtgatagggcctagtgagggacaagagatc |
27422379 |
T |
|
| Q |
114 |
acatggtattgtcttatagaagtcattttcaaggattagatgaagttaaatggaagaacatgcaaataccccactttgtaacacaaaggaaaaattaaag |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27422380 |
acatggtattgtcttatagaagtcattttcaaggattagatgaagttaaatggaagaacatgcaaataccccactttgtaacacaaaggaaaaattaaag |
27422479 |
T |
|
| Q |
214 |
acagtggattgatgaaagaaac |
235 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
27422480 |
acagtggattgatgaaagaaac |
27422501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 20 - 236
Target Start/End: Original strand, 27414640 - 27414861
Alignment:
| Q |
20 |
gtgtataaatagttgctaagggactctacaaac-caattatccaatgaaagtattttgatgagctgtgatagggcctagtaagggacaagagatcacatg |
118 |
Q |
| |
|
||||||| |||||||| ||||||||||||||| |||| | |||||| ||| |||||||||||||||||||||||||||| ||||||||| ||||||||| |
|
|
| T |
27414640 |
gtgtatatatagttgccaagggactctacaaaatcaatcagccaatggaagcattttgatgagctgtgatagggcctagtgagggacaagggatcacatg |
27414739 |
T |
|
| Q |
119 |
gtattgtcttatagaagtcattttc-aaggattagatgaagttaaatggaagaacatgcaaataccccactttgtaacaca---aaggaaaaattaaaga |
214 |
Q |
| |
|
|||||||| |||||||||||||||| || ||||||||||| |||||||||||||||||| |||||| ||| ||||||||| |||||||||||||||| |
|
|
| T |
27414740 |
gtattgtcctatagaagtcattttcaaactattagatgaagctaaatggaagaacatgcacataccctactctgtaacacaactaaggaaaaattaaaga |
27414839 |
T |
|
| Q |
215 |
cagtggattgatgaaagaaact |
236 |
Q |
| |
|
|||||||||| ||||||||||| |
|
|
| T |
27414840 |
cagtggattggtgaaagaaact |
27414861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 18 - 235
Target Start/End: Original strand, 27424851 - 27425082
Alignment:
| Q |
18 |
tagtgtataaatagttgctaagggactctacaaac-caattatccaatgaaagtattttgatgagctgtgatagggcctagtaagggacaagagatcaca |
116 |
Q |
| |
|
||||||||| |||| ||||||| |||||||||| |||||| ||||||||||||||||| ||||||||||||||||||||| | ||||||| ||||||| |
|
|
| T |
27424851 |
tagtgtatatatagaagctaaggaactctacaaaatcaattagccaatgaaagtattttggtgagctgtgatagggcctagtgacggacaagggatcaca |
27424950 |
T |
|
| Q |
117 |
tggtattgt--------cttatagaagtcattttcaaggatta--gatgaagttaaatggaagaacatgcaaataccccactttgtaacaca---aagga |
203 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| | ||| |
|
|
| T |
27424951 |
tggtattgtactattgtcttatagaagtcattttcaaggattatagatgaagttaaatggaagaacattcaaataccccactttgtaacacaactatgga |
27425050 |
T |
|
| Q |
204 |
aaaattaaagacagtggattgatgaaagaaac |
235 |
Q |
| |
|
||||||||||||||||||||| |||||||||| |
|
|
| T |
27425051 |
aaaattaaagacagtggattggtgaaagaaac |
27425082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 23 - 192
Target Start/End: Complemental strand, 27567029 - 27566860
Alignment:
| Q |
23 |
tataaatagttgctaagggactctacaaaccaattatccaatgaaagtattttgatgagctgtgatagggcctagtaagggacaagagatcacatggtat |
122 |
Q |
| |
|
|||| |||||||||||||| || ||||||||| ||| ||||||||||| || |||||||||||||||||||||| | |||||| || |||||||||| || |
|
|
| T |
27567029 |
tatatatagttgctaagggcctgtacaaaccacttagccaatgaaagtgttgtgatgagctgtgatagggcctactgagggaccagggatcacatggcat |
27566930 |
T |
|
| Q |
123 |
tgtcttatagaagtcattttcaaggattagatgaagttaaatggaagaacatgcaaataccccactttgt |
192 |
Q |
| |
|
||| | || ||||||||||||||| ||||||||||| |||||||||||||||||| |||||||||||||| |
|
|
| T |
27566929 |
tgtatcatggaagtcattttcaagcattagatgaagataaatggaagaacatgcacataccccactttgt |
27566860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 18 - 182
Target Start/End: Complemental strand, 27571398 - 27571233
Alignment:
| Q |
18 |
tagtgtataaatagttgctaagggactcta-caaaccaattatccaatgaaagtattttgatgagctgtgatagggcctagtaagggacaagagatcaca |
116 |
Q |
| |
|
||||||||| |||||||||||||| ||| | ||||||||||| |||||||| ||||||||||| ||| |||| | ||||| ||| ||||| | ||||| |
|
|
| T |
27571398 |
tagtgtatatatagttgctaagggtctcaaacaaaccaattaaccaatgaatgtattttgatggattgtaatagagtctagttaggtacaagggttcaca |
27571299 |
T |
|
| Q |
117 |
tggtattgtcttatagaagtcattttcaaggattagatgaagttaaatggaagaacatgcaaatac |
182 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||| ||||| |||||||||||||||| |
|
|
| T |
27571298 |
tggtattgtcttatagaggtcattttcaaggattagatgaagctaaatataagaacatgcaaatac |
27571233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 21 - 192
Target Start/End: Original strand, 27419437 - 27419605
Alignment:
| Q |
21 |
tgtataaatagttgctaagggactctacaaaccaattatccaatgaaagtattttgatgagctgtgatagggcctagtaagggacaagagatcacatggt |
120 |
Q |
| |
|
|||||| |||||| ||||||| |||||||||||||||| || |||| ||| |||| ||||||||||||||| | ||| | ||||||| ||||||||||| |
|
|
| T |
27419437 |
tgtatatatagtttctaagggcctctacaaaccaattaatcagtgaatgtaatttggtgagctgtgatagggtcaagtgaaggacaagggatcacatggt |
27419536 |
T |
|
| Q |
121 |
attgtcttatagaagtcattttcaaggattagatgaagttaaatggaagaacatgcaaataccccactttgt |
192 |
Q |
| |
|
|||||| |||| | | |||||||||||||| |||| | ||||||||| |||||| ||||||||| |||| |
|
|
| T |
27419537 |
attgtcctatacatat-tttttcaaggattag--gaagcttaatggaagagcatgcacataccccacattgt |
27419605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University