View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12237_low_4 (Length: 208)
Name: NF12237_low_4
Description: NF12237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12237_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 126; Significance: 4e-65; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 19 - 192
Target Start/End: Complemental strand, 24420891 - 24420719
Alignment:
| Q |
19 |
cctgattccgtaactgggaaaaggaactactcttacatggatgctgttagagttaatcttggtaagtattgacacattataaacttctcactatgtgaaa |
118 |
Q |
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| T |
24420891 |
cctgattcggtaactgggaaaaggaactactcttacatggatgctgttagagttaatcttggtaactata-acacactataaactcttcattatgtagaa |
24420793 |
T |
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| Q |
119 |
aacatagatatattatgattttcatgaactctaccataatagttataacttgaaattggttttcaggtaataag |
192 |
Q |
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| T |
24420792 |
aacatagatatattatgattttcatgaactctaccataatagttataacttgaaagtggttttcaggtaataag |
24420719 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 19 - 191
Target Start/End: Original strand, 24413150 - 24413321
Alignment:
| Q |
19 |
cctgattccgtaactgggaaaaggaactactcttacatggatgctgttagagttaatcttggtaagtattgacacattataaacttctcactatgtgaaa |
118 |
Q |
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| T |
24413150 |
cctgattcggtaactgggaaaaggaactactcttacatggatgctgttagagttaatcttggtaactata-acacattataaactcttcattatgcagaa |
24413248 |
T |
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| Q |
119 |
aacatagatatattatgattttcatgaactctaccataatagttataacttgaaattggttttcaggtaataa |
191 |
Q |
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| T |
24413249 |
aacatagatatattatgattttcatgaactctaccataatagttataacttgaaagtggttttcaggtaataa |
24413321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 83
Target Start/End: Original strand, 24400701 - 24400765
Alignment:
| Q |
19 |
cctgattccgtaactgggaaaaggaactactcttacatggatgctgttagagttaatcttggtaa |
83 |
Q |
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| T |
24400701 |
cctgattctgtaactgggaaaagaaaccactcttttatggatgctgttagagtcaatcttggtaa |
24400765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 19 - 83
Target Start/End: Original strand, 24377858 - 24377922
Alignment:
| Q |
19 |
cctgattccgtaactgggaaaaggaactactcttacatggatgctgttagagttaatcttggtaa |
83 |
Q |
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||||| || |||| ||||||||| |||||||||| ||||||||||||||||| ||||||||||| |
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| T |
24377858 |
cctgactctgtaaatgggaaaagaaactactcttttatggatgctgttagagtcaatcttggtaa |
24377922 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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