View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12238_low_5 (Length: 373)

Name: NF12238_low_5
Description: NF12238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12238_low_5
NF12238_low_5
[»] chr6 (8 HSPs)
chr6 (21-365)||(26478415-26478760)
chr6 (263-329)||(7480236-7480302)
chr6 (207-245)||(9210637-9210675)
chr6 (209-262)||(32650107-32650160)
chr6 (261-293)||(862934-862966)
chr6 (261-293)||(5069935-5069967)
chr6 (207-259)||(9210706-9210758)
chr6 (211-259)||(9692892-9692940)
[»] chr1 (19 HSPs)
chr1 (207-259)||(30692782-30692834)
chr1 (201-259)||(4604917-4604975)
chr1 (261-296)||(49166721-49166756)
chr1 (259-296)||(50266946-50266983)
chr1 (201-260)||(882929-882988)
chr1 (262-296)||(457565-457599)
chr1 (207-257)||(11016670-11016720)
chr1 (262-296)||(24419525-24419559)
chr1 (193-259)||(38636281-38636347)
chr1 (202-259)||(50692089-50692147)
chr1 (263-296)||(457687-457720)
chr1 (193-258)||(4540616-4540681)
chr1 (262-295)||(5346955-5346988)
chr1 (202-259)||(31032521-31032578)
chr1 (202-259)||(42074212-42074269)
chr1 (210-247)||(50267091-50267128)
chr1 (262-294)||(8174089-8174121)
chr1 (264-296)||(8174211-8174243)
chr1 (193-237)||(41944765-41944809)
[»] chr4 (14 HSPs)
chr4 (201-259)||(23614454-23614512)
chr4 (207-247)||(27990367-27990407)
chr4 (209-257)||(32125419-32125467)
chr4 (209-259)||(47493212-47493262)
chr4 (265-296)||(23292357-23292388)
chr4 (207-257)||(33508613-33508663)
chr4 (261-294)||(10065060-10065093)
chr4 (209-258)||(33004250-33004299)
chr4 (261-294)||(38562239-38562272)
chr4 (266-295)||(51267191-51267220)
chr4 (262-295)||(52840261-52840294)
chr4 (209-257)||(20291863-20291911)
chr4 (207-247)||(52280876-52280916)
chr4 (207-259)||(53837506-53837558)
[»] chr7 (9 HSPs)
chr7 (207-259)||(3485901-3485953)
chr7 (207-260)||(7307707-7307760)
chr7 (207-257)||(12810389-12810439)
chr7 (207-257)||(35985269-35985319)
chr7 (207-257)||(36006677-36006727)
chr7 (202-259)||(12423724-12423781)
chr7 (211-247)||(3967796-3967832)
chr7 (209-257)||(29229753-29229800)
chr7 (261-293)||(34670348-34670380)
[»] chr5 (17 HSPs)
chr5 (207-259)||(34445340-34445392)
chr5 (207-259)||(18550986-18551038)
chr5 (97-163)||(985593-985660)
chr5 (207-262)||(5354825-5354880)
chr5 (204-259)||(7882811-7882866)
chr5 (207-264)||(16829212-16829268)
chr5 (262-295)||(28499775-28499808)
chr5 (202-247)||(33366304-33366349)
chr5 (292-329)||(35037051-35037088)
chr5 (202-259)||(40773051-40773108)
chr5 (261-293)||(5865954-5865986)
chr5 (262-294)||(6266253-6266285)
chr5 (262-294)||(8850258-8850290)
chr5 (261-293)||(14751238-14751270)
chr5 (207-259)||(19087856-19087908)
chr5 (209-257)||(28351025-28351073)
chr5 (261-293)||(34445256-34445288)
[»] chr3 (11 HSPs)
chr3 (207-259)||(27786535-27786587)
chr3 (184-238)||(27786442-27786496)
chr3 (123-194)||(27792804-27792872)
chr3 (261-293)||(16867613-16867645)
chr3 (202-258)||(49733626-49733682)
chr3 (204-247)||(26601969-26602012)
chr3 (209-259)||(43597973-43598023)
chr3 (202-264)||(55121178-55121240)
chr3 (192-245)||(26331309-26331362)
chr3 (201-257)||(18093859-18093915)
chr3 (261-293)||(26331329-26331361)
[»] chr2 (12 HSPs)
chr2 (192-259)||(472406-472473)
chr2 (262-296)||(41517478-41517512)
chr2 (202-259)||(472491-472548)
chr2 (192-257)||(30429063-30429128)
chr2 (259-288)||(32516134-32516163)
chr2 (263-296)||(41517356-41517389)
chr2 (261-293)||(9733474-9733506)
chr2 (207-259)||(10172827-10172879)
chr2 (261-293)||(11564996-11565028)
chr2 (261-293)||(12488104-12488136)
chr2 (261-293)||(30429064-30429096)
chr2 (211-247)||(40363232-40363268)
[»] chr8 (11 HSPs)
chr8 (193-259)||(12354446-12354512)
chr8 (209-259)||(30857240-30857290)
chr8 (261-294)||(1784202-1784235)
chr8 (207-259)||(4578267-4578320)
chr8 (207-260)||(9503529-9503582)
chr8 (261-297)||(6590774-6590810)
chr8 (262-290)||(6590897-6590925)
chr8 (202-246)||(12736359-12736403)
chr8 (208-263)||(27988154-27988210)
chr8 (208-263)||(28045456-28045512)
chr8 (207-259)||(30857308-30857360)


Alignment Details
Target: chr6 (Bit Score: 314; Significance: 1e-177; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 21 - 365
Target Start/End: Complemental strand, 26478760 - 26478415
Alignment:
Q  21 gtggcgaaacaaatcttagactatttctgatatcatctttatggaaatagctcatgacatgtcttaaattacttttagcttatttccataa-ctcttcat 119  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||     
T  26478760 gtggcgaaacaaatcttagattatttctgatatcatctttatggaaatagcttatgacatgtcttaaattacttttagcttatttccataaactcttcac 26478661  T
Q  120 gaaagcttatatcaaaaccgtttgaccttagtttatcttttgtttgttaagaaatagtttatacataagcacttactcccgtcggttacatttataagca 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||    
T  26478660 gaaagcttatatcaaaaccgtttgaccttagtttatcttttgtttgttaagaaatagtttatacataagcacttacttccttcggttacatttataagca 26478561  T
