View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12238_high_2 (Length: 418)
Name: NF12238_high_2
Description: NF12238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12238_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 179; Significance: 2e-96; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 17 - 195
Target Start/End: Complemental strand, 39088743 - 39088565
Alignment:
| Q |
17 |
cacagatgtaaagcatgtggcacatattggattggatggtcctactgaaaatcccccaacctgggtaactctcttaatatattactcaaccttgttaaag |
116 |
Q |
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| T |
39088743 |
cacagatgtaaagcatgtggcacatattggattggatggtcctactgaaaatcccccaacctgggtaactctcttaatatattactcaaccttgttaaag |
39088644 |
T |
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| Q |
117 |
attaattaactacttgaaccaaaaaagattaattagctacttaattattttttgtttctttagtgaacagtaaaaatat |
195 |
Q |
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| T |
39088643 |
attaattaactacttgaaccaaaaaagattaattagctacttaattattttttgtttctttagtgaacagtaaaaatat |
39088565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 248 - 400
Target Start/End: Complemental strand, 39088491 - 39088339
Alignment:
| Q |
248 |
cagatgaacgagtttaaatctaccccaggactttcatcatcagcacctctaaatatgaaccgagatattcattgtaaaagagctgatgattcagaacccc |
347 |
Q |
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| T |
39088491 |
cagatgaacgagtttaaatctaccccaggactttcatcatcagcacctctaaatatgaaccgagatattcattgtaaaagagctgatgattcagaacccc |
39088392 |
T |
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| Q |
348 |
gagtctccttaggtacacgttatgtttcatgcttaatttttgacatacaaaat |
400 |
Q |
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| T |
39088391 |
gaatctccttaggtacgcgttatgtttcatgcttaatttttgacatacaaaat |
39088339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 48
Target Start/End: Original strand, 15587632 - 15587662
Alignment:
| Q |
18 |
acagatgtaaagcatgtggcacatattggat |
48 |
Q |
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| T |
15587632 |
acagatgtaaagcatgtggcacatattggat |
15587662 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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