View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12238_low_2 (Length: 427)
Name: NF12238_low_2
Description: NF12238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12238_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 196 - 414
Target Start/End: Original strand, 21055962 - 21056180
Alignment:
| Q |
196 |
tatttgtgtatgatcttccaccaaaatacaacaaaaactggcttaaaaacccaagatgcaaaactcatttatttgcttcagaagttgctattcatagagc |
295 |
Q |
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| T |
21055962 |
tatttgtgtatgatcttccaccaaaatacaacaaaaactggcttaaaaacccaagatgcaaaactcatttatttgcttcagaagttgctattcatagagc |
21056061 |
T |
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| Q |
296 |
tttattaacaagtgatgtaagaacttttgacccatatgaagctgattttttctttgtaccagtttacgtttcttgtaacttcagcaccgttaatggcttc |
395 |
Q |
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| T |
21056062 |
tttattaacaagtgatgtaagaacttttgacccatatgaagctgattttttctttgtaccagtttacgtttcttgtaacttcagcaccgttaatggcttc |
21056161 |
T |
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| Q |
396 |
ccagcaattggtcatgcac |
414 |
Q |
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| T |
21056162 |
ccagcaattggtcatgcac |
21056180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 21055767 - 21055812
Alignment:
| Q |
1 |
ttctttggctttctctttctctctatttcttcacttcttacctcat |
46 |
Q |
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| T |
21055767 |
ttctttggctttctctttctctctatttcttcacttcttacctcat |
21055812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 123; Significance: 5e-63; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 236 - 414
Target Start/End: Complemental strand, 12172979 - 12172801
Alignment:
| Q |
236 |
gcttaaaaacccaagatgcaaaactcatttatttgcttcagaagttgctattcatagagctttattaacaagtgatgtaagaacttttgacccatatgaa |
335 |
Q |
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| T |
12172979 |
gcttacaaactcaagatgcaaaactcgtttatttgcttcaaaagttgaaattcatagagctttattaacaagtgatgttagaacttttgacccttacgaa |
12172880 |
T |
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| Q |
336 |
gctgattttttctttgtaccagtttacgtttcttgtaacttcagcaccgttaatggcttcccagcaattggtcatgcac |
414 |
Q |
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| T |
12172879 |
gctgattttttctttgtagcaatttatgtttcttgtaacttcagcactgttaatggcttccctgcaattggtcatgcac |
12172801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 255 - 412
Target Start/End: Complemental strand, 35417290 - 35417133
Alignment:
| Q |
255 |
aaaactcatttatttgcttcagaagttgctattcatagagctttattaacaagtgatgtaagaacttttgacccatatgaagctgattttttctttgtac |
354 |
Q |
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| T |
35417290 |
aaaacacatttgtttgcttcagaagttgctattcacaccgcattgttgaaaagtgatgtgagaacttttgacccttatgaagctgatttcttctttgttc |
35417191 |
T |
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| Q |
355 |
cagtttacgtttcttgtaacttcagcaccgttaatggcttcccagcaattggtcatgc |
412 |
Q |
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| T |
35417190 |
ctgtttatgtttcttgcaacttcagcacagttaatggttttccggcaattggacatgc |
35417133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 35417490 - 35417443
Alignment:
| Q |
1 |
ttctttggctttctctttctctctatttcttcacttcttacctcatca |
48 |
Q |
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| T |
35417490 |
ttctttggttttctctttctctttatttcttcacctcttatctcatca |
35417443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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