Q  220 aaacactactttttaggtttattgaatatctaatgtatttagttttttgcttataaatgtgaccagagggagtatatgataagcgcttcattaaattgtt 319  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26478560 aaacactactttttaggtttattgaatacctaatgtatttagttttttgcttataaatgtgaccagagggagtatatgataagcgcttcattaaattgtt 26478461  T
Q  320 tatccaaacaaagatataacacacttagtcacttaccatctctgct 365  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  26478460 tatccaaacaaagatataacacacttagtcacttaccatctctgct 26478415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 263 - 329
Target Start/End: Original strand, 7480236 - 7480302
Alignment:
Q  263 tttttgcttataaatgtgaccagagggagtatatgataagcgcttcattaaattgtttatccaaaca 329  Q
    ||||||||||||| || | ||||||||||||| | |||||| ||| | ||| |||||||||||||||    
T  7480236 tttttgcttataattgagtccagagggagtatgttataagcacttaactaagttgtttatccaaaca 7480302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 207 - 245
Target Start/End: Original strand, 9210637 - 9210675
Alignment:
Q  207 acatttataagcaaaacactactttttaggtttattgaa 245  Q
    |||||||||||||||||||||||||||| ||| ||||||    
T  9210637 acatttataagcaaaacactactttttaagttcattgaa 9210675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 262
Target Start/End: Original strand, 32650107 - 32650160
Alignment:
Q  209 atttataagcaaaacactactttttaggtttattgaatatctaatgtatttagt 262  Q
    ||||||||||||||||  | ||||||| ||||||||||| ||||| ||||||||    
T  32650107 atttataagcaaaacataattttttagatttattgaatacctaatatatttagt 32650160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 261 - 293
Target Start/End: Original strand, 862934 - 862966
Alignment:
Q  261 gttttttgcttataaatgtgaccagagggagta 293  Q
    ||||||||||||||||||||||| |||||||||    
T  862934 gttttttgcttataaatgtgaccggagggagta 862966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 261 - 293
Target Start/End: Complemental strand, 5069967 - 5069935
Alignment:
Q  261 gttttttgcttataaatgtgaccagagggagta 293  Q
    ||||||||||||||||||||| |||||||||||    
T  5069967 gttttttgcttataaatgtgatcagagggagta 5069935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 207 - 259
Target Start/End: Complemental strand, 9210758 - 9210706
Alignment:
Q  207 acatttataagcaaaacactactttttaggtttattgaatatctaatgtattt 259  Q
    ||||||||||||||||| |||| ||||||||| ||  |||| |||||||||||    
T  9210758 acatttataagcaaaaccctacattttaggttcatgtaatacctaatgtattt 9210706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 211 - 259
Target Start/End: Complemental strand, 9692940 - 9692892
Alignment:
Q  211 ttataagcaaaacactactttttaggtttattgaatatctaatgtattt 259  Q
    ||||||||||||||| ||||||| |||| ||||||||||| || |||||    
T  9692940 ttataagcaaaacacaacttttttggttcattgaatatctgatatattt 9692892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 207 - 259
Target Start/End: Original strand, 30692782 - 30692834
Alignment:
Q  207 acatttataagcaaaacactactttttaggtttattgaatatctaatgtattt 259  Q
    ||||||||||| ||||||| ||||||||||||| |||||||||||||||||||    
T  30692782 acatttataagaaaaacacaactttttaggtttgttgaatatctaatgtattt 30692834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 201 - 259
Target Start/End: Complemental strand, 4604975 - 4604917
Alignment:
Q  201 tcggttacatttataagcaaaacactactttttaggtttattgaatatctaatgtattt 259  Q
    ||||| |||||||||||||||| |  ||||||||||||||||||||| |||||||||||    
T  4604975 tcggtcacatttataagcaaaaaatcactttttaggtttattgaatacctaatgtattt 4604917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 261 - 296
Target Start/End: Original strand, 49166721 - 49166756
Alignment:
Q  261 gttttttgcttataaatgtgaccagagggagtatat 296  Q
    ||||||||||||||||||||||||||||||||||||    
T  49166721 gttttttgcttataaatgtgaccagagggagtatat 49166756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 259 - 296
Target Start/End: Complemental strand, 50266983 - 50266946
Alignment:
Q  259 tagttttttgcttataaatgtgaccagagggagtatat 296  Q
    |||||||||||||||||||||||| |||||||||||||    
T  50266983 tagttttttgcttataaatgtgactagagggagtatat 50266946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 201 - 260
Target Start/End: Original strand, 882929 - 882988
Alignment:
Q  201 tcggttacatttataagcaaaacactactttttaggtttattgaatatctaatgtattta 260  Q
    ||||| ||||||||||| |||| |  |||||||||||| |||||||| ||||||||||||    
T  882929 tcggtcacatttataagtaaaatataactttttaggttcattgaataactaatgtattta 882988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 262 - 296
Target Start/End: Complemental strand, 457599 - 457565
Alignment:
Q  262 ttttttgcttataaatgtgaccagagggagtatat 296  Q
    |||||||||||||||||||||| ||||||||||||    
T  457599 ttttttgcttataaatgtgaccggagggagtatat 457565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 207 - 257
