View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12238_high_7 (Length: 289)
Name: NF12238_high_7
Description: NF12238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12238_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 253; Significance: 1e-141; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 1 - 280
Target Start/End: Original strand, 50243970 - 50244256
Alignment:
| Q |
1 |
acactttccattcttgtacaagaaacggggatttcacaaagtctatggagcatccataatcctaattaacatcacaacatgtcaaaaacacaatatcaaa |
100 |
Q |
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| T |
50243970 |
acactttccattcttgtacaagaaacggggatttcacaaagtctatggagcatccataatcctaattaacatcacaacatgtcaaaaacacaatatcaaa |
50244069 |
T |
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| Q |
101 |
c-------cttaagcaagctaaagttctatcaaatttcttaagaaaaacagccaacacatccttactttgaatttgaaagaaaagaaaccttgaatcctg |
193 |
Q |
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| T |
50244070 |
ccttaaaccttaagcaagctaaagttctatcaaatttctcaagaaaaacagccaacacatccttactttgaatttgaaagaaaagaaaccttgaatcctg |
50244169 |
T |
|
| Q |
194 |
aattcacggcgtccggaaacttcatagagtctgctcttatctttaagagaagctctcaaagcacacaccaaagattgccacaggttc |
280 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
50244170 |
aattcacggcgtccggaaacttcatagagtctgctcttatctttaagagaagctctcaaagcacacaccaaagattgccacatgttc |
50244256 |
T |
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