View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12239_high_12 (Length: 319)
Name: NF12239_high_12
Description: NF12239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12239_high_12 |
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Alignment Details
Target: chr7 (Bit Score: 277; Significance: 1e-155; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 11 - 302
Target Start/End: Original strand, 44404901 - 44405195
Alignment:
| Q |
11 |
cagagagtgcaacaagggtag---gaggagtggtgtctgttggcaacaagatgggacccacaaagtctggggaagatggttcttcgacttataaggtttc |
107 |
Q |
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| T |
44404901 |
cagaaagtgcaacaagggtagtaggaggagtggtgtctgttggcaacaagatgggacccacaaagtctggggaagatggttcttcgacttataaggtttc |
44405000 |
T |
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| Q |
108 |
atgggttccagatcctgtcactggttactacaagcctgagaatattaaggatactgatgccgctgatttacgtgctaagcttctccgcaaaaaatttaac |
207 |
Q |
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| T |
44405001 |
atgggttccagatcctgtcactggttactacaagcctgagaatattaaggatactgatgccgctgatttacgtgctaagcttctccgcaaaaaatttaac |
44405100 |
T |
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| Q |
208 |
aactaatttcaatccattcaagaaatagatttatattatgtattttgggtttgttatttcaaccgcggatctcatgagcttttggggtcgattgt |
302 |
Q |
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| T |
44405101 |
aactaatttcaatccattcaagaaatagatttatattatgtattttgggtttgttatttcaaccgcggatctcatgagcttttggggtcgattgt |
44405195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 31 - 219
Target Start/End: Original strand, 44414601 - 44414789
Alignment:
| Q |
31 |
ggaggagtggtgtctgttggcaacaagatgggacccacaaagtctggggaagatggttcttcgacttataaggtttcatgggttccagatcctgtcactg |
130 |
Q |
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|||||||||||||||| || ||||||| |||| |||| ||||| ||||||| ||| ||| |||||||||||||||||||||||||||| ||||||| |
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| T |
44414601 |
ggaggagtggtgtctgccggaaacaagacgggagccacgaagtcaagggaagaaggtgtttctgcttataaggtttcatgggttccagatccagtcactg |
44414700 |
T |
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| Q |
131 |
gttactacaagcctgagaatattaaggatactgatgccgctgatttacgtgctaagcttctccgcaaaaaatttaacaactaatttcaa |
219 |
Q |
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| T |
44414701 |
gttactataggcctgagaacattaaggatattgatgctgctgaattacgtgctaagcttccccccaaaaaattcaacaactaatctcaa |
44414789 |
T |
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