Target Start/End: Complemental strand, 11016720 - 11016670
Alignment:
Q  207 acatttataagcaaaacactactttttaggtttattgaatatctaatgtat 257  Q
    |||||||||| |||||  | ||||||||||||||||||||| |||||||||    
T  11016720 acatttataaacaaaaatcaactttttaggtttattgaataactaatgtat 11016670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 262 - 296
Target Start/End: Complemental strand, 24419559 - 24419525
Alignment:
Q  262 ttttttgcttataaatgtgaccagagggagtatat 296  Q
    |||||||||||||||||||||| ||||||||||||    
T  24419559 ttttttgcttataaatgtgaccggagggagtatat 24419525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 193 - 259
Target Start/End: Complemental strand, 38636347 - 38636281
Alignment:
Q  193 tactcccgtcggttacatttataagcaaaacactactttttaggtttattgaatatctaatgtattt 259  Q
    |||||||  |||| ||||||| |||||||| || ||||||||| || |||||||| |||||||||||    
T  38636347 tactccctccggtcacatttaaaagcaaaaaacaactttttagattgattgaataactaatgtattt 38636281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 202 - 259
Target Start/End: Original strand, 50692089 - 50692147
Alignment:
Q  202 cggttacatttataagcaaaaca-ctactttttaggtttattgaatatctaatgtattt 259  Q
    |||| |||||||||||||||| | |||||||||||||| ||| |||| |||||||||||    
T  50692089 cggtcacatttataagcaaaaaaactactttttaggttcattaaatacctaatgtattt 50692147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 263 - 296
Target Start/End: Original strand, 457687 - 457720
Alignment:
Q  263 tttttgcttataaatgtgaccagagggagtatat 296  Q
    ||||||||||||||||||||| ||||||||||||    
T  457687 tttttgcttataaatgtgaccggagggagtatat 457720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 258
Target Start/End: Original strand, 4540616 - 4540681
Alignment:
Q  193 tactcccgtcggttacatttataagcaaaacactactttttaggtttattgaatatctaatgtatt 258  Q
    |||||||  |||| ||||||||||||||||   |||||| |||||| ||||||||| |||||||||    
T  4540616 tactccctccggtcacatttataagcaaaaatgtactttataggttcattgaatatataatgtatt 4540681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 262 - 295
Target Start/End: Complemental strand, 5346988 - 5346955
Alignment:
Q  262 ttttttgcttataaatgtgaccagagggagtata 295  Q
    ||||||||||||||||||||||||||| ||||||    
T  5346988 ttttttgcttataaatgtgaccagaggaagtata 5346955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 259
Target Start/End: Complemental strand, 31032578 - 31032521
Alignment:
Q  202 cggttacatttataagcaaaacactactttttaggtttattgaatatctaatgtattt 259  Q
    |||| ||||||||||||||||| | | |||||||||| ||| |||| |||||||||||    
T  31032578 cggtcacatttataagcaaaactcaattttttaggttcattaaataactaatgtattt 31032521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 259
Target Start/End: Complemental strand, 42074269 - 42074212
Alignment:
Q  202 cggttacatttataagcaaaacactactttttaggtttattgaatatctaatgtattt 259  Q
    |||| |||||||||||||||| |||| |||||||||| |||||||  ||||| |||||    
T  42074269 cggtcacatttataagcaaaaaactattttttaggttcattgaatgcctaatatattt 42074212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 210 - 247
Target Start/End: Complemental strand, 50267128 - 50267091
Alignment:
Q  210 tttataagcaaaacactactttttaggtttattgaata 247  Q
    |||||||||||||||||||||||| |||| ||||||||    
T  50267128 tttataagcaaaacactactttttgggttcattgaata 50267091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 262 - 294
Target Start/End: Complemental strand, 8174121 - 8174089
Alignment:
Q  262 ttttttgcttataaatgtgaccagagggagtat 294  Q
    |||||||||||||||||||| ||||||||||||    
T  8174121 ttttttgcttataaatgtgatcagagggagtat 8174089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 264 - 296
Target Start/End: Original strand, 8174211 - 8174243
Alignment:
Q  264 ttttgcttataaatgtgaccagagggagtatat 296  Q
    |||||||||||||||||||| ||||||||||||    
T  8174211 ttttgcttataaatgtgaccggagggagtatat 8174243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 193 - 237
Target Start/End: Original strand, 41944765 - 41944809
Alignment:
Q  193 tactcccgtcggttacatttataagcaaaacactactttttaggt 237  Q
    ||||||| ||||| |||||||||||||||| || |||||||||||    
T  41944765 tactcccttcggtcacatttataagcaaaaaacaactttttaggt 41944809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 201 - 259
Target Start/End: Complemental strand, 23614512 - 23614454
Alignment:
Q  201 tcggttacatttataagcaaaacactactttttaggtttattgaatatctaatgtattt 259  Q
    |||||||||||||||||||||| || |||||||||||| |||||| | |||||||||||    
T  23614512 tcggttacatttataagcaaaaaaccactttttaggttcattgaacacctaatgtattt 23614454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 207 - 247
Target Start/End: Complemental strand, 27990407 - 27990367
Alignment:
Q  207 acatttataagcaaaacactactttttaggtttattgaata 247  Q
    |||||||||||||||||||||||||||||||| ||||||||    
