View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12238_low_11 (Length: 262)
Name: NF12238_low_11
Description: NF12238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12238_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 15 - 246
Target Start/End: Complemental strand, 24378194 - 24377963
Alignment:
| Q |
15 |
aacaacaccgctagcaccaccgctgctaccacacagatttggaatcgaggagaacgagagagtattttaattgttggatttagggttaaatttctgggtt |
114 |
Q |
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| T |
24378194 |
aacaacaccgctagcaccaccgctgccaccacgcagatttggaatcaaggagaacgagagagtattttaattgttggatttggggttaaatttctgggtt |
24378095 |
T |
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| Q |
115 |
tgttcatgtatgaatatgtgttggatttgtgacattcgttttttcttcatgtatgaatttgttttgatggatttggatacaaatttggaattttgtttgt |
214 |
Q |
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| T |
24378094 |
tgttcatgtatgaatctgtgttggatttgcgacaccctttttttcttcatgtatgaatttgtgttgatggatttggatacaaatttggaattttgtttgt |
24377995 |
T |
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| Q |
215 |
tgaaaaagaagaaatttgggggtggaaagtgt |
246 |
Q |
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| T |
24377994 |
tgaaaaagaagaaatttgggggtggaaagtgt |
24377963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 28 - 252
Target Start/End: Original strand, 20102651 - 20102875
Alignment:
| Q |
28 |
gcaccaccgctgctaccacacagatttggaatcgaggagaacgagagagtattttaattgttggatttagggttaaatttctgggtttgttcatgtatga |
127 |
Q |
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| T |
20102651 |
gcaccaccgctgctacctcgcagatttggaatcaaggagaacgagagagtattttaattgttggatttggggttaaatttctgggtttgttcatgtatga |
20102750 |
T |
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| Q |
128 |
atatgtgttggatttgtgacattcgttttttcttcatgtatgaatttgttttgatggatttggatacaaatttggaattttgtttgttgaaaaagaagaa |
227 |
Q |
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| T |
20102751 |
atctgtgttgtatttgcgacaccctttttttcttcatgtatgaatttgtgttgatggatttggatacaaatttggaattttgtttgttgaaaaagaagaa |
20102850 |
T |
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| Q |
228 |
atttgggggtggaaagtgttctgtg |
252 |
Q |
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| T |
20102851 |
atttgggggtggaaagtgttttgtg |
20102875 |
T |
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