View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12238_low_4 (Length: 379)
Name: NF12238_low_4
Description: NF12238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12238_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 22 - 366
Target Start/End: Original strand, 17104448 - 17104796
Alignment:
| Q |
22 |
gtcaggttcttagatacgaggataattttgatgcaacaagcaatgtttccgttcttgtccaaacaactgacaagaagtccatcaccgactatggttcacc |
121 |
Q |
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| T |
17104448 |
gtcaggttcttagatacgaggataattttgatgcaacaagcaatgtttccgttcttgtccaaacaactgacaagaagtccatcaccgactatggttcacc |
17104547 |
T |
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| Q |
122 |
tgaagagttcctatccaaggttttaaaaatctcaacttttttcttcatttgtgcttatactaaaattttgataaaatcattaatatatattttacaaccg |
221 |
Q |
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| T |
17104548 |
tgaagagttcctatccaaggttttaaaaatctcaacttttttcttcatttgtgtttacactaaaattttgataaaatcattaatatatattttacaaccg |
17104647 |
T |
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| Q |
222 |
ttttcgatggaattcaaactcttcccttaatgttacaggaacannnnnnnaccactgagctcacaccttatgaacatatattttattacatattatctgc |
321 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17104648 |
ttttcgatggaattcaaactcttcccttaatgttacaggaacaattttttaccactgagctcacaccttatgaacatatattttattacatattatctgc |
17104747 |
T |
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| Q |
322 |
ctcaacat----tatttgttgatgtagctaatatattaaatcatgtctg |
366 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
17104748 |
ctcaacatacaatatttgttgatgtagctaatatattaaatcatgtctg |
17104796 |
T |
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