T  27990407 acatttataagcaaaacactactttttaggttcattgaata 27990367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 209 - 257
Target Start/End: Complemental strand, 32125467 - 32125419
Alignment:
Q  209 atttataagcaaaacactactttttaggtttattgaatatctaatgtat 257  Q
    ||||||||||||||  |||||||||||||| ||||||||||||||||||    
T  32125467 atttataagcaaaaatctactttttaggttcattgaatatctaatgtat 32125419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 209 - 259
Target Start/End: Original strand, 47493212 - 47493262
Alignment:
Q  209 atttataagcaaaacactactttttaggtttattgaatatctaatgtattt 259  Q
    ||||||||| |||| |||||||||||| ||||||||||| |||||||||||    
T  47493212 atttataagtaaaaaactactttttagatttattgaatacctaatgtattt 47493262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 265 - 296
Target Start/End: Complemental strand, 23292388 - 23292357
Alignment:
Q  265 tttgcttataaatgtgaccagagggagtatat 296  Q
    ||||||||||||||||||||||||||||||||    
T  23292388 tttgcttataaatgtgaccagagggagtatat 23292357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 207 - 257
Target Start/End: Complemental strand, 33508663 - 33508613
Alignment:
Q  207 acatttataagcaaaacactactttttaggtttattgaatatctaatgtat 257  Q
    ||||||||||||||||||| |||| |||| || |||||||| |||||||||    
T  33508663 acatttataagcaaaacacaacttgttagattcattgaataactaatgtat 33508613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 294
Target Start/End: Complemental strand, 10065093 - 10065060
Alignment:
Q  261 gttttttgcttataaatgtgaccagagggagtat 294  Q
    ||||||||||||||||||||||| ||||||||||    
T  10065093 gttttttgcttataaatgtgaccggagggagtat 10065060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 258
Target Start/End: Complemental strand, 33004299 - 33004250
Alignment:
Q  209 atttataagcaaaacactactttttaggtttattgaatatctaatgtatt 258  Q
    ||||||||| |||| || || ||||| |||||||||||||||||||||||    
T  33004299 atttataagaaaaaaacaacattttaagtttattgaatatctaatgtatt 33004250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 294
Target Start/End: Original strand, 38562239 - 38562272
Alignment:
Q  261 gttttttgcttataaatgtgaccagagggagtat 294  Q
    ||||||||||||||||||||||| ||||||||||    
T  38562239 gttttttgcttataaatgtgaccggagggagtat 38562272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 295
Target Start/End: Original strand, 51267191 - 51267220
Alignment:
Q  266 ttgcttataaatgtgaccagagggagtata 295  Q
    ||||||||||||||||||||||||||||||    
T  51267191 ttgcttataaatgtgaccagagggagtata 51267220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 262 - 295
Target Start/End: Complemental strand, 52840294 - 52840261
Alignment:
Q  262 ttttttgcttataaatgtgaccagagggagtata 295  Q
    |||||||||||||||||||||| |||||||||||    
T  52840294 ttttttgcttataaatgtgaccggagggagtata 52840261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 209 - 257
Target Start/End: Complemental strand, 20291911 - 20291863
Alignment:
Q  209 atttataagcaaaacactactttttaggtttattgaatatctaatgtat 257  Q
    |||||||||||||| |  ||||||||| ||||||||||| |||||||||    
T  20291911 atttataagcaaaaaataactttttagatttattgaataactaatgtat 20291863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 207 - 247
Target Start/End: Original strand, 52280876 - 52280916
Alignment:
Q  207 acatttataagcaaaacactactttttaggtttattgaata 247  Q
    ||||||| |||||||||| ||||||||||||| ||||||||    
T  52280876 acatttacaagcaaaacaatactttttaggttcattgaata 52280916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 207 - 259
Target Start/End: Complemental strand, 53837558 - 53837506
Alignment:
Q  207 acatttataagcaaaacactactttttaggtttattgaatatctaatgtattt 259  Q
    |||||||||||||||||||||  |||||| || ||| |||| |||||||||||    
T  53837558 acatttataagcaaaacactatattttagattcattaaatacctaatgtattt 53837506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000009; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 207 - 259
Target Start/End: Complemental strand, 3485953 - 3485901
Alignment:
Q  207 acatttataagcaaaacactactttttaggtttattgaatatctaatgtattt 259  Q
    ||||||||||||||||||| | ||||||| || ||||||||||||||||||||    
T  3485953 acatttataagcaaaacacaattttttagattcattgaatatctaatgtattt 3485901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 207 - 260
Target Start/End: Original strand, 7307707 - 7307760
Alignment:
Q  207 acatttataagcaaaacactactttttaggtttattgaatatctaatgtattta 260  Q
    ||||||||||||||||||| | |||||||||| |||||||| | ||||||||||    
T  7307707 acatttataagcaaaacacaattttttaggttcattgaataacgaatgtattta 7307760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 207 - 257
Target Start/End: Complemental strand, 12810439 - 12810389
Alignment:
Q  207 acatttataagcaaaacactactttttaggtttattgaatatctaatgtat 257  Q
    |||||| |||||||||||| ||||||||||| |||||||||  ||||||||    
