View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12238_high_1 (Length: 500)
Name: NF12238_high_1
Description: NF12238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12238_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 468; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 468; E-Value: 0
Query Start/End: Original strand, 6 - 485
Target Start/End: Complemental strand, 1445267 - 1444788
Alignment:
| Q |
6 |
agcagcagagaacaccaaccttattgaactcagatcaaactccgccaccgacggactcttcgccaacgccaaaaccaacggcggaacaaccatcgccacc |
105 |
Q |
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|||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1445267 |
agcaccagacaacaccaaccttattgaactcagatcaaactccgccaccgacggactcttcgccaacgccaaaaccaacggcggaacaaccatcgccacc |
1445168 |
T |
|
| Q |
106 |
gtaaccttatgtttttgtataagaccaagcaaagtcccaatctcaaatttatgcatcaacaaaaccccacttcctgctctcagtgcacacaataacacac |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1445167 |
gtaaccttatgtttttgtataagaccaagcaaagtcccaatctcaaatttatgcatcaacaaaaccccacttcctgctctcagtgcacacaataacacac |
1445068 |
T |
|
| Q |
206 |
tgttgagagaaaatatatgaaacaatggaagaacacaaagaagaacatcttctgttgttaaatgtagatttggattctctccatccacttgttgtgccac |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1445067 |
tgttgagagaaaatatatgaaacaatggaagaacacaaagaagaacatcttctgttgttaaatgtagatttggattctctccatccacttgttgtgccac |
1444968 |
T |
|
| Q |
306 |
acttgttgttaaactcttgtgtgttagaatcactcctttaggtaatcctgttgttcctgaagaaaatggtagcgccaccgcgtcttctggatcgatctcc |
405 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1444967 |
acttgttgttaaactcttgtgtgttagaatcactcctttaggtaatcctgttgttcctgaagaaaatggtagcgccaccgcgtcttctggatcgatctcc |
1444868 |
T |
|
| Q |
406 |
actaccggaatatcctcttcgttcgactcagaaatcatcgaaaaatgtaaacaattcagcggtggttcgtcggttgttat |
485 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
1444867 |
actaccggaatatcctcttcgttcgactcagaaatcaccgaaaaatgtaaacaattcagcggtggttcgtcggttgttat |
1444788 |
T |
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