View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12238_low_9 (Length: 311)
Name: NF12238_low_9
Description: NF12238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12238_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 92 - 296
Target Start/End: Complemental strand, 42080783 - 42080579
Alignment:
| Q |
92 |
gcttgaaatccgtaaataatagtatattgagaaaattgaaaaattgaatgtaaccatatgtgccatttaaatatcaaacatgccttcgatatgaagtgtc |
191 |
Q |
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| T |
42080783 |
gcttgaaatccgtaaataatagtatattgagaaaattgaaaaattgaatgtaaccatatgtgccatttaaatataaaacatgccttcgatatgaagtgtc |
42080684 |
T |
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| Q |
192 |
tattgttagatgaattcagatacctaaacctatatgcaaagaccaatcatacgagatactaacatctattcgagggctataacattttttaattgatatg |
291 |
Q |
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| T |
42080683 |
tattgttagatgaattcagatacctaaaccgatatgcaaagaccaatcatacgagatactaacatctattcgagggctataacattttttaactgatatg |
42080584 |
T |
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| Q |
292 |
ttctt |
296 |
Q |
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||||| |
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| T |
42080583 |
ttctt |
42080579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 107 - 159
Target Start/End: Complemental strand, 42071868 - 42071816
Alignment:
| Q |
107 |
ataatagtatattgagaaaattgaaaaattgaatgtaaccatatgtgccattt |
159 |
Q |
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|||||| || |||||||||||||| |||||||||||||||||||| |||||| |
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| T |
42071868 |
ataataataaattgagaaaattgattaattgaatgtaaccatatgttccattt |
42071816 |
T |
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