T  12810439 acatttgtaagcaaaacacaactttttaggtatattgaataattaatgtat 12810389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 207 - 257
Target Start/End: Original strand, 35985269 - 35985319
Alignment:
Q  207 acatttataagcaaaacactactttttaggtttattgaatatctaatgtat 257  Q
    |||||||||||||||| || ||||||||| || |||||||| |||||||||    
T  35985269 acatttataagcaaaatacaactttttagattaattgaataactaatgtat 35985319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 207 - 257
Target Start/End: Original strand, 36006677 - 36006727
Alignment:
Q  207 acatttataagcaaaacactactttttaggtttattgaatatctaatgtat 257  Q
    |||||||||||||||| || ||||||||| || |||||||| |||||||||    
T  36006677 acatttataagcaaaatacaactttttagattaattgaataactaatgtat 36006727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 259
Target Start/End: Complemental strand, 12423781 - 12423724
Alignment:
Q  202 cggttacatttataagcaaaacactactttttaggtttattgaatatctaatgtattt 259  Q
    |||| ||||||||||||||||   ||||||||||||| ||||||||  ||||||||||    
T  12423781 cggtcacatttataagcaaaaatgtactttttaggttcattgaatacataatgtattt 12423724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 211 - 247
Target Start/End: Complemental strand, 3967832 - 3967796
Alignment:
Q  211 ttataagcaaaacactactttttaggtttattgaata 247  Q
    |||||||||||| ||||||||||||||| ||||||||    
T  3967832 ttataagcaaaaaactactttttaggttcattgaata 3967796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 209 - 257
Target Start/End: Complemental strand, 29229800 - 29229753
Alignment:
Q  209 atttataagcaaaacactactttttaggtttattgaatatctaatgtat 257  Q
    |||||||||||||| || |||||||||||| |||||||| |||||||||    
T  29229800 atttataagcaaaa-acaactttttaggttcattgaataactaatgtat 29229753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 261 - 293
Target Start/End: Complemental strand, 34670380 - 34670348
Alignment:
Q  261 gttttttgcttataaatgtgaccagagggagta 293  Q
    ||||||||||||||||||||||| |||||||||    
T  34670380 gttttttgcttataaatgtgaccggagggagta 34670348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000009; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 207 - 259
Target Start/End: Complemental strand, 34445392 - 34445340
Alignment:
Q  207 acatttataagcaaaacactactttttaggtttattgaatatctaatgtattt 259  Q
    ||||||||||||||| ||| ||||||||| ||||||||||| |||||||||||    
T  34445392 acatttataagcaaatcacaactttttagatttattgaataactaatgtattt 34445340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 207 - 259
Target Start/End: Original strand, 18550986 - 18551038
Alignment:
Q  207 acatttataagcaaaacactactttttaggtttattgaatatctaatgtattt 259  Q
    ||||||||||||||||||| ||| ||||| || |||||||| |||||||||||    
T  18550986 acatttataagcaaaacacaactgtttagattcattgaataactaatgtattt 18551038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 97 - 163
Target Start/End: Complemental strand, 985660 - 985593
Alignment:
Q  97 agcttatttccataa-ctcttcatgaaagcttatatcaaaaccgtttgaccttagtttatcttttgtt 163  Q
    ||||||||||||||  |||||||||| ||||||| | ||||| ||||||| ||| |||||||||||||    
T  985660 agcttatttccatagtctcttcatgatagcttatgtgaaaacagtttgactttattttatcttttgtt 985593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 207 - 262
Target Start/End: Complemental strand, 5354880 - 5354825
Alignment:
Q  207 acatttataagcaaaacactactttttaggtttattgaatatctaatgtatttagt 262  Q
    ||||||| |||||||||||||||||||||||  ||||||||  | |||||||||||    
T  5354880 acatttaaaagcaaaacactactttttaggtccattgaatactttatgtatttagt 5354825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 204 - 259
Target Start/End: Original strand, 7882811 - 7882866
Alignment:
Q  204 gttacatttataagcaaaacactactttttaggtttattgaatatctaatgtattt 259  Q
    ||||||||||||||||||| | || ||||||| ||||||||| |||| ||||||||    
T  7882811 gttacatttataagcaaaaaattattttttagatttattgaacatctgatgtattt 7882866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 264
Target Start/End: Original strand, 16829212 - 16829268
Alignment:
Q  207 acatttataagcaaaacactactttttaggtttattgaatatctaatgtatttagttt 264  Q
    |||||||||||||||| |  |||||||| ||| |||||||||||||||||| ||||||    
T  16829212 acatttataagcaaaa-ataactttttaagttcattgaatatctaatgtatctagttt 16829268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 262 - 295
Target Start/End: Complemental strand, 28499808 - 28499775
Alignment:
Q  262 ttttttgcttataaatgtgaccagagggagtata 295  Q
    |||||||||||||||||||||| |||||||||||    
T  28499808 ttttttgcttataaatgtgaccggagggagtata 28499775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 247
Target Start/End: Complemental strand, 33366349 - 33366304
Alignment:
Q  202 cggttacatttataagcaaaacactactttttaggtttattgaata 247  Q
    |||||| |||||||||||||| ||||||||||||||| | ||||||    
