View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12239_high_13 (Length: 303)
Name: NF12239_high_13
Description: NF12239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12239_high_13 |
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Alignment Details
Target: chr4 (Bit Score: 245; Significance: 1e-136; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 10 - 287
Target Start/End: Complemental strand, 53866956 - 53866679
Alignment:
| Q |
10 |
agaacctgtgagcggctgacatacagaattaatatcaaacgcaacaaatattttcttcaagaaatcaagagcttcatttgtcaactcgacgctctgtaga |
109 |
Q |
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| T |
53866956 |
agaacgtgtgagcggctgacatacagaattaatatcaaacgcaacaaatattttcttcaagaaatcaagagattcatttgtcaactcgatgctctgtaga |
53866857 |
T |
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| Q |
110 |
cgttaaatcaaatcttgattagaatacattgaaagtttcatgttgtnnnnnnnttgatctcaaactggtctaataaagaaataaagaacaaaatatacac |
209 |
Q |
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| T |
53866856 |
cgttaaatcaaatcttgattagaatacattgaaagtttcatgttgtaaaaaaattgatctcaaactggtctaataaagaaataaagaacaaaatatacac |
53866757 |
T |
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| Q |
210 |
aaggccacatttcatatcaaaagaaacacctgatcaggagcacgtttcaaatccggaattagatgatcagcaagtttg |
287 |
Q |
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| T |
53866756 |
aaggccacatttcatatcaaaagaaacacctgatcaggagcacgtttcaaatccggaattagatgatcagcaagtttg |
53866679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 51 - 135
Target Start/End: Original strand, 54160410 - 54160495
Alignment:
| Q |
51 |
caacaaatattttcttcaagaaatcaagagcttcatttgtcaactcgacgctctgtagacgttaaatcaaatc-ttgattagaata |
135 |
Q |
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| T |
54160410 |
caacaaatactttcttcaagaaggctaaagcttcatttgtcaactcgacactctgtacaaattaaatccaatctttgattagaata |
54160495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 284
Target Start/End: Original strand, 54160519 - 54160613
Alignment:
| Q |
188 |
aaataaagaacaaaatatacacaaggccacatttcatatcaaaagaaacacctgatcaggagcacgtttcaaatccggaattagatgatcagcaagt |
284 |
Q |
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| T |
54160519 |
aaatacagaacacaatacaaacaaggccacaatttgtataaaaaaaaac--ctgatcgggagcacgtgtcagaggcggaattagatgatcagcaagt |
54160613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 215 - 283
Target Start/End: Original strand, 17882600 - 17882668
Alignment:
| Q |
215 |
cacatttcatatcaaaagaaacacctgatcaggagcacgtttcaaatccggaattagatgatcagcaag |
283 |
Q |
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| T |
17882600 |
cacaattcatctcaaaagaaacacctgatcaggtgcacgtttcaaaggtggaattaaatcatcagcaag |
17882668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 210 - 260
Target Start/End: Original strand, 14775222 - 14775272
Alignment:
| Q |
210 |
aaggccacatttcatatcaaaagaaacacctgatcaggagcacgtttcaaa |
260 |
Q |
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| T |
14775222 |
aaggtcacaattcatctgaaaagaaacacctgatcaggtgcacgtttcaaa |
14775272 |
T |
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