T  33366349 cggttatatttataagcaaaatactactttttaggttgactgaata 33366304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 292 - 329
Target Start/End: Original strand, 35037051 - 35037088
Alignment:
Q  292 tatatgataagcgcttcattaaattgtttatccaaaca 329  Q
    ||||||||||| | ||||||||||||||||||||||||    
T  35037051 tatatgataagtgtttcattaaattgtttatccaaaca 35037088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 259
Target Start/End: Complemental strand, 40773108 - 40773051
Alignment:
Q  202 cggttacatttataagcaaaacactactttttaggtttattgaatatctaatgtattt 259  Q
    |||| |||||||||||||||| || |||||||||||| ||| || | |||||||||||    
T  40773108 cggtcacatttataagcaaaaaaccactttttaggttcattcaacacctaatgtattt 40773051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 261 - 293
Target Start/End: Original strand, 5865954 - 5865986
Alignment:
Q  261 gttttttgcttataaatgtgaccagagggagta 293  Q
    ||||||||||||||||||||||| |||||||||    
T  5865954 gttttttgcttataaatgtgaccggagggagta 5865986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 262 - 294
Target Start/End: Original strand, 6266253 - 6266285
Alignment:
Q  262 ttttttgcttataaatgtgaccagagggagtat 294  Q
    |||||||||||||||||||||| ||||||||||    
T  6266253 ttttttgcttataaatgtgaccggagggagtat 6266285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 262 - 294
Target Start/End: Complemental strand, 8850290 - 8850258
Alignment:
Q  262 ttttttgcttataaatgtgaccagagggagtat 294  Q
    |||||||||||||||||||||| ||||||||||    
T  8850290 ttttttgcttataaatgtgaccggagggagtat 8850258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 261 - 293
Target Start/End: Original strand, 14751238 - 14751270
Alignment:
Q  261 gttttttgcttataaatgtgaccagagggagta 293  Q
    ||||||||||||||||||||||| |||||||||    
T  14751238 gttttttgcttataaatgtgaccggagggagta 14751270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 207 - 259
Target Start/End: Complemental strand, 19087908 - 19087856
Alignment:
Q  207 acatttataagcaaaacactactttttaggtttattgaatatctaatgtattt 259  Q
    ||||||||||||||||   ||||||||||||| ||||||||  ||||||||||    
T  19087908 acatttataagcaaaaatgtactttttaggttcattgaatacataatgtattt 19087856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 209 - 257
Target Start/End: Complemental strand, 28351073 - 28351025
Alignment:
Q  209 atttataagcaaaacactactttttaggtttattgaatatctaatgtat 257  Q
    |||||||||||||| || ||||||||| || |||||||| |||||||||    
T  28351073 atttataagcaaaaaacaactttttagattcattgaataactaatgtat 28351025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 261 - 293
Target Start/End: Complemental strand, 34445288 - 34445256
Alignment:
Q  261 gttttttgcttataaatgtgaccagagggagta 293  Q
    |||||||||||||||| ||||||||||||||||    
T  34445288 gttttttgcttataaaagtgaccagagggagta 34445256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000009; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 207 - 259
Target Start/End: Complemental strand, 27786587 - 27786535
Alignment:
Q  207 acatttataagcaaaacactactttttaggtttattgaatatctaatgtattt 259  Q
    ||||||||||||||||||| |||||||||||| |||||||| ||||| |||||    
T  27786587 acatttataagcaaaacacaactttttaggttcattgaatacctaatatattt 27786535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 184 - 238
Target Start/End: Original strand, 27786442 - 27786496
Alignment:
Q  184 ataagcacttactcccgtcggttacatttataagcaaaacactactttttaggtt 238  Q
    ||||| || ||||||| ||||| |||||||||||||||| |||||||||||||||    
T  27786442 ataagaacatactcccttcggtcacatttataagcaaaaaactactttttaggtt 27786496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 123 - 194
Target Start/End: Complemental strand, 27792872 - 27792804
Alignment:
Q  123 agcttatatcaaaaccgtttgaccttagtttatcttttgtttgttaagaaatagtttatacataagcactta 194  Q
    ||||||||| ||||  ||||||||||| |||||||||||||| |   ||||||| |||||||||||||||||    
T  27792872 agcttatatgaaaatagtttgaccttattttatcttttgttttt---gaaatagcttatacataagcactta 27792804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 261 - 293
Target Start/End: Complemental strand, 16867645 - 16867613
Alignment:
Q  261 gttttttgcttataaatgtgaccagagggagta 293  Q
    |||||||||||||||||||||||||||||||||    
T  16867645 gttttttgcttataaatgtgaccagagggagta 16867613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 202 - 258
Target Start/End: Original strand, 49733626 - 49733682
Alignment:
Q  202 cggttacatttataagcaaaacactactttttaggtttattgaatatctaatgtatt 258  Q
    |||| ||||||||||||||||||  ||||||||| |||||||||||  |||||||||    
T  49733626 cggtcacatttataagcaaaacataactttttagatttattgaatacttaatgtatt 49733682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 204 - 247
Target Start/End: Original strand, 26601969 - 26602012
Alignment:
Q  204 gttacatttataagcaaaacactactttttaggtttattgaata 247  Q
    ||||||||||||||||||| || |||||||||||| ||||||||    
T  26601969 gttacatttataagcaaaaaacaactttttaggttcattgaata 26602012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 209 - 259
Target Start/End: Complemental strand, 43598023 - 43597973
Alignment:
Q  209 atttataagcaaaacactactttttaggtttattgaatatctaatgtattt 259  Q
    |||||||| ||||| ||||||||||| |||||||||||| ||||| |||||    
T  43598023 atttataaacaaaaaactactttttaagtttattgaatacctaatatattt 43597973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 202 - 264
Target Start/End: Original strand, 55121178 - 55121240
Alignment:
Q  202 cggttacatttataagcaaaacactactttttaggtttattgaatatctaatgtatttagttt 264  Q
    |||| |||||||||| ||||| || | |||||||||| |||||||| ||||||||||| ||||    
T  55121178 cggtcacatttataaacaaaaaacaattttttaggttcattgaataactaatgtatttggttt 55121240  T

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Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 245
Target Start/End: Complemental strand, 26331362 - 26331309
Alignment:
Q  192 ttactcccgtcggttacatttataagcaaaacactactttttaggtttattgaa 245  Q
    ||||||||  |||| |||||||||||||||| || |||||||||||| ||||||    
T  26331362 ttactccctccggtcacatttataagcaaaaaacaactttttaggttcattgaa 26331309  T

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Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 201 - 257
Target Start/End: Complemental strand, 18093915 - 18093859
Alignment:
Q  201 tcggttacatttataagcaaaacactactttttaggtttattgaatatctaatgtat 257  Q
    ||||| |||||||||||||| | || | |||||||||||||||||||  ||||||||    
T  18093915 tcggtcacatttataagcaataaacaagtttttaggtttattgaataattaatgtat 18093859  T

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Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 261 - 293
Target Start/End: Original strand, 26331329 - 26331361
Alignment:
Q  261 gttttttgcttataaatgtgaccagagggagta 293  Q
    ||||||||||||||||||||||| |||||||||    
T  26331329 gttttttgcttataaatgtgaccggagggagta 26331361  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 192 - 259
Target Start/End: Original strand, 472406 - 472473
Alignment:
Q  192 ttactcccgtcggttacatttataagcaaaacactactttttaggtttattgaatatctaatgtattt 259  Q
    ||||||||  |||| |||||||||| ||||| |  ||||||||||||||||||||| |||||||||||    
T  472406 ttactccctccggtcacatttataaacaaaatataactttttaggtttattgaataactaatgtattt 472473  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 262 - 296
Target Start/End: Original strand, 41517478 - 41517512
Alignment:
Q  262 ttttttgcttataaatgtgaccagagggagtatat 296  Q
    |||||||||||||||||||||| ||||||||||||    
T  41517478 ttttttgcttataaatgtgaccggagggagtatat 41517512  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 259
Target Start/End: Complemental strand, 472548 - 472491
Alignment:
Q  202 cggttacatttataagcaaaacactactttttaggtttattgaatatctaatgtattt 259  Q
    |||| ||| ||||||||||||||| | |||||||||| |||||||| ||||| |||||    
T  472548 cggtcacaattataagcaaaacacaattttttaggttaattgaataactaatatattt 472491  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 257
Target Start/End: Original strand, 30429063 - 30429128
Alignment:
Q  192 ttactcccgtcggttacatttataagcaaaacactactttttaggtttattgaatatctaatgtat 257  Q
    ||||||||  |||| |||||||||||||||| || |||||||||||| ||| ||||  ||||||||    
T  30429063 ttactccctccggtcacatttataagcaaaaaacaactttttaggttcattcaataattaatgtat 30429128  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 288
Target Start/End: Complemental strand, 32516163 - 32516134
Alignment:
Q  259 tagttttttgcttataaatgtgaccagagg 288  Q
    ||||||||||||||||||||||||||||||    
T  32516163 tagttttttgcttataaatgtgaccagagg 32516134  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 263 - 296
Target Start/End: Complemental strand, 41517389 - 41517356
Alignment:
Q  263 tttttgcttataaatgtgaccagagggagtatat 296  Q
    ||||||||||||||||||||| ||||||||||||    
T  41517389 tttttgcttataaatgtgaccggagggagtatat 41517356  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 261 - 293
Target Start/End: Complemental strand, 9733506 - 9733474
Alignment:
Q  261 gttttttgcttataaatgtgaccagagggagta 293  Q
    ||||||||||||||||||||||| |||||||||    
T  9733506 gttttttgcttataaatgtgaccggagggagta 9733474  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 207 - 259
Target Start/End: Complemental strand, 10172879 - 10172827
Alignment:
Q  207 acatttataagcaaaacactactttttaggtttattgaatatctaatgtattt 259  Q
    |||||||||| ||||  || | ||||||| |||||||||||||||||||||||    
T  10172879 acatttataaacaaataacaattttttagatttattgaatatctaatgtattt 10172827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 261 - 293
Target Start/End: Complemental strand, 11565028 - 11564996
Alignment:
Q  261 gttttttgcttataaatgtgaccagagggagta 293  Q
    ||||||||||||||||||||||| |||||||||    
T  11565028 gttttttgcttataaatgtgaccggagggagta 11564996  T

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Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 261 - 293
Target Start/End: Original strand, 12488104 - 12488136
Alignment:
Q  261 gttttttgcttataaatgtgaccagagggagta 293  Q
    ||||||||||| |||||||||||||||||||||    
T  12488104 gttttttgcttgtaaatgtgaccagagggagta 12488136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 261 - 293
Target Start/End: Complemental strand, 30429096 - 30429064
Alignment:
Q  261 gttttttgcttataaatgtgaccagagggagta 293  Q
    ||||||||||||||||||||||| |||||||||    
T  30429096 gttttttgcttataaatgtgaccggagggagta 30429064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 211 - 247
Target Start/End: Original strand, 40363232 - 40363268
Alignment:
Q  211 ttataagcaaaacactactttttaggtttattgaata 247  Q
    |||||||||||| ||||||||||||||| ||||||||    
T  40363232 ttataagcaaaaaactactttttaggttcattgaata 40363268  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 193 - 259
Target Start/End: Original strand, 12354446 - 12354512
Alignment:
Q  193 tactcccgtcggttacatttataagcaaaacactactttttaggtttattgaatatctaatgtattt 259  Q
    ||||||| ||||| ||||||||||||||||  | |||||||||  | ||||||| ||||||||||||    
T  12354446 tactcccttcggtcacatttataagcaaaaatcaactttttagactcattgaatgtctaatgtattt 12354512  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 209 - 259
Target Start/End: Original strand, 30857240 - 30857290
Alignment:
Q  209 atttataagcaaaacactactttttaggtttattgaatatctaatgtattt 259  Q
    ||||||| |||||| |||||||||||| || ||||||||| ||||||||||    
T  30857240 atttatatgcaaaatactactttttagattcattgaatatttaatgtattt 30857290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 294
Target Start/End: Original strand, 1784202 - 1784235
Alignment:
Q  261 gttttttgcttataaatgtgaccagagggagtat 294  Q
    |||||||||||||||||||||||||||| |||||    
T  1784202 gttttttgcttataaatgtgaccagaggaagtat 1784235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 259
Target Start/End: Complemental strand, 4578320 - 4578267
Alignment:
Q  207 acatttataagcaaaacact-actttttaggtttattgaatatctaatgtattt 259  Q
    |||||||||||||||| | | |||||||||||| |||||||| |||||||||||    
T  4578320 acatttataagcaaaaaaatcactttttaggttcattgaatacctaatgtattt 4578267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 260
Target Start/End: Complemental strand, 9503582 - 9503529
Alignment:
Q  207 acatttataagcaaaacactactttttaggtttattgaatatctaatgtattta 260  Q
    |||||||||||||||| || ||||||| | || ||||||||| |||||||||||    
T  9503582 acatttataagcaaaaaacaactttttcgattcattgaatatttaatgtattta 9503529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 261 - 297
Target Start/End: Complemental strand, 6590810 - 6590774
Alignment:
Q  261 gttttttgcttataaatgtgaccagagggagtatatg 297  Q
    ||||||||||||||||||||| | |||||||||||||    
T  6590810 gttttttgcttataaatgtgaacggagggagtatatg 6590774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 262 - 290
Target Start/End: Original strand, 6590897 - 6590925
Alignment:
Q  262 ttttttgcttataaatgtgaccagaggga 290  Q
    |||||||||||||||||||||||||||||    
T  6590897 ttttttgcttataaatgtgaccagaggga 6590925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 202 - 246
Target Start/End: Original strand, 12736359 - 12736403
Alignment:
Q  202 cggttacatttataagcaaaacactactttttaggtttattgaat 246  Q
    |||||||  |||||||||||| ||||||||||||||| |||||||    
T  12736359 cggttactattataagcaaaaaactactttttaggttcattgaat 12736403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 208 - 263
Target Start/End: Complemental strand, 27988210 - 27988154
Alignment:
Q  208 catttataagcaaaaca-ctactttttaggtttattgaatatctaatgtatttagtt 263  Q
    ||||||||||||||||| | ||||||||| || ||||||||  ||||||||||||||    
T  27988210 catttataagcaaaacaacaactttttagattcattgaataattaatgtatttagtt 27988154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 208 - 263
Target Start/End: Complemental strand, 28045512 - 28045456
Alignment:
Q  208 catttataagcaaaaca-ctactttttaggtttattgaatatctaatgtatttagtt 263  Q
    ||||||||||||||||| | ||||||||| || ||||||||  ||||||||||||||    
T  28045512 catttataagcaaaacaacaactttttagattcattgaataattaatgtatttagtt 28045456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 207 - 259
Target Start/End: Complemental strand, 30857360 - 30857308
Alignment:
Q  207 acatttataagcaaaacactactttttaggtttattgaatatctaatgtattt 259  Q
    |||||||||||||||| | |||||||||| ||||||||||  ||||| |||||    
T  30857360 acatttataagcaaaaaattactttttagatttattgaatgcctaatatattt 